#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 20, 2025; 2:07 GMT TreeBASE (cc) 1994-2008 Study reference: Johnson L., & Johnson R. 2006. Morphological delimitation and molecular evidence for allopolyploidy in Collomia wilkenii (Polemoniaceae), a new species from northern Nevada. Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1445] [ The following blocks are input data for analysis step 2789 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2789; DIMENSIONS NTAX=24; TAXLABELS Collomia_cavanillesii Collomia_grandiflora_NV Collomia_grandiflora_OR Collomia_heterophylla Collomia_linearis_CA Collomia_linearis_ID Collomia_linearis_NV Collomia_linearis_UT Collomia_macrocalyx Collomia_renecta Collomia_tenella_ID Collomia_tenella_NV1 Collomia_tenella_UT1 Collomia_tenella_UT2 Collomia_tinctoria_CA Collomia_tinctoria_ID Collomia_tinctoria_NV Collomia_tracyi Collomia_wilkenii_NV1clone1 Collomia_wilkenii_NV1clone2 Collomia_wilkenii_NV2clone2 Collomia_wilkenii_NV2clone8 Collomia_wilkenii_NV3clone2 Collomia_wilkenii_NV3clone4 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M965] TITLE Matrix_2_ITS_cloned; LINK TAXA = TaxaForAnalysisStep2789; DIMENSIONS NCHAR=630; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Collomia_cavanillesii TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCTTTGCTTGGATGCCCTGTTCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCTTATGGGAATCTTGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATTGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGTAAGTAATGCCTCGACC Collomia_grandiflora_NV TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTCGGGTGGTGCGGGTGTA-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TTGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCAGTACGCGCCAAGGAAATGTAACAAAGAGAGCCTTGCTTGGATGCCCCGTT{CT}GCGGGTGCTGAAGAGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAAGCATGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTGTTGTTCTCTCCGTCAACTCCATTGACCCTGTTGCATTGCGAAAGTAATGCCTCGACC Collomia_grandiflora_OR TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTCGGGTGGTGCGGGTGTA-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TTGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCAGTACGCGCCAAGGAAATGTAACAAAGAGAGCCTTGCTTGGATGCCCCGTT{CT}GCGGGTGCTGAAGAGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAAGCATGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTGTTGTTCTCTCCGTCAACTCCATTGACCCTGTTGCATTGCGAAAGTAATGCCTCGACC Collomia_heterophylla TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTCGGGTGGTGCGGGCGTT-GTATCTCGGTACTCGCTCGTTACCCCCATGCTAGGAGTGTAATCAATGCC-TCGGCAATGCTTGCACTTCCCGGCAC---AACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCCTTGCTTGGATGCCCCGTTCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCTTCCCTTATGGGAATCATGGTTTGGGGGCGGAAATTGGTCTCCCGTGCACATCGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGTGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGTTGCATTGCGAAAGTAATGCCTCGACC Collomia_linearis_CA TCGAAACCTGCCTAGCAGAATGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCTTTGCTTGGATGCCCCGTTCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCTTGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATTGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGTAAGTAATGCCTCGACC Collomia_linearis_ID TCGAAACCTGCCTAGCAGAA{CT}GACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCTTTGCTTGGATGCCCCGTTCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCTTGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATTGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGTAAGTAATGCCTCGACC Collomia_linearis_NV TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCT{CT}GGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCTTTGCTTGGATGCC{CT}CGTTCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCTTGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATTGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGTAAGTAATGCCTCGACC Collomia_linearis_UT TCGAAACCTGCCTAGCAGAATGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCTTTGCTTGGATGCCCCGTTCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCTTGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATTGTTGCGTGGTTGGCCTAAAT{AT}AGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGTAAGTAATGCCTCGACC Collomia_macrocalyx TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TTGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCAGTATGCGCCAAGGAAATGTAACAAAGAGAGCCTTGCTTGGATGCCCCGTTCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCTTGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACCTCGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCGACTCCATTGACCCTGATGCATTGCGCAAGTAATGCCTCGACC Collomia_renecta TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCCATTGACCATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCTTTGCTTGGATGCCCCGTTTGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCTT-ATGGGAATCTTGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGTAAGTAATGCCTCGACC Collomia_tenella_ID TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TTGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCGTTGCTTGGATGCCCCGTTTGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCATGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGTGTGGTTGGCCTAAATAAGAGTGGACGTGAACGTGCGTCACAACAAGTGGTGGTTGTTAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGAAAGTAATGCCTCGACC Collomia_tenella_NV1 TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TTGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCGTTGCTTGGATGCCCCGTTTGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCATGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGTGTGGTTGGCCTAAATAAGAGTGGACGTGAACGTGCGTCACAACAAGTGGTGGTTGTTAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGAAAGTAATGCCTCGACC Collomia_tenella_UT1 TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TTGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCGTTGCTTGGATGCCCCGTTTGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCATGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGTGTGGTTGGCCTAAATAAGAGTGGACGTGAACGTGCGTCACAACAAGTGGTGGTTGTTAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGAAAGTAATGCCTCGACC Collomia_tenella_UT2 TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TTGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCGTTGCTTGGATGCCCCGTTTGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCATGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGTGTGGTTGGCCTAAATAAGAGTGGACGTGAACGTGCGTCACAACAAGTGGTGGTTGTTAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGAAAGTAATGCCTCGACC Collomia_tinctoria_CA TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTCGGGTGGTGCGAGCGTTCGTATCTTGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCCATGCTTGCACTTCT-GGCACATCAACGAACCCCGGCGCGGAATGCGCCAAGGAAATGTAACAAAGAGAGCCTTGCATGGATGCCCCGTCCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ACGGGAATCATGGGTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTTCCTTCGTCAACTCCATTGACCCTGTTGCATTACGAAAGTAATGCCTCGACC Collomia_tinctoria_ID TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTCGGGTGGTGCGAGTGTTCGTATCTTGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCCATGCTTGCACTTCT-GGCACATCAACGAACCCCGGCGCGGAATGCGCCAAGGAAATGTAACAAAGAGAGCCTTGCATGGATGCCCCGTCCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ACGGGAATCATGGGTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTTCCTTCGTCAACTCCATTGACCCTGTTGCATTACGAAAGTAATGCCTCGACC Collomia_tinctoria_NV TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTCGGGTGGTGCGAGCGTT{CT}GTATCTTGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCAATGCTTGCACTTCC-GGCACATCAACGAACCCCGGCGCGGAATGCGCCAAGGAAATGTAACAAAGAGAGCCTTGCATGGATGCCCCGTCCGCGGGTGCCGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ACGGGAATCATGGGTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTTCCTTCGTCAACTCCATTGACCCTGTTGCATTACGAAAGTAATGCCTCGACC Collomia_tracyi TCGAAACCTGCATAGCAGAACGACCCGCGAACTTGTATTCAAAACTCGGGTGGTGCGAGCGT{AT}TGTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCA{AG}TGGTTGCACTTCC-GGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGA{AT}ATGTAACAAAGAGAGCCTTGCATGGATGCCCCGTTTGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCATGGTTTG{AG}GAGCGGAAATTGGTCTCCCGTGCACATTGTTGCGTGGTTGGCCTAAATAAGAGTCGACGTGAACGTGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCCCTTCGTTGACTCCATTGACCCTGTTGCATTGCGAAAGTAATGCCTCGACC Collomia_wilkenii_NV1clone1 TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TTGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCGTTGCTTGGATGCCCCGTTTGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCGTTAGGCCGAGGGCACGTTTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCATGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGTGTGGTTGGCCTAAATAAGAGTGGACGTGAACGTGCGTCACAACAAGTGGTGGTTGTTAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGAAAGTAATGCCTCGACC Collomia_wilkenii_NV1clone2 TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCTTTGCTTGGATGCCCCGTTCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCTTGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATTGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGTAAGTAATGCCTCGACC Collomia_wilkenii_NV2clone2 TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCTTTGCTTGGATGCCCCGTTCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCTTGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATTGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGTAAGTAATGCCTCGACC Collomia_wilkenii_NV2clone8 TCGAAACCTGCCTAGCAGAACGACCCGCGAACCTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TTGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCGTTGCTTGGATGCCCCGTTTGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCC-AACCTCATCCCT-ATGGGAATCATGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGTGTGGTTGGCCTAAATAAGAGTGGACGTGAACGTGCGTCACAACAAGTGGTGGTTGTTAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGAAAGTAATGCCTCGACC Collomia_wilkenii_NV3clone2 TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TTGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCGTTGCTTGGATGCCCCGTTTGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCTTATGGGAATCATGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATCGTTGTGTGGTTGGCCTAAATAAGAGTGGACGTGAACGTGCGTCACAACAAGTGGTGGTTGTTAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGAAAGTAATGCCTCGACC Collomia_wilkenii_NV3clone4 TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTGGTGCGGGTGTT-GTATCTCGGTACTCGCTCGTTACCCCCACGCTAGGAGTGTAATCAAGGCC-TCGGCAATGCTTGCACTTCCCGGCACATCAACGAACCCCGGCGCGGTATGCGCCAAGGAAATGTAACAAAGAGAGCTTTGCTTGGATGCCCCGTTCGCGGGTGCTGAAGTGCAATGCCATCTTACAAAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCACATCGCGTCGCCCCCAACCTCATCCCT-ATGGGAATCTTGGTTTGGGAGCGGAAATTGGTCTCCCGTGCACATTGTTGCGTGGTTGGCCTAAATAAGAGTGGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTCAAACCGTTGCGTTGTTGTTGTGCGTTATTGTTCTCTCCGTCAACTCCATTGACCCTGATGCATTGCGTAAGTAATGCCTCGACC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Matrix_2_ITS_cloned) = N: 1-630; CODONPOSSET CodonPositions (CHARACTERS = Matrix_2_ITS_cloned) = N: 1-630; END; [ The following blocks are output data for analysis step 2789 ] BEGIN TREES; TITLE Tb7563; LINK TAXA = TaxaForAnalysisStep2789; TREE Fig._1b = [&R] (Collomia_heterophylla,((((Collomia_tinctoria_CA,Collomia_tinctoria_ID),Collomia_tinctoria_NV),Collomia_tracyi),((((((Collomia_linearis_CA,Collomia_linearis_UT,Collomia_linearis_ID),Collomia_linearis_NV,Collomia_cavanillesii,Collomia_wilkenii_NV1clone2,Collomia_wilkenii_NV2clone2,Collomia_wilkenii_NV3clone4),Collomia_renecta),Collomia_macrocalyx),(Collomia_wilkenii_NV1clone1,Collomia_wilkenii_NV2clone8,Collomia_wilkenii_NV3clone2,Collomia_tenella_UT1,Collomia_tenella_NV1,Collomia_tenella_UT2,Collomia_tenella_ID)),(Collomia_grandiflora_OR,Collomia_grandiflora_NV)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr496] END;