#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 12, 2025; 11:05 GMT

TreeBASE (cc) 1994-2008

Study reference:
Choudhury A., & León-règagnon V. 2005. Molecular phylogenetics and biogeography of
Bunodera spp. (Trematoda: Allocreadiidae), parasites of percid and gasterosteid
fishes. Canadian Journal of Zoology, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1446]

[ The following blocks are input data for analysis step 2793 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2793;
        DIMENSIONS NTAX=7;
        TAXLABELS
            Allocreadium_lobatum
            Bunodera_eucaliae
            Bunodera_inconstans
            Bunodera_luciopercae
            Bunodera_mediovitellata
            Bunodera_sacculata
            Crepidostomum_cooperi
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M968]

	TITLE Bunodera_Matrix;
	LINK TAXA = TaxaForAnalysisStep2793;
	DIMENSIONS NCHAR=836;
	FORMAT DATATYPE=Standard SYMBOLS= "A C G T 4 5 6 7 8 9 B D E F H J K L M N P Q R 0 1 2" MISSING=? GAP= -;

MATRIX
[                                   10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830      ]
[                                    .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
Allocreadium_lobatum        TTGGCCATTAGGCAATGTGGTGTTTAGGTCGTTCCGCAGAGACACTGCTCCTCTCTAAGTCCATCAATGAGTACGGTTGTACTAACATGGCCCAAGGAGGGTGAAAGGCCCGTAAGAGTGGAGTTCTGGTACGACAGTGTCTCTCTGGATTGACCTTGGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCCAAGGCTAAATACTAGCACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGTAC-TTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTTAGAGGTAAACGGGTGGAGTTGAACTGTAATCTTTGAGAATTCAGCTGGTGAATTT-GCTTGAGCTTGGTCAAAATGAGCAGGGCTCCGAGGTATGCTTACTTGCATGTCCTGGTCTTCGGATTGGGATGCGCGTTGCTCTTATCAAGGGTTGCGCGCCTCGGGTGTCCAGCTGGCTCTGTCGCCAGTGCACTTTCTCAGAGTGATCACCACGACCGGCGCTGCTGCTTTTCTGTTATAGTTAAATCGGTCATTCATCGTCCTTGTGGCGTTGGGTGGTCGACACGGCAGGTAACTGGGGG-CATTCTTCGGTTTGTTG-CCCGGTGTATGCTGGCTTTAACGGTCCTATGCAGTGTGTCGGAGACGGCGGCTTGTGGTGTGTGCGTGCGTGCCTATCTGT-TGGCATATTCTGGTTTGGTGGCTGTGTGCTTGTTCAAGCAGGCCTAGTTATAGCCGGAGTGTGTCAGTGGGTGGTTGCGTGTGTGACACTGTTCAGGGCCAATAGTCTG0000000000000000000
Bunodera_eucaliae           TTGGTTATTAGGCAATGTGGTGTTTAGGTTGTACCGCAGAGACACTGCTCCTCTCTAAGTCCATCAATGAGTACGGTTGTACTGACATGGCCCATGGAGGGTGAAAGGCCCGTAAGAGTGGAGTTGTGGCATGACAGTGTCTCTCTGGAACGACCTTGGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCCAAGGCTAAATACAAGCACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGTAC-TTTGAAGACAGAGTAAACAGTGCGTGAAACCGCTTACAGGTAAACGGGTGGAGTTGAACTGCAATCTCTGA-AATTCATCTGGGGAATTTTGCTTGAGCTTGTTCAA-TTGGGCAGGGCTC???????????????????????????????????????????????????ATTTATCAAGGATTGTGCGCCTTGGCGGTCTAGCTGGCTCATTCGCCAGTGCACTTTCTTGGAGTGATCACCACGACCGGCGCTGCTGCTGGGCTGTTATAGTTAAACCGGGCATTCTTCGTCCTCGTGGCGTTGGGTGTACGACACGGCAGGTAACTGGGATACTTGCTTCGGCTTGTTTTCTTGGTGTATGCTGGCTTTAACGGTTCTATGCGGTGTGTCGGAGACGGCGGCTTGTGGTGTGTGCATGCGTGTCTATCTGT-TGGCGCATTCTGGTTTGGTGGCTGTGTGCTTGTTCAAGCAGGCCCAGTTATGGCCGGAGTGTGTCAGTGGGTGGATGCGTGTGTGACATTTTTCAGGGCCAATAGTCTG1111110000000000115
Bunodera_inconstans         TTGGTTATTAGGCAATGTGGTGTTTAGGTTGTACCGCAGAGACACTGCTCCTCTCTAAGTCCATCAATGAGTACGGTTGTACTGACATGGCCCATGGAGGGTGAAAGGCCCGTAAGGGAGGAGTTGTGGCATGACAGTGTCTCTCTGGAATGACCTTGGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCCAAGGCTAAATACAAGCACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGTAC-TTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTTAGAGGTAAACGGGTGGAGTTGAACTGCAATCTCTGAGAATTCAGCTGGGGAATTTTGCTTGAGCTTGGTCAA-TTGGGCAGGGCCTCGAGGTATGCTTAACTGCATGTTCTGATCTTCGGGTCGGGATGCGCGTTGTTCTTATCAAGGACTGCGCGCCTTGGG-GTCATGCTGGCTCATTCGCCAGTGCACTTTCTTGGAGTGATCACCACGACCGGCGCTGCTGCTGGGCTGTTATAGTTAAACCGGGCATTCTTCGTCCTTGTGGCGTTGGGTGTACGACACGGCAGGTAACTGGGAT-CTTGCTTCGGCTTGTTGTCCTGGTGTATGCTGGCTTTAATGGTTCTATGCGGTGTGTCGGAGACGGCGGCTTGTGGTGTGTGCATGCGTGTCTATCTGT-TGGCGCATTCTGGTTTGGTGGCTGTGTGCTTGTTCAAGCAGGCCCAGTTATGGCCGGAGTGTGTCAGTGGGTGGTTGCGTGTGTGGCACTTTTCAGCGCCAATAGTCAG0011110000000000110
Bunodera_luciopercae        TTGATTATAAGGCAATGTGGTGTTTAGGTCGTTCCGTAGAGACACTGCTCCTCTCTAAGTCCATCAATGAGTACGGTTGTACTGACATGGCCCATGGAGGGTGAAAGGCCCGTAAGAGTGGAGTTTTGATATGACAGTGTCTCTCTGGATTGACCTTGGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCCAAGGCTAAATACAAGCACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGTAC-TTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTTAGAGGTAAACGGGTGGAGTTGAACTGGAATCTCTGAGAATTCAGCTGGGGAATTTTGCTTGAGCTTGGTCAA-TTGGGCAGGGCCTCGAGGTATGCTTATCTGCATGTTCTGATCTTCGGATCGGGATGCGCGTTGCTCTTATCAAGGGCTGTGCGCCTTGGGTGTCCGGCTGGCTCATTCGCCAGTGCACTTTCTTGGAGTGATCACCACGACCGGCGCTGCTGCTGGGCTGTTATAGTTAAACCGGGCATTCTTCGTCCTTGTGGCGTTGGGTGTTCGACACGGCAGGTAACTGGGTT-CTTGCTTCGGCTTGTTT-CTTGGTGTATGCTGGCTTTAACGGTTCCATGTGGTGTGTCGGAGACGGCGGCTTGTGGTGTGTGCATGCGTGTCTATCTGT-TGGGGCATTCTAGTTTGGTAGCTGTGTGCTTGTTCAAGCAGGCCCAGTTATGGCTGGAGTGTGTCAGTGGGTGGTTGCGTGTGTGACACTTTTCAGGGCCAATAGTCTG1110011000000000011
Bunodera_mediovitellata     TTGGTTATTAGGCAATGTGGTGTTTAGGTTGTTCCGCAGAGACACTGCTCCTCTCTAAGTCCATCAATGAGTACGGTTGTACTGACATGGCCCAAGGAGGGTGAAAGGCCCGTAAGAGTGGAGTTGTGGCATGACAGTGTCTCTCTGGATCGACCTTGGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCCAAGGCTAAATACAAGCACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGTAC-TTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTTAGAGGTAAACGGGTGGAGTTGAACTGCAATCTCTGAGAATTCAGCTGGGGAATTTTGCTTGAGCTTGGTCAA-TTGGGCAGGGCCTCGAGGTATGCTTATCTGCATGTTCTGATCTTCGGGTCGGGATGCGCGTTGCTCTTATCAAGGGCTGTGCGCCTCGGGTGTCATGCTGGCTCATTCGCCAGTGCACTTTCTTGGAGTGATCATCACGACCGGCGCTGCTGCTGGGCTGTTATAGTTAAACCGGGCATTCTTCGTCCTTGTGGCGTTGGGTGTACGACACGGCAGGTAACTGGGAT-CTTGCTTCGGCTTGTTT-CTTGGTGTATGTCGGCTTTAATGGTTCTATGCGGTGTGTCGGAGACGGCGGCTTGTGGTGTGTGCATGCGTGTCTATCTGT-TGGCGCATTCTAGTTTGGTAGCTGTGTGCTTGTTCAAGCAGGCCCAGTTATGGCTGGAGTGTGTCAGTGGGTGGTTGCGTGTGTGACACTTTTCAGGGCCAATAGTCTG1110110000000011011
Bunodera_sacculata          TT????ATTAGGCAATGTGGTGTTTAGGTCGTTCCGCAGAGACACTGCTCCACTCTAAGTCCATTAATGAGTACGGTTGTACTGACATGGCCCATGGAGGGTGAAAGGCCCGTGAGAGTGGAGTCTTGGCATGACAGTGTCTCTCTGGATTGACCTTGGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGTTGGTAAACTCCATCCAAGGCTAAATACAAGCACGAGTTCTATAGCGAACAAGTTCCGCTAGGGAAAGTTGAAAAGTACCTTTGAAGAGAGAGTAAGCAGTGCGTGAAACCGCTTAGAGGTAAACGGGTGGAGTTGAACTGCAATCTCTGAGAATTCAGCTGGGGAATTTTGCTTGAGCTTGGTCAA-TTGGGCAGGGCCTCGGGGTATGCTTATCTGCATGTTCTGATCTTCGGGTCGGAATGCGCGTTGCTCTTATCAAGGGCTGTGCGCCCCGGGTGTCCGGCTGGCTCATTCGCCAGTGCACTTTCTTGGAGTGATCACCACGACCGGCGCTGCTGCTGGGCTGTTATTGTTAAACCGGGTATTCATCGTCCTTGTGGCGTTGGGTGCACGACACGGCAGGTAACTGGGTT-CTTGCTTCGGCTTGTTT-CTTGGTGTATGTCGGCTTTAACGGTTCTATGCGGTGTGTCGGAGACGGCGGCTTGTGGTGTGTGCATGCGTGTCTATCTGT-TGGTGCATTCTGGTTTGGTAGCTGTGTGGTTGTTC-GACAGGCCCAGTTATGGTTGGAGTGTATCAGTGGGTGGTTGCGTGTGTGGCACTTTTCAGGGCCAATAGTCTG1111111000100000011
Crepidostomum_cooperi       TTGGTTACTAGGCAATGTGGTGTTTAGGTCGTTCCGCAGAGACACTGCTCCTCTCTAAGTCCATCAATGAGTACGGTTGTACTGACATGGCCCATGGAGGGTGAAAGGCCCGTAAGAGAGGAGTTTTGGTATGACAGTGTCTCTCTGGATTGACCTTGGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAACTCCATCCAAGGCTAAATACAAGCACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGTAC-TTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTTAGAGGTAAACGGGTGGAGTTGAACTGCAATCTCTGAGAATTCAGCTGGGGAATTTTGCTTGAGCTTGGTCAAATTGGGCAGGGCCTCGGGGTATGCTCATGTGCATGTTCTGACCTTCGGGTCGGGATGCGCGTTGCTCTTATCAAGGGCTGCGCGCCCCGGGTGTCCGGCTGGCTCTGTCGCCAGTGCACTTTCTCGGAGTGATCACCACGACCGGCGCTGCTGCTTGGCTGTTTTTGTCAAACCGAACGTTCATCGTCCTTGTGGCGTTGGGTGGTCGGCACGGCAGGTAACTGGGGG-CTTGCTTCGGCTTGCTG-CTCGGTGTATGTCGGCTTTAACGGTTCTATGCGGTGTGTCGGAGACGGCGGCTAGTAGTGTGTGCGTGCGTATCTATCTGT-TGGCATATTCTGGTTTGGTGACTGTGTGCTTGTTCAAGCAGGCCCAGTTATGGCCGGGGTGTGTTAGTGGGTGGTTGCGTGTGTGGCACTTTTCAGGGCCAACAGTCTG1110000101001110112
;
END;

BEGIN SETS;
	CHARSET DNA (CHARACTERS = Bunodera_Matrix) =  1-817;
	CHARSET MORFOLOGICOS (CHARACTERS = Bunodera_Matrix) =  818-836;
END;
[ The following blocks are output data for analysis step 2793 ]
BEGIN TREES;
      TITLE Tb7567;
      LINK TAXA = TaxaForAnalysisStep2793;
      TREE Tree_1 = [&R] (Allocreadium_lobatum,(Crepidostomum_cooperi,((((Bunodera_eucaliae,Bunodera_inconstans),Bunodera_mediovitellata),Bunodera_sacculata),Bunodera_luciopercae)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2310]


END;