#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on November 10, 2026; 4:15 GMT

TreeBASE (cc) 1994-2008

Study reference:
Lartillot N., & Philippe H. 2006. Computing Bayes Factors Using Thermodynamic Integration.
Systematic Biology, 55(2): 195-207.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1452]

[ The following blocks are input data for analysis step 2810 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2810;
        DIMENSIONS NTAX=30;
        TAXLABELS
            Anopheles_gambiae
            Blastocystis_hominis
            Botryocladia_uvarioides
            Caenorhabditis_elegans
            Chlamydomonas_reinhardtii
            Chlorella_kessleri
            Cryptococcus_neoformans
            Cryptosporidium_parvum
            Dictyostelium_discoideum
            Entamoeba_histolytica
            Euglena_gracilis
            Gallus_gallus
            Gelidium_canariensis
            Giardia_lamblia
            Guillardia_theta
            Mastigamoeba_balamuthi
            Monosiga_brevicollis
            Neurospora_crassa
            Plasmodium_yoelii
            Porphyra_yezoensis
            Saccharomyces_cerevisiae
            Schizosaccharomyces_pombe
            Spodoptera_exigua
            Stentor_coeruleus
            Stylonychia_mytilus
            Tetrahymena_pyriformis
            Thalassiosira_pseudonana
            Trichomonas_tenax
            Triticum_aestivum
            Trypanosoma_cruzi
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M984]

	TITLE EF2;
	LINK TAXA = TaxaForAnalysisStep2810;
	DIMENSIONS NCHAR=627;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                     10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       ]
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Anopheles_gambiae             HGKSLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITIKSTAISMYFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLNKMDRALLELQLDPEDLYQTFQRIVENVNVIIATYNDRIDPSRGSVGFGSGLHGWAFTKQFAEMYSAMFKKLMNRLWGENFFNSKTKKWRSFVMYILDPIYKVFDAIMNYKTDEIPKLLEKILKHEDKDKDGKNLLKVVMRTWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGDEAAVAVKNCDPGPLMMYVSKMVPTSDKGRFYAFGRVFAGKVATGQKCRIMGPNFTPGKKEDLKAIQRTILMMGRYVEAIEDVPCGNICGLVGVDQFLVKTGTISDAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCESGEHIIAGAGELHLEICLKDLLSEKYDYDVTEARKIWCFGDGTGPNIVVDCTKGVQYLNEIKDSVVAGFQWASKEGVLAEENMRGVRFNIYDVALHADAIHRGGGQIIPTARRVLYASYITASPRIMEPVYLCEIQCPEAAVGGIYGVLNRRRGHVFEDSQVAGTPMFVVKAYLPVNESFGFTALRSNTGGQA
Blastocystis_hominis          HGKSLTDALVSKAGIISKKAAGDARFTDTRADEQERCITIKSTGISLYYLINLIDSPGHVDFSSEVTASLRVTDGALVVVDSVGGVCVQTETVLRQALAERIRPVLNKLDRVIAELQLDPEEAYHKLMKSVESVNVIIATYPDQVYPNQGTVAFGSGLQQWGFTRKFARLYAKKFGKMMERLWGDYFFDAENKKWRAFVQFVLDPVYGLYRALNEGRTEKYMKMLDTLLTSEEKDLRDKALVKRVMSKWLPAADALLEMIVLHLPSPVDAQKYRAPLLYDGDEACTAMKKCDPGCLMMYVSKMVPTADQSRFYAFGRVFSGIIRSGQKVRILGPKYSATNKSDLKSVQRTVIMMGRYVEQVADIPCGNTCGLVGVDQYILKQATLTSAMTIKMMKFSVSPVVRVAVEPKNPGDLPRLVEGLKRLSKSDPMVVVEAGEHIIAGAGELHLEICLKDLMSTTYGMDVELMRKIWAFGNGNGPNIFCEATHGVQYLNEIKESVVAGFGAACAAGPIVDEPCRNVLCKLMDVTLHADSIHRGMGQIMPPARRVVLGTMLKAEPILVEPVFLCEIQVPRAVSGGIYGVLTRRRGHVFEEIDEVGTPMMNIKSYLPVAESFGFTQLRGATAGQA
Botryocladia_uvarioides       HGKSLTDSLVAAAGIIAMANAGDQRLTDTRQDEQDRCITIKSTGISLYFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDSVEGVCVQTETVLRQALTERIKPVMNKLDRSFLELQLEPEDMYQNFSRIIENANVIMSAYMDQVYPEKGTVAFSAGLHGWAFTSRFARMYSKKFGKMTPRLWGDSFYNRKEKKWRAFNDFVIKPIKKIIDNCMSDKIEELEKILSSLLTTEDKELRQKPLMKRILQKWIPADQALLEMMVLHLPSPAEAQKYRAELLYEGDACCTAIRNCDPGPLMLYISKMVPSSDKGRFIAYGRVFSGTVSSGQKVRIMGPNYVPGTKKDLKSIQRTLLMMGRRTDSVDSVPCGNTVGLVGLDQVIVKSGTISEAFPLKDMKYSVSPVVRVAVEPKNPSDLPKLVEGLKRLAKSDPLVQTESGEHVIAGAGELHLEICLKDLLRDEYGVPEDAARKIWCFGDTTGANFLVDRAKAVQYLNDIKDSCVAAFQWATKEGVLCDENMRGVLFNIHDCTLHADNIHRGGGQIIPTCRRALYGAQLMAAPRLVEPVFLVEIQCPDQTVGSIYGVLTRKRGHVFEELQRPGTPMFNVKAYLPVSESFGFTALRSATSGQA
Caenorhabditis_elegans        HGKSLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLNKMDRALLELQLGAEELFQTFQRIVENINVIIATYGDMVDPSIGNVGFGSGLHGWAFTKQFAEMYAGKFGKLMKNLWGDRFFDLKTKKWRGFCQFVLDPIFMVFDAVMNIKKDKTAALVEKLLANDEKDLEGKPLMKVFMRKWLPAGDTMLQMIAFHLPSPVTAQKYRMEMLYEGDEAAVAIKTCDPGPLMMYISKMVPTSDKGRFYAFGRVFSGKVATGMKARIQGPNYVPGKKEDLKTIQRTILMMGRFIEPIEDIPSGNIAGLVGVDQYLVKGGTITDAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCESGEHIIAGAGELHLEICLKDLLAEKYEYDVTEARKIWCFGDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTALRSNTGGQA
Chlamydomonas_reinhardtii     HGKSLTDSLVAAAGIMAVEQAGDARLTDTRADEQERGITIKSTGISLYYLVNLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALAERIRPVLNKMDRCFLELMLEGEEAYTTYLRVIENANVIMATYQDQVYPDKSTVSFSAGLHGWAFTTTFARMYASKFGRMITKLWGDNFFDPATKKWRGFVQFIYEPIKQIIELAMKDAKDKLWPMLEKLLKSDDKELSGKPLMKRIMQSWLPANEALLEMIVYHLPSPAKAQRYRVDVLYEGDTYATAIRNCDPGPLMVYISKMIPTADKGRFFAFGRVYSGKVATGAKVRIMGANYIPGEKKDLKSVQRTVLCMGRKQEAVEDVPCGNTVALVGLDQYITKTATITDAFPMKAMKFSVSPVVRVAVEPKNASDLPKLVEGLKRLARSDPMVQCETGEHIIAGAGELHLEICLKDLLSEEFGWDKEIAKKIWCFADTNGANMMIDVTKGVQYLNEIKDSCVAAMQWACKEGVLAEENMRGIVFEFMDVVLHTDAIHRGGGQIIPTARRVIYAAELTAQPRLCEPVYLVEIQAPEQALGGIYSTLNTKRGMVFEEMQRPGTPMYNIKAYLPVVESFGFTSLRANTAGQA
Chlorella_kessleri            HGKSLTDSLVAAAGIIAFEQAGDQRLTDTRADEQERGITIKSTGISLYFLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLNKIDRCFLELMLDPEEAYLAYRRVIENANVIMATYADQTHPEAGTVSFSAGLHGWAFTTVFANMYAAKFGRMMEKLWGDNFFDATTRKWRGFCQFIYEPIKTVIEAAMNDNKDKLFDLLKKLLKPEDRELMGKPLMKRVMQTWLPAHEALLEMMIWHLPSPAKAQKYRVDVLYEGDTYATAVRNCDAGPLMMYVSKMIPAADKGRFYAFGRVFSGRIATGRKVRIMGPNYVPGQKKDLKTVQRTVLCMGRRQEAVEDVPCGNTVALVGLDQFITKNATLTDAHTIKAMKFSVSPVVRVAVEPKVASDLPKLVEGLKRLAKSDPMVQCETGEHIIAGAGELHLEICLKDLLSEEFGWDKELAKKILAFGDTTGPNMVTDITKGVQYLNEIKDSVVAAFQWASKEGVLAEENMRGIVFEVCDVVLHADAIHRGGGQIIPTARRSMYAAQLTAQPRLLEPVYLVEIQCPEQAMGGVYSVLNQKRGMVFEELQRPGTPIFNLKAYLPVIESFGFTSLRAATAGQA
Cryptococcus_neoformans       HGKSLTDSLVSKAGIIASSKAGEMRFTDTRQDEIDRGITIKSTAISMYFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQSLGERVKPILNKVDRALLELQVSKEDLYQSFCRTIESVNVIISTYTDMVYPEQGTVAFGSGLHGWAFSRNFAGRYSKKFGKLMPKLWGDNYFNPKTRKWRAFNMFVLDPIFRLFDSIMNFKKDEIPKLLEKLLTSEERDLEGKQLLKVVMRKFLPAGDSLLEMICINLPSPVTAQKYRVETLYEGDESAIGIRDCDPGPLMVYVSKMVPTSDKGRFYAFGRVFSGTVSSGPKVRIQGPNFVPGKKDDSKSIQRTVLMMGRSTEAIEDCPAGNIIGLVGVDQFLLKSGTLTTAHNMRVMKFSVSPVVQVAVECKNASDLPKLVEGLKRLSKSDPCVKTDSGEIIVAGAGELHLEICLNDLLADTYGWDVTEARKIWCFGDTTGPNVFLDGSKAVQYMNEIKDSCVAAFQWATKEGGVAEEPMRGVRFNILDCTLHADAIHRGGGQIIPTARRVCYAAQLLATPAFQEPMFLVEIAVPESAQGGVYSCLNVRRGHVFSAEQRPGTPMYTLKAYLPVSESFGFNALRAATGGQA
Cryptosporidium_parvum        HGKSLTDSLVCKAGIIASKAAGDARFTDTRADEQERCITIKSTGISLFFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDAVDGVCIQTETVLRQALNERIRPVLNKVDRALLELQWEAEDIYQNFTRVIENVNVIISTYSDQVFPEKGTVSFGSGLHGWAFTEKFARIYAKKFGKMMQRLWGDNFFNPETKKFRAFCQFIMEPICQLFSSIMNGDKAKYEKMLVNLLKGDDKALVDKPLLKKVMQLWLSAGDTLLEMIVTHLPSPAAAQKYRVENLYEGDETAKGIRNCDPAPLCMFVSKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPRYVPGGKEDLKNIQRTVLMMGRYVEQIPDVPAGNTVGLVGIDQYLLKSGTITTAHNIASMKYSVSPVVRVAVRPKDNKELPKLVEGLKKLSKSDPLVVCETGEHIIAGCGELHVEICLQDLLHDKYGFDKNAAMKIWCFGETTGPNIMVDVTTGIQYLTEIKDHCNSAFQWATKEGILCEEDMRGIRFNLLDVTLHADAIHRGAGQITPTCRRVMYAAALTASPRLLEPMFLVEISAPQEVVGGIYATLNQRRGHVFHEEPKSGTPQVEIKAYLPVADSFKFTTLRAATSGKA
Dictyostelium_discoideum      HGKTLTDSLIQRAGIIADKVSGDMRYMSCRADEQERGITIKSSSVSLHFLINLIDSPGHVDFSSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLNKVDRFLLELQLNTEEAYLSFRRAIESVNVIVGNTEDTVSPEKGTVAFGSGLHGWGFTGRFAKLYAAKFGKLMGRLWGDSYFDATAKKWRAFCQFVLEPIYQLTRAIVDEDAVKLEKMMKTLLAPEDAEIKGKQLVKAVMRKFLPAADAILSMIVTHLPSPLVAQKYRCANLYEGDECAVAIQKCDPGPLMMYVSKMVPTSDKGRFYAFGRVFSGTIRTGQKVRIMGPDYVPGKKDDLKSIQRTVLMMGRKTEQIEDCPCGNIVGLVGVDQFLVKSGTITVAHNIRVMKFSVSPVVRVAVEPKNPSDLPKLVEGLKRLAKSDPCVLCESGEHIVAGAGELHLEICLKDLLADNHEWDKNDAMNIWSFGEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTALRSHTAGQA
Entamoeba_histolytica         HGKSLTDSLVTLAGIISNEKAGVARYTDTRPDEQERCITIKSTSISMYFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERVKPIVNKVDRVILELKEEPEEAYQSFCRSIENVNVLISTYKDQVSPGEGTVAFGSGLHGWAFTEKFAKMWSAKFGRMLEKLWGDNYWDAKAKKWRGFVQFCFDPITKLFNAIMEGRKADYEKMLTNLLSADDKEKEGKELLKTVMKLWLPAGVTLLEMIVLHLPSPVVAQKYRTSNLYTGDEAAKAMANCDEGPLMMYVSKMIPTNDKGRFYAFGRVFSGTIRTGGKARICGPNYVPGKKDDCKNIQRTMLMMGRYTDPIDECPCGNVIGLVGVDQYLLKSGTITVAHIIKDMKFSVSPVVRVAVETKNPSDLPKLVEGMKRLSRSDPLCLCESGEHIVAGAGELHLEVCLKELLSEKYGWDVDEARKIWCFGDNCGPNLFVDVTKGIQYLNEVKDSIVNGFNNAMHDGVVCNEQIRGVRINLEDVKLHADAIHRGGAQMIPCARRCCFACVLTGAPSLLEPMYLAEIQCPESAIGGIYTVMSRRRGKIISEEQRPGTPLFNVRAYLPVCESFGFTALRSHTSGQA
Euglena_gracilis              HGKSLQDSLVAAAGIIAIQKAGDTRLTDTRSDEQERGITIKSTSISMYHLINLIDSPRHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERIKPVLNKMDRAILELQLDAEEAFQSFQRTIGSVNVVVATYNDQCYPEKGTVAFGSGLQGWAFTVRFARMYAKKFGKMMNRLWGDSFFDAKAKKWRAFCQFVWEPINQMFDAVMSDKTEKYQKMLTSLLSSDDKDLTGKKLLKSIMQKWLPAAEALLQMIVTHLPSPTKAQAYRAETLYTGDKYFKAIKECDPGPMCLYISKMVPTADKGRFIAFGRVFSGTVRTGQKCRIMGPNYEPGSKTDLKSIQRTVIMMGRYQEPVDDIPSGNLVGLFGVDQFVVKTATIVEAYPLKDMKYSVSPVVRVAVETKNPADLPKLVEGLRRLAKSDPLVQTETGEHIVAGAGELHLEICLKDLMADNHEWDAGDARKIWCFGDTSGPNVITDQTKGIYNLQEVKDSFIAAWQWATKEGVLCDENMRGLRYNLQDITMHADAMHRGGGQMIPTARRVMYASVLTAAPRLMEPSFLVEIQTVDHAIGGVYSVFLKPRGVIIGEEFRAGTPILNVKAYLPVQESFGFTALRQSTAGQA
Gallus_gallus                 HGKSLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITIKSTAISLFFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLNKMDRALLELQLDPEELYQTFQRIVENVNVIISTYGEMIDPVLGTVGFGSGLHGWAFTKQFAEMYVAKFADMMKKLWGDRYFDPATGKFRTFCQLILDPIFKVFDAIMTFKKEEAAKLIEKLLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELLYEGDEAAIGIKNCDPGSLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPNYTPGKKEDLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCESGEHIIAGAGELHLEICLKDLLAEKYEWDVTEARKIWCFGDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGVLCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYACVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTALRSNTGGQA
Gelidium_canariensis          HGKSLQDSLVAAAGIIAMANAGDQRLTGTRQDEQDRCITIKSTGISVYFPVNLIDSPGHVDFTSEVTAALRVTDGALVVVDSVEGVCVQTETVLRQALTERIKPVMNKLERSFMELQLEAEDMYQNFTRIIETANVIMSTYQDQVYPDGGTVAFTAGLHGWGFTKQFARMYMAKFGKMTKRLWVDNYFEAKEKKWRAFCQFIILPIKKIIELCMSDIVDELTKLLSSLLNTEVQGSRQKQLMKRVLQKWLSADQALLEMMVLHLPSPATAQKYRAEVLYEGDACCTAIRNCDPGPLMLYISKMVPTSDKGRFYAFGSVFSGRVAAGIKVGIMGPNYVPGTKKDLKPIQRTLLMMGRRQEPVDDVPCGNTVGLVGLDQVIVKSGTITRSFPLKDMKYSVSPVVRVAVEPKNPSDLPKLVEGLNRLAKSDPLVQTESGEHIIAGAGELHLEICLEDLLRDEYGVEEDAARKIWCFGDTTGANILVDITKGVQYLNEIKDSLVCCIEWASQEGCLLHENMRGVLCNMHDCQLHADSMHRGGGQIDPTGRRDLYGAQLMAQPKMSEPIFLAEIQCPTAVSSSIYGVLTRRRGHIDVEIPRIGTPMSNVKGFLPVSESFGFTALRAATSGQA
Giardia_lamblia               HGKSLTDSLIAHAGIISMGSAGNTRFTDTRQDEKDRCITIKSTGVSLYYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCAEGVCVQTETVLRQALSERVIPCLNKVDRVIMELKLSGEDAFLMFEKTIGEVNQLIATYQDCVDPSRGNVAFGSGLHGWGFTTHFARIYTKKFGTWMKNLWGNRFLNEKTGKWRGFAIYVMDPILQLFDAVMTEQKKKYTKMLKQLLTPDEEDMTGKRLLKAVMQKFLPAADALLEMIIVHLPSPKKAQQYRVDTLYTGDPAAEAIRNCDPGPLMLYVSKMVPTVDKSRFFAFGRVFSGVVQTGQKVHIMGPEYHPGKKDELKNIQRTILMMGSRIEQIDDVPCGNTVGLVGIDQYLVKSGTISQAHSIKPMKFSVSPVVRVAVEPANPKDLPKLLEGMKRLDKSDPCVMCDENQNIIAGAGELHLEICLKDLLTDKYGWDSDEAKQIWSFGVGASSNLILEATKGVQYVKESKEHIVSGFQIVCRNGVLAGEELVGTCFKLRDATFHADAIHRGAGQLTPATRRGLYAACLYASPMLMEPFYLVDILAPEGCMGGIYSTMSKRRGVVISEEPREGQPLTEVKAHLPVAESFGFDALRAATSGQA
Guillardia_theta              HGKSLTDSLVASAGIISLDSAGEARLTDTRADEQERGITIKSTGISLYFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDCIEGVCVQTETVLRQALLERIKPVLNKLDRAFLELQCENEEMYRTFYKVIENVNVIMVTYQDQVSPEVGNVAFSAGLHGWAFTSQFARMYAKKWKKLTLKLWGDNFFDPSSKKWRSFSHFILNPIKKIINYAMSDKVDEIVKAMEGFITNDDKSLKQKNLMKRVLQKWLPADQALKEMIIHHLPSPARAQFYRVGNLYEGDEFAESIKKCDSGPLMVYISKMIPSSDKGRFIAFGRVFSGTIKTGQKIRIMGSNYIPGKKTDLKNVQRVLLMMGRKVEIIDNLPAGNTVGIVGIDQCLVKSGTISNAYPMKNMKYSVSAVVRVAVEPKNPSDLPKLIEGLKRLSKSDPLVQCESGEHIVAGAGELHLEICLKDLLKQKFDMNEEDIKKIWCFGDGNGPNFLVDRTKGLQYINEIKDSCNSGFQWATKEGVLCGENIRGVLFKIVDVTLHADAIHRGGGQIIPTARRCFHGAQLLANPKLLEPVYLVEIQCHENSVGSIYGVLNRKRGHVFEESQRPGTPIFNVKAYLPVQESFGFTALRAATGGQA
Mastigamoeba_balamuthi        HGKTVTDLLVCKAGIIASAKAGTVSSTPPGGEEQERGIMTKSTVVPLYFLISLIDSPTHVDMSSEAATALRVSDGALVVVDCVEGVCVQTETVLRQALGERIKPCLDNVDCMLGELQNDPEDMYQSFSRAIESVNAVIATFHDQVDPTKGTVAFGSGLHRWAFSNTFARMYAQKFGKMMERLWGDNYFDTNGRKWRSFCRFILDPIFEMASAIMGDDKPVIERMLTALLKPEEKCLLQKNLLMAVMRTWLPAADCLLAMAVLHLPCPTTAQEYRCETLYTGDPYATAFRKCDPGPLIMYVSKMVPTNDRGRFYAFGRVFSGTIHTGMQVRIMGGNFTTGKKDDLQTIQRTLLMMGHTTQPVEDCPSGNVIGLVGVDQLLVKSGTITDAWPIKDMRFFASPVVRVAVEPKNPADLPKLVEGLKCLAKSDSLCQCVSGEFIIACVSEQHLEICLKVLLADKYGWDVGDARKIWCFGDTKGANCLVDMTKAVQYLLEIKDHCVSAFQWATKEGTLCDENVRGVRYNLYDVALHADAVHRGGGQIIPTARRCYCACLLTAEPRLLEPVYLVDIQCPETVIGGIYSVLNRRRGTIVAEEPRPGTPLCNIRAYLPVLESFGFTALRANTAGQA
Monosiga_brevicollis          HGKSLTDSLVSKAGIIAGAKAGETRFTDTRQDEQDRCITIKSTAISLYFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDAVSGVCVQTETVLRQAIAERIKPVLNKMDRALLELQLEQEDLFQTFRRIVESINVIIATYGDQVDVSAGTVGFGSGLHGWAFTKQFATMYASKFGKLMKRLWGDQFFNAKEKKWRGFNMFVLAPIFKVFDSVMNFKKDDTAKLITKLLSADEKELEGKPLMKAMMRRWLPAGDAMLEMITIHLPSPVTAQNYRMEMLYEGDAAALGIKNCDPAPLMMYVSKMVPTTDKGRFYAFGRVYSGKVATGMKARIMGPNFVVGKKDDLKTIQRTILMMGRFIEPIEDVPCGNICGLVGVDQFLVKTGTLTGAHNMKVMKFSVSPVVRVAVECKNPSDLPKLVEGLKRLAKSDPMVQCESGEHIVAGAGELHLEICLKDLLADNFEWDVTEARKIWCFGEGTGPNVIVDVSKGVQYLNEIKDSVTTGFNWASKEGVLADENMRAIRFDLHDVTLHADAIHRGGGQIIPTARRVLYACCLTAQPRLMEPVFLVEIQCPETAMGGVYSVLTRRRGMVFEENPVSGTPMYNVKAYLPVNESFGFDSLRAGTGGQA
Neurospora_crassa             HGKSLTDSLLAKAGIISSGKAGEARATDTRADEQERGITIKSTAISLYFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTVEGVCVQTETVLRQALGERIKPVVNKVDRALLELQVSKEDLYQSFSRTIESVNVIISTYFDQVYPDRGTVAFGSGLHGWAFTRQFATRYAKKFGKMMERLWGDNYFNPKTKKWRAFNQFILDPIFKIFSAVMNFKKDEVAALLEKLLATDDREKEGKQLLKAVMKAFLPAADCLLEMMILHLPSPVTAQAYRAETLYEGDEAAMAIKTCDPGPLMLYVSKMVPTSDKGRFYAFGRVFAGTVRSGLKVRIQGPNYTPGKKEDLKAIQRTVLMMGGKVEPIDDMPAGNIVGLVGIDQFLLKSGTLTTAHNMKVMKFSVSPVVQRSVQVKNAQDLPKLVEGLKRLSKSDPCVLTESGEHVVAGAGELHLEICLNDLLADDFGWDVTDARKIWAFGDTNGANLLVDQTKAVQYLNEIKDSVVSGFQWATREGPIGEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATLLAEPSLLEPVFLVEIQVPEQAMGGVYGVLTRRRGHVFGEEQRPGTPLFTIKAYLPVMESFGFNGLRAATSGQA
Plasmodium_yoelii             HGKSLTDSLVSKAGIISSKHAGDARFTDTRADEQERCITIKSTGISMYFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLYQALGERIKPVLNKVDRALLELQMEVEDIYQTFARTIESVNVIISTYTDQVYPEKGTVSFGSGLQGWAFTETFSRIYSKKFGKMMQRLWGNSFYDAKTKKWRGFCQFIMEPILNLCQSIMNDDKEKYTKMLQNILKGDDKLLTGKQLLKKAMQLWLPAGDTLLEMIVTHLPSPATAQKYRVENLYEGDEAANAIRNCDPGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPHYVPGEKTDLKNIQRTVLMMGRYTEQVQDVPCGNTCCLVGVDQYIVKSGTITEAHNIADMKYSVSPVVRVAVKPKDSKQLPKLVDGLKKLAKSDPLVLCESGEHIISGCGELHIEICLKDLLHSNYQWDKNLALKIWAFGETIGPNLLTDNTSGIQYMNEIKVHCVAAFQWASKEGVLCEENMRGCEFRMLDVHMHADAIHRGAGQIMPACKKCIYACELTAVPRLVEPIYLVDISCPQDVVSGVYSVLNKRRGIVISEDQKLGTPLLKIQAHLPVAESFGFTSLRAATSGQA
Porphyra_yezoensis            HGKSLTDSLVAAAGIIAMANAGDARLTDTRQDEQDRCITIKSTGISLYFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDSVEGVCVHTETVLRQALTERIIPVMNKLDRSFLELQLEPEEMYQNFQRIIENANVIMATYQDQVYPEKGTIAFSAGLHGWAFTTRFARMYAKKFKKMLGRLWGDNFFDRANKKWRAFCEFVIKPIKKIIELAMSDKVDDLVKLLSTLLTTDEKELRQKKLMKRVLQKWLPADQALLEMMITHLPSSAKAQKYRVDTLYEGDVCATSIRNCDPGPLMLYISKMVPAADRGRFIAFGRVFSGTVRTGTKVRIMGSNYEPGTKKDLKAVQRAMLMMGRRTEAVDSVPCGNTVGIVGLDAVILKTASISDAFPLKDMKYSVSAVVRVAVEPKNPGDLPKLVEGLKRLSKSDPLVQCESGEHIIAGAGELHLEICLKDLLRDEYGMDEDAAKKIWAFTDSGSACLMMDRSKAVQYLLEIKDSMVSAFQWATREGVLCDENMRGLSFNITDVTLHADAIHRGAGQIMPTARRCMYGAQIKASPRLLEPVYMVEIQCPEASVGSIYGVMSRKRGHVFEEVQRPGTPMYNVKAYLPVQESFGFTALRSATSGQA
Saccharomyces_cerevisiae      HGKSLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVNKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADQVYPARGTVAFGSGLHGWAFTRQFATRYAKKFGKMMDRLWGDSFFNPKTKKWRAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGDANCIAIKNCDPADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTESGEHIVAGTGELHLEICLQDLMADDYGWDVTDARKIWCFGDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGLRQATGGQA
Schizosaccharomyces_pombe     HGKSLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISLFFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIRPVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDQVFPDKGTVAFASGLHGWAFTRQFANRYAKKFGKMMQRLWGENYFNPKTKKWRAFNMFILDPIYRIFDAVMNSRKDEVFTLLSKLIKPDEKELEGKALLKVVMRKFLPAADALMEMIVLHLPSPKTAQQYRAETLYEGDECAVGIRNCDAAPLMIYVSKMVPTSDRGRFYAFGRVFSGTVRSGLKVRIQGPNYVPGKKDDLKAIQRTVLMMGSRIEPIEDCPAGNIIGLVGVDQFLVKSGTLTVAHNMKVMKFSVSPVVQVAVEVKNGNDLPKLVEGLKRLSKSDPCVLCESGEHIVAGAGELHLEICLKDLMADEFGWDVTDARKIWCFGDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGLRQATAGQA
Spodoptera_exigua             HGKSLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPILNKMDRALLELQLEAEELYQTFQRIVENVNVIIATYNDRVDPSKGSVGFGSGLHGWAFTKQFSEMYADKFKKLMNRLWGENFFNAKTKKWRSFCMYVLDPIYKVFDAIMNFKKEEIDGLLTKIIKHEDADKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGDEAAIGIKNCDPAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCESGEHIVAGAGELHLEICLKDLLADKYEYDVTEARKIWCFGEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGFTALRSDTGGQA
Stentor_coeruleus             HGKVLLDSLIAKAGIIAESNAGDTRYTDTRKDEKERGITIKSTGVSLFYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIKPVLNKVDRNLLELQLDPESMYQNFVRTIEEANSIISTYDDMVDPTKGNVAFGSGLMGWAFSKKFSQIYAKKFGKMIEQLAGEWYFDAEGKKMRALCQFVVEPIQRLAKAVMEGNNEALTKILKTLLKAEDKELTDKRLLKRIMQKWLNAADCLLDMIVFHLPSPKVSQRYRVDYLYEGDECAQAIRNWRLGPLMMYVSKMVPSQDKGRFVAFGRVFSGTISAGQKVRIMGPNFIAGKKDDLKNIQRTVLMMGRYTEHIPDVPCGNTVGLVGVDNYLAKTGTISDAHPLKNMKYSVSPVVRVAVKPKNAADLPKLVEGLKKLSKSDPLVQCETGEHIVAGCGELHVEICVHDLLQDDFNWDPNDAKKIWCFGETIGANMLVDTTKGVQYMNEIKDSLESGFQWATKEGCMSGENMRGVRFNVLDAYLHADAIHRGGGQLIPTARRVCYASFLTAKPALQEPMFLVEIQCPAEVIGGVYQCLSGRRGIVNSEEPVSGTPLTMVKAYLPVAESFGFAALRSQTSGQA
Stylonychia_mytilus           HGKSLTDSLIAKAGIISEAKAGEARFTDTRADEQERGITIKSTGVSLYYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDYVEGVCVQTETVLRQALGEKIKPVLNKIDKGILELQVEGETMYQNFQRVIENANVIITTYEAQVDPCKGTFAFGSGLFGWAFTTRFAEIYADKFKKMMQKLWGDNFYDAKGKKWRCFVQFIMEPIVRLCRNIMDNNKEAVYKMLTHLLKPEDRDKQVKDLFKAVFQKWINAADALLEMIVMKLPSPLVAQRYRAAYLYEGDPCGQAIKNCDQGPLMVFISKMVPTSDKGRFYAFGRVFSGVVQTGQKVRIMGPNYTPGSKNDLKNIQRTVLMMGGKVEAVPDVPCGNTVGLVGVDQYLMKQGTISDAHNIRVMKYSVSPVVRVAVEPKHASDLPKLVEGLKKLSKSDPLVLCESGEHIIAGCGELHVEICLKDLLADKFGWDINDAKKIWCFGETSGPNLLVDQTKAVQYLNEIKDSCELPFQWATKEAVMTEENMRGIRFNIMDVALHADAIHRGGGQIIPTARRVYYAAQLTAEPRFVEPIFLCEITSPDDAMGGIKKTLAQRRGIVIGEEPISGTPTQNVKAYLPVAESFRFTQLRSITTGQA
Tetrahymena_pyriformis        HGKSLTDSLLARAGIISESNAGKACLMDTDPKEQEMGITIKSTGVSLYSIINLIDSPGHIDFSGEVTAALRVTDGALVVVDAVEGVAVQTETVLRQAMQEEIKPVLNKIDRSILELKHDGETMYQNFIRVIDMVNVIIDTYNQLVLPDEGSVAFGSGKECWAFTTKFARIYAKKFGKMMKKLWGDNFFDGVGKKWRAFAQFIMDPICKLANAVMDNDLEMMEKMLKTLLSQEDKELRGKHLLKAVMSKWQNAADTILEMMVIHLPSPRKAQQYRTSYLYEGDEIAKSMRACDPGPLMMYVSKMVPTSDKGRFYAFGRVFSGTIATSQKVRILGPNYQPGKKEDLKTLQRTLIMQGRTTEYIPDVPCGNTVGLVGADQFILKTGTITEAHTIRSMKYSVSPVVRVAVNVKNAGDLPKLVDGLKKLSKSDPLVICSTGQHIIAGCGELHIEICLKDLLHEKYSWDRTEAGKLWSFGENAGPNLVVDQTKGIQYVNEIKDSLNSAWQWASKEAPMTEEGMRGVRMNLLDCVLHADAIHRGAGQILPTARRLFYACELTAEPRLQEPIFTAEITAPQDAMGGVYNCLNQRRGTINEEEQVQGTPMSIVKAFLPVAESFGFTALRGLTQGQA
Thalassiosira_pseudonana      HGKTLTDSLVQKAGIISSKAAGGARYTDTRKDEAERGITIKSTGISMFYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQAISERVKPVLNKVDRALLELQLPAEELYQAFCRAIESVNVIVAMYNDQVDPTKGSVAFGSGLHQWAFTKRFAKTYGAKFNKMMAKLWGDWYFDAGRKVWRAFCQFIATPITTLFEAIMAEKHKKVEKMLKAILKSEEKELVGKALLKRVMQKWLPAGDTVLEMIVLHLPSPFKAQQYRVDTLYNGDATATAIRTCDTAPLCMYISKMVPTSDKGRFYGFGRVFSGTIATGQKVRILGPNYVPGKKTDLKNIQRTVIMMGRYTEQVADVPAGNTCALVGVDQYLLKTGTIVDAHTIKSMKFSVSPVVRCAVEPKNSADLPKLVEGMKRLSKSDPMVLCESGEHIIAASGELHLEICLQDLLADDFGWDVSEARKIWAFGEGTGPNLFVDTTKGVNYLLEIKESVVGGFAWATQNGPLCEEQMRGTRFNLMDVVLHADAIHRGMGQIMPTARRVCFSSMMTAEPGLLEPVYLCNISVPQDAMGNVYGVLTQRRGHVFSEEQRPGTPQMTLLAYLPVMESFGFTALRSNTGGKA
Trichomonas_tenax             HGKSLTDSLIARAGIISQENAGEMRFTDTRPDEQERCITIKSTGVSLYFLINLIDSPGHIDFSAEVTAALRVTDGALVVVDCIEGVCVQTETVLRQALSERIKPIVNKIDRSLLELNAEPEDMYQQYTKSIDMVNVIIATYTDTVSPAKGTVAFGSGLHSFGFTTKFARIYSTKFGKLIPQVWGERFYDPTSKCFRSFCQFILKPIVALSRAIMNGDKAKYTSMFKTLLHDDDLHKEGRELLSAVYRRWIPMSEALLEMIVLHLPSPVKAQAYRAETLYTGDACADAIRKCDPGPLMLYVSKMVPTSDKGRFYAFGRVFSGTVATGQRVRVMGANYVPGGKDDLTNIQRTVLMMGRKVENLRDCPCGNTIGLVGIDQYLVKSGTISEACPIKAMKFSVSPVVRVAVEPKVAQDLPKLVEGLNRLAKSDPCVQVETGEHIIAGAGELHLEICLKDLLQNDFGWEQNDARRVWSFGDSNGPNLIAGTTKSAEYLQEVKEHFVSAFQWATKLGVLAEEPLRGVRFNVVEVFLHADAAHRNGGQMVPTGRRVLYASEYTANPTLVEPVYLCEISAPITVCGGVHSILSKRRGRAFDQTQRDGTPLMNIKAYLPVMESFGFDKLRGATSGQA
Triticum_aestivum             HGKSLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLFYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLNKMDRCFLELQVEGEEAYQTFSRVIENANVIMATYEDQVYPEKGTVAFSAGLHGWAFTTNFAKMYASKFGKMMERLWGENFFDPATKKWRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLMKADEKELMGKALMKRVMQTWLPASNALLEMMIYHLPSPSKAQRYRVENLYEGDVYATAIRNCDPGPLMLYVSKMIPASDKGRFFAFGRVFSGRVATGMKVRIMGPNYVPGQKKDLKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTDACPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCESGEHIIAGAGELHLEICLKDLLSEEFGWDKDLAKKIWCFGETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSLRAATSGQA
Trypanosoma_cruzi             HGKSLSDSLVGAAGIIKMEDAGDKRIMDTRADEIARGITIKSTAISMHFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERIRPVVNKVDRAILELQLDPEEAYQGFVKTLQNVNVVISTYNDQVYPEKGTVAIGSGLQAWAFSTRFAKMYAAKFGKMCERLWGDNFFDAKNKKWRAFCQFCLDPIYQIFDAVMTEKQEKVDKMLKSLLTADEREQVPKKLLKSIMMKFLPAAEALLQMIVAHLPSPKKAQSYRAEMLYSGDKYYVGIKNCDPAPLMLYISKMVPTADRGRFFAFGRIFAGKVRSGQKVRIMGNNYIFGKKQDLKPVQRTVLMMGRYQEAVEDMPCGNVVGLVGVDKYIVKSATITSPHPLRDMKYSVSPVVRVAVEAKNPSDLPKLVEGLKRLSKSDPLVVCESGEHIVAGAGELHLEICLKDLLADKFDWDVAEARKIWCYGDNRGPNVVVDVTKGVQNMSEMKDSFVAAWQWATREGVLCDENMRGVRINVEDVTMHADAIHRGGGQIIPTARRVFYACCLTAAPRLMEPMFQVDIQTVEHAMGGIYGVLTRRRGVIIGEENRPGTPIYNVRAYLPVAESFGFTALRAGTGGQA
;
END;

[ The following blocks are output data for analysis step 2810 ]
BEGIN TREES;
      TITLE Tb7584;
      LINK TAXA = TaxaForAnalysisStep2810;
      TREE EF2_mbpostcons = [&R] (Mastigamoeba_balamuthi,((Dictyostelium_discoideum,(((Monosiga_brevicollis,((Anopheles_gambiae,Spodoptera_exigua),(Gallus_gallus,Caenorhabditis_elegans))),(Cryptococcus_neoformans,(Neurospora_crassa,(Schizosaccharomyces_pombe,Saccharomyces_cerevisiae)))),(((Trypanosoma_cruzi,Euglena_gracilis),((Guillardia_theta,(Porphyra_yezoensis,(Gelidium_canariensis,Botryocladia_uvarioides))),(Triticum_aestivum,(Chlamydomonas_reinhardtii,Chlorella_kessleri)))),(((Stentor_coeruleus,(Tetrahymena_pyriformis,Stylonychia_mytilus)),(Cryptosporidium_parvum,Plasmodium_yoelii)),((Blastocystis_hominis,Thalassiosira_pseudonana),(Trichomonas_tenax,Giardia_lamblia)))))),Entamoeba_histolytica));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2326]


END;