#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on November 09, 2026; 2:53 GMT

TreeBASE (cc) 1994-2008

Study reference:
Lartillot N., & Philippe H. 2006. Computing Bayes Factors Using Thermodynamic Integration.
Systematic Biology, 55(2): 195-207.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1452]

[ The following blocks are input data for analysis step 2811 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2811;
        DIMENSIONS NTAX=40;
        TAXLABELS
            Agrobacterium_tumefaciens
            Aquifex_aeolicus
            Bacillus_subtilis
            Bdellovibrio_bacteriovorus
            Bifidobacterium_longum
            Borrelia_burgdorfer
            Buchnera_aphidicola
            Burkholderia_cepaciar
            Campylobacter_jejuni
            Chlamydophila_pneumoniae
            Chlorobium_tepidum
            Chloroflexus_aurantiacus
            Chromobacterium_violaceum
            Clostridium_perfringens
            Desulfovibrio_desulfuricans
            Escherichia_coli
            Exiguobacterium_sp
            Gemmata_obscuriglobus
            Geobacter_sulfurreducens
            Gloeobacter_violaceus
            Helicobacter_hepaticus
            Heliobacillus_mobilis
            Leptospira_interrogans
            Magnetococcus_sp
            Magnetospirillum_magnetotacticum
            Microbulbifer_degradans
            Parachlamydia_sp
            Pediococcus_pentosaceus
            Pirellula_sp
            Porphyromonas_gingivalis
            Propionibacterium_acnes
            Rhodobacter_capsulatus
            Rhodothermus_marinus
            Streptococcus_mutans
            Synechocystis_sp
            Thermoanaerobacter_tengcongensis
            Thermobifida_fusca
            Thermosynechococcus_elongatus
            Thermotoga_maritima
            Thermus_thermophilus
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M986]

	TITLE DLIG;
	LINK TAXA = TaxaForAnalysisStep2811;
	DIMENSIONS NCHAR=430;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                            10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430]
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Agrobacterium_tumefaciens            LAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAAFPALVRADSPSKKVGFAPIVHARPMLSLDNTFEPKIDGLSMSIRYENRLKTAATRGDGTTGENVTANIRTIIPNELEVRGEVYMAKSDFLALNYVNPRNTASGSLRQLDANVTAKRKLRFFAYRPDLDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVALTPITVGGVVVTNATLHNADYIIRIGDTVIVQRAGDVIPQVLDVPEKCPVCHFVSRNAFDIEGLGTKQIDFFIKTAPDIFTLVSVKKLFDAIDARRLHRLIFALGIRHVGETTAKLLARSYLNSIDGIGEVVARAIIEFYLIRELGKTVVFTGSLRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDE
Aquifex_aeolicus                     LREVIRYHDYKYYVEANPVIPDYDYDRLFRALKEIEKKYPELITPDSPTQRVAFPTVKHYTPMLSLDNAYEPKLDGAGIALVYENDFVRGATRGDGEYGEDITNNLKTIIPLKAEIRGEVVIRKDEFQKLNFANPRNAAAGSIRQKDPKEVAKRNLEAIVYRDSYPYEIDGMVVKVNDRRLWKVLGYTSHHPRWAIAYKFKPRRAVTKLVDVVFQVGRTGTITPVGLEPVELGGVTVSSVSLFNEDFIIRIGDWVVVERAGDVIPYVVEVPKYCPSCHWASRDAMDIRGLGDATIKLLAKDVGDLYYLKSAMNLLKAIEESKLDRVLYGLGIRYVGQTTAKKIAEIILMRLEGIGYKVARSIKEFFLEKAGGKTFVFTGTLREKAGEIVEMLGGKFSNSVTSKTDYLVVGKDPGTKLSKAKKYGVKTITE
Bacillus_subtilis                    LRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSPTQRVGFQKVTHGTPMLSLGNAFELKIDGLAVSLRYEDGFVRGATRGDGTTGEDITENLKTIIPLKMEVRGEAYMPKRSFEALNFANPRNAAAGSLRQLDPKIAAKRNLDIFVYRADLPYEIDGIVIKVDSLDQQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTALEPVKVAGTTVSRASLHNEDLIIRILDKVVVKKAGDIIPEVVNVPTECPECHFVSRNAMNIDGLGERVITQLVRNVADLYKLKSTENLISSIQKSKLERLLFGLGIRFIGSKAAKTLAMHFLLAVDEIGEKMADAVITYFLQELGGKTIVLTGKLRNEAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNE
Bdellovibrio_bacteriovorus           LKKIISEHDHNYHVLDKPTITDYEYDQLFAELLDIEKNPKGLDLSDSPSQRVGFTKAQHRLPMLSLANSYELKFDGLSMELIYENGLVRAITRGDGTVGEDVTHNIKTIIPLKLEVRGEVLMFKEDFARLNFANPRNAAAGTVRQLDSRIAASRPLRFFGYRPKLPFDIDGVVIKVNSLRLQEDLGLVARSPRWATAAKFKPEQAQTTVEDIVVQVGRTGALTPVAMKPVKVGGVTVTNATLHNQDEIIRIGDTVIIQRAGDVIPEVVEVPERCPACHFVARRAMNIDKVGDRLIETLLTRFSDFYRLKSADNIIKSIENSKLARFIFALGIRFVGEQTGKHLADHFLLQVPEIGAKVAKSIRDWTMIELGGMSFLITGTLRDDAKDLIERNGGKILGSVSSKLNYLVVGDDPGSKVEKAQGLGVKIISW
Bifidobacterium_longum               VAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRVGFTSVRHPSRMMSLDDVFEVKIDGLALNLIYRNGLEQGLTRGDGVTGEDITLNVRTIIPANLEIRGEVFMRWDDFHTLNFANPRNAAAGSLRQKDPRITATRRLSFYAHRGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTPVALKPVYVAGSTVARTTLHNGFEVILIGDTVVVRKAGDVIPELVGPPEFCPSCSLASRKAFDIEHLGEQSAIALLSNESGLFNLENTRKMFDEMDKARLWRVLVALSIRRLGPPTARLIASAMLTAIDGVGPEIAESVVNWFWQAAGGKTVVVTGSLRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSE
Borrelia_burgdorfer                  LKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLKFGFKEVEHSAPILSLDKVYEPKIDGCSIVLYYKDGLEKALTRGNGKFGNDVTINVRTIIPLFLVLRGEVYITKENFLKINYTNSRNLASGILRRVDSREVANFPLNIFIYRDSFEYEIDGVVLKVSDFALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVAIDKVFVSGAFITSATLHNQDYILNVGDVVKVSRRGDVIPAVEMVPDNCPACYFCSKNCMDIEGFSDKIISFLIFSEIDLYTFRKINNLINSIEASKFSKLLLSMGIKDLGENTIRLLFLNNLLKIKGIGEKIALNIIEAFFENLEGKKFCITGTFRSIIIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSF
Buchnera_aphidicola                  LRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPTQKVGFKKIKHFSPMLSLENTFELKLDGVAISIIYEEGFVRAATRGDGFEGENITSNARMIIPLKLEIRGEVFMLKSNFIKLNFSNPRNAAAGSLRHIDPNITAERKLIFSCHRNFLDFDIDGIVIKVNSLELQKKIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAFNPVYISGVMISKASLHNKNEILHFNDTITICRSGDVIPRLLNVPSFCPVCHFFSKKSLYVVGLGPKIINELVKNPIDFFYLRKSIKIINSIKKCKLKCFIYALGIPGVGEVVAGKIANYFLNCISGVGKIISNNIFNYFLIKQANKKIVLTGVFRIELKTILLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQ
Burkholderia_cepaciar                LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVGFTPVVHDAPMLSLNNGFELKFDGLAISLRYEQGFVQASTRGDGTTGEDVTENVRTIIPLKLDVRGEVLMFKRDFARLNFANPRNAAAGSLRQLDSKITAQRPLSFFAYRESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVALEPVFVGGATVTNATLHNEDEVIRIGDTVIVRRAGDVIPEVVGAPTECPVCHFAQRRALDIDGLGEKIIDQLVRTPADLFNLKSAQNLLDSLEKAKLARFIYGLGIRHVGESTAKDLAKHFLLEVNDVGPIVAESLHQFFLRAPGGKTVVLTGTLRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPVLDE
Campylobacter_jejuni                 KVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSPTQKIAFKKIAHLKRMWSMEDVFEPKFDGASLNLLYENGLVSGATRGDGEVGEDITLNVFEIIPKNIEIRGEVVILKDDFEKINFANPRNAASGSLRQLDTSITKERNLKFYPWREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVALEPVNLDGVVVKSATLHNFDEIVKINDFVSVIRSGDVIPKITKVPKLCPTCHFVSKKCLNIDGLGENIVELLITTLESIFHLKKINNLLNAIEQARLFRFITALGIEHIGEVAAKKLSLSFYANLEGFGEQMALSLCEFTK???IGKTFVITGTLRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDE
Chlamydophila_pneumoniae             LCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLWSPSTRLGFSVVSHKEPMLSIANSYELKIDGIAVAIRYEDRLVQALSRGNGKQGEDITSNIRTILPLRLEVRGEVFFSYSTFQIINFANPRNAAGGTLKLLSPQEVAKRKLEISIYRASLPMEIDGAVIKVDSLASQRVLGATGKHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVALTPVLLSGSLVSRASLYNEDEIIRIGDTVCVAKGGEVIPKVVRVPEFCPVCFFVGRGALNIDHLGVKVITKLVHTCADLFQLRSARNILESIEQAKLDRFLVALGIPLIGIGVATVLAGHFLLSLEGIGEKVAHAIAEYFMQDLGGKAFVITGTLRLDAETAIRNCGGKVGSSVSKQTDYVVMGNNPGSKLEKARKLGVSILDQ
Chlorobium_tepidum                   LRAEIERHNRLYYLEAKPEISDFEFDKLLKRLIMLEKEFPELVTPDSPSQRVGFPTVVHRDPMLSLSNTYELKYDGVAISLLYRDGLVCGSTRGDGRQGDEITANLRTIIPLRLEVRGEVYMRKDDFERLNFANPRNATAGTLKLQDSAEVARRRMSFVAYRWTLPYETDGVVLKLNEVSLWERLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVALKPTRLAGSIVSRSTLHNFDEIVRIGDHVMIEKSGEVIPKVVSVPSECPVCHFASRNALDIQNLGESLVTQLVSDAGDLYSLKSAQNVLDALEKSKYARLLFALGIRHVGAATARELAHACLAAVPDIGPVIAASIRDFFLAEAGGQSVIFTGALRQEAEEMVRERGGRIVSSVSKKTTLVVAGKEAGSKLEKAIKLGVKVIDE
Chloroflexus_aurantiacus             LRSLIRRYDYHYYVLDDPIVSDAEYDALMTELRALEAAHPELITPDSPTQRVSFAKVQHPQPMLSLGNAFEPKIDGLAVALTYRDGLVQGATRGDGEVGEDVTANLRTIIPLTLEVRGEVYMRTADFETLKFANPRNAAAGSLRQKDPTITAARPLRFFAYRDDLPYEADGVVIKIDDFAQQRELGVVGRDPRWAIAFKFPAREAITRLLDITVNVGRTGVVTPNALEPVQIGGVTVRNASLHNADYIIRIGDYVIVKRAGDVIPYVVGPPTHCPACHFVSRSALDIVGMGERQAELFIRDVADIFFLKRIANLLAAIDAARLDRLLVGLGIRYVGTVAAQTLVAALLEQIPGIGPVVAASIVDFFLRAAGGKTFVLTGTLREQASALIVAHGGKVTDSVSKKTSYVVAGANAGSKLAKALQLGIPVIDE
Chromobacterium_violaceum            LRELLNRYGHEYYVLDAPTVPDAEYDRLFRELQALEEAHPELAVSDSPTRRVGFVSVVHAVPMLSLSNAFEPKFDGLAISLLYENGLTRAATRGDGVAGEQVTENVRTIIPLKLEVRGEVLMLKRDFERLNFANPRNAAAGSLRQLDSRITAQRRLSFFAYRAGLPFEIDGVVYKVNRRDQQEALGFVSRAPRWAIAHKFPAEEALTCVEAIEEQVGRTGAITPVALKPVFVGGVTVTNATLHNEDEVVRVGDTVVVRRAGDVIPEVVSVPTACPVCHFAGRRMMDIDGLGERYIDKLVQGVADLYRLKWAENLIEAIDASRLARLLFALGIRHVGESTAKTLADWLFAALPDIGGVVADSLADFFLL?AEGKTLVLTGTLRDQAKALIEAAGGKVSGSVSKKTHYVVAGEEAGGKLAKAQELGVAILDE
Clostridium_perfringens              LVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKET?GYKLPYSPTQRVGFKKYTHKARLWSLDKAQTKKFDGLTINLSYDENLVTGATRGTGAIGEDVTAQVKTIIPLKIEIHGEAIMTTEAFEKYNLKNLRNGAAGALRNLNVAETAKRNLSAFFYRFDLNYDIDGLVIAIDDIRTRDLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTALEPVELAGVTVKRATLNNMDDIVRLGAEVFVRRSNDVIPEIMGVPKVCPACHFAGREAMNIAGFSEKTAEQLIRDISDLYKLKKAQNLLDAIEKSKLEAFLYSLGIPNVGVKTAKDLVKRFLVSVQDVGDIVARSIIEFFLLSLGGKTVVVTGTLRTSIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSE
Desulfovibrio_desulfuricans          LRTLLEYHGHRYYVMDEPEISDAEYDALFRELVRLEEEHPEHIHPGSPTHKVGLKPREHSLRMYSLDNAFDPKMDGLAMELVYENGFLLAVTRGDGSMGEDVTHTMRTVVRMRLEVRGEVIITRADFEALNFANPRNAAAGSVRQLDSSVAAARPLRFMAYRHELPFEIDGVVAKLNDLDLQEALGFTARAPRWAIALKFPAHQARTRLKDIRIQVGRTGVMTPVALEPVTVGGVTVSSATLHNEDEILMLGDVVIVQRAGDVIPEVVRAPAVCPVCHFVSKAGLDIDGVGRKWIEQLVVSPADLFRIKLASNFIEAFDSARLQRFICALGIRHVGEQTARTLAARFLQSLRDIGGEVAGSIRAFFFKNLGGKKILFTGSLRSEAKAMAEKAGAAVMSGVSARLDILVAGDKPGSKLEKARSLGITVLTE
Escherichia_coli                     LRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGFSQIRHEVPMLSLDNVFELKLDGLAVSILYENGLVSAATRGDGTTGEDITSNVRTIIPLKLEVRGEVFLPQAGFEKINFANPRNAAAGSLRQLDPRITAKRPLTFFCYRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVALEPVHVAGVLVSNATLHNADEILRIGDKVVIRRAGDVIPQVVNVPTYCPVCHFVSRRAMDVDGMGDKIIDQLVHTPADLFKLKSAQNVVNALEKAKFARFLYALGIREVGEATAAGLAAYFLQKVPDVGIVVASHVHNFFLLAEGGKTVVLTGSLRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDE
Exiguobacterium_sp                   LRQKLNQYSYEYYVQDQPTVPDSTYDQLLRELTELETAHPELITPDSPTQRVGFEKVTHDLPMLSLGNVFELKFDGLAISLKYEDGLVRGATRGDGTVGENITQNLRTILPLRLEVRGEAYMPKQSFERLNFANPRNAAAGSLRQLDSSITASRNLSLFVYRSNLPYEIDGIVLKVDRYDDQEELGFTAKSPRFATAYKFAAEEVMTTVEEVDFSVGRTGKVTPRAFAPVVVAGSTVSYATLHNADFIIRLHDQVIIKKAGDVIPAVVSVPAHCPACHFVSRQAMNIDGLGEKVVRQLIRTLADLYRLTSVDNLLTAIEASKLERLMFGLGIRLVGQKAAYLLAERFILAIDGIGSKIADSVTKYFLAELGGKTIVLTGTLRSEAGKRLELLGADVTGSVSKKTDILVAGEKAGSKLTKAESLGIEIWNE
Gemmata_obscuriglobus                LRKQLDHHNYLYYVEAAPVISDREFDTLLKELADIERANPGLVTPDSPTQRVGFKQVTHKTPMLSIDNSYELKIDGVSMSLTYENGLAFAATRGSGTVGDDVTHNIKTIIPLKLEVRGEVYMTRGELARINYKNARNLTAGTLKLKDPRECATRKLAFFAYRKELAYDTDGIVVKVNDWAQRERIGYTAKVPKWAKAYKFEAEQATTKLGKVVFYLGKFGELTPVADPPVQLAGTTVTHASMHNASWVVRIGDTVVVEKKGEIIPQVVDVPDKCPKCGFAKKTRMEIDGLGREVAVQLVKSVADLYRLKKAQNLLDGIAASKLARLLPGLTIYMVGEAMSDLLVEEFLARVKGFGPKRAQFVRAFFLKQFGGKTVVVTGTLRIGIEQAIKDAGAKASGSVSKKTDFVLVGDKPGSKADKAKELGVKIINE
Geobacter_sulfurreducens             LRTELERHNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLAAPDSPTQRVGFEQVTHRIPMLSLENAFEPKMDGLAVELVYERGLTVGSTRGDGVVGENVTHNLKTVIPLRLEVRGEVYLPLAAFQRLNFANPRNAAAGSIRQLDSRITARRPLAIFCYRDSLPYEIDGVVVKVDSFALQRELGEKSRSPRWAVAVKFPPRQAVTVVEDIVPSVGRTGVITPTALRPVEVSGVTVSRATLHNWEEMIRIGDTVVIERAGDVIPAVVKVPAVCPECHFASRDAMDMEGLGEKYIEQLVKNVADLYTLKLAENLLNAIEASKLSRFIFALGIRHVGEHTAKLLAGAFLLSIREVGPQVARSIITFFMFKAGGKTFVFTGALRPEAQKMVEKEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVRVLTE
Gloeobacter_violaceus                LRALLHRWGYAYYVLDAPEVSDAIYDQHYRELVDLESRYPELVSPDSPTRRVGFVSVTHRVPMFSLENAFELKIDGSATALSYEDGLVRGATRGDGVEGEEITQNLRTIIPLKLEVRGEAFIPRDEFERINFANPRNACAGTLRQLDSRVVASRRLGFFAYRHELPYDTDGVVVKVNAFDHQREVGFTSKFPRWAIAFKYPAEEKSTVVEAIAVQVGRTGALTPVALQPVAVAGTTVSRATLHNQDRIVRVGDTVIIRKAGEIIPEVVRVPQTCPECHWCA??ALEIDGIGDKLIARLVHTVADLYELRSAAKIVEQLDRSHWSRVLYGLGLRHIGASVSVELARAFIASLYGFGEELARSVVEWFLKAHGGLTFVITGTLREECTALIESHGGKVTSSVSSRTSYVVAGEKAGSKLARAQDLKVAVLDE
Helicobacter_hepaticus               QVQILKKMAYHYYVLDEPIATDEQYDSLYHQIVRFEEENPHLIDASSPTQRVGFSKNTHLERMWSLEDVFSPKFDGASLNLLYQEGLVSATTRGDGVIGELVTHNAKTIIPLEIEIRGEVVIAKEDFEYINFANPRNAAAGSLRQLDAKITAKRKLRFMPWRNNYPIMLDGMVIMLDKIASQQQLGWTIKSPRFACAYKFPAVEKSSKILSVSLQVGRTGIITPVALKPVEIEGAMISRATLHNFSEIIRLGDEVIIIRSGDVIPKIIKPPTHCPVCHFASKKALNIDGLGEKIVIQLVRNIKDIYALKRANNLIYAIQNTILWRFINALGIEHIGEGASKKLAQKFILSVDGFGEEMAYSLVEFNKVELLNKTIVLTGTLRDRIIKLLESKGAKISSSVSKKTDFVIYGEKAGSKLEKAQSLNITTLNE
Heliobacillus_mobilis                LREIIRHHEYRYYVLDAPEITDADYDALMRELQAIEDTYPELVEADSPTRRVGFNSVRHRVPLLSLANAFEPKIDGLTVVLTYEQGFVRGATRGDGETGEDITENLKTIIPLRLDVRGEAYLPKGAFATLNFANPRNAAAGSLRQLDPKVTASRPLRAFFYRHDLPFEIDGMVVKVNELDEYERLGVTSKSPRYAIAFKFPAEQAVTQVRSITVKVGRTGVITPTALEPVRVAGTTVSRATLHNEDIIIHVGDYVIIQKAGDIIPEVVSVPQACPECHYASRDAMNIEGLGPAIVNLLVHNPADLYDLKSAANLIAAIEQSKLAAFTFALGLRLVGQTAAKTLASHFLQAIPEIGPKMADSLKNYFLVEKGGKMIVLTGTLRREAQRLLEARGAKISSSVSKKTSMVIAGEEAGSKLEKALELKVPVLRE
Leptospira_interrogans               LSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEEEFPQFKDLASPTLVVGFEKFQHKLPVLSLINTYEWKIDGASIVLYYENGLKNGVTRGSGGIGDDVTDNIRTIIPLRLYLRGEVFMTFKDFEEFNYANPRNLSAGSIKQKNSSDTAKRPLRIFTYKDSLGFPTDGLVIKLNDISKRDALGYTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITPRAIEPISLAGTTVTFATLHNQDYIVGIGAIVRVAKRGEIIPAVEEVPDRCPSCFYCQRKQMDIEGLGDKQIEFLIKSIADLYDLKSVNIILKGIEQSKFRFLLPSLGLSELGHKVTELLIEHGLLEIPGIGPSTIQAFQENFLKKAGGQSWCVTGSFRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSVYDE
Magnetococcus_sp                     LRKRLNHYAHSYHTLDTSLVSDAEYDRLFRELQSLEAADPTLISADSPTHRVGFEKVRHRVAMLSLDNAFEPKLDGLAFSLTYAEGLVRAATRGDGQEGEDVTAHARTIVPLRLEVRGEVYMPLATFEKLNFANPRNAAAGSLRQLDPKITASRGLRMFCYRETLPYEIDGAVLKVDSQRLRERLGFVARAPRWAMAFKFPATEESTTVQAIDLQVGRTGVITPVALEPVAVGGVTVTNATLHNFLELVRVGDRVIVRRAGDVIPEVVRVPVACPVCHFASRKAMNIEGLGDKLVALLVERISDLYRLKSVANLLEAIEQSKAARFLFGLGIRDVGVTLAGSLAAHFLVGIEDVGEVVARRVVHFFLRALGGLSVVLTGTLREAAAVRLEGLGAKVVASVSGKTGCLVCGESAGSKLAKAQKAGVPVLDE
Magnetospirillum_magnetotacticum     LVEKLVSWDEAYHGQDAPLVPDDVYDGAKRRLSGIEARFPELAAKSPIKDKVGFGKLVHALPMLSLDNAFEPKIDGLSINLRYENGFVSAATRGDGAEGEDVTRNLDTFLPRRLEIRGEVYMTKADFLALNFANPRNAAAGSLRQLDPKITASRPLSLFAYRAALPYDIDGIVYKVDDLELQKRLGFVSRSPRWAIAHKFPAEQATTLLEAIDIQVGRTGALTPVALTPVNVGGVVVSNATLHNEDEIVRVGDTVIVQRAGDVIPQIVGVPDTCPVCHFVSRNAFDIEGLGDKNIEFLVRKPAHIFTLRSTEKLFESIRSRALERFIFALGIRQIGEATAKRLARHYLTSIEDIGPSVAADLLDFFLVRAMGKAVVFTGTLRPEAKARAEALGAKVVGSVSKKTDYVVVGADAGSKATEAAKLGLTILSE
Microbulbifer_degradans              LKNQINYHNKLYYVLDAPELPDAEYDKLFQELQAIEQQFPELVTEDSPTQRVGFASIEHKRPMLSLDNVFEPKFDGIAASLLYENGLKTAATRGDGTVGEDITQNMRTIVPLKLEVRGEVYMPKAGFLRINFVNPRNAAAGSLRQLNPQITAKRPLVFCAYRESLAYDIDGIVFKVNAFDLQERLGFVSRAPRWAIAHKFPAQEALTVLHDVEFQVGRTGAITPVALQPIFVGGVTVSNATLHNKDEIIRVGDTVIVRRAGDVIPQIVSIPTACPVCHFASRQAMDIDGLGDKIVDQLVNDVADLYTLKSAANLVAAIEASKLDKILYALGIREVGRATARNLANHFLIEVTDVGPVVAHYVVDFFLIAAGGTTYVLTGSLRDEAKDKLQALGAKVSGSVSAKTTCVVAGPGAGSKLAKAEKLGLAILDE
Parachlamydia_sp                     LCHEIWHHNKLYYIEHQPIISDEEFDALLKKLEEIERSHPEWITEFSPSQRVNFKTVAHRTPMLSLANTYELKMDGIAITAIYEQGFKRGITRGNGKRGDDITTNMRMILPLQLEIRGEVFMPRQVFLQLNWANPRNAAAGSLKLLDPKMVAERRLAVVFYRTILPYDIDGIVIKLNDFKDQKRLGVTGKSPRWAIAYKFAAEQAKTRIIDITVQIGRTGVLTPVALEPIFLSGSTIARASLYNQEEVIRIGDLVTIEKGGDVIPKVLNVPLYCPSCYFVGKQAMDIKHMGEKIVIQLIHLPSDIFALKAIQNLMRSIEESKLERFIMALEIKYIGIGTAELLAARALIKIEGVGGKVAQAVVEHFLLELGGKIFVLTGSLRQSAASLIKERGGKVSDSVSRKTNYVVAGAEPGSKLDKARTLGIPVLNE
Pediococcus_pentosaceus              LREILDRWSKLYYTKDAPEVEDYEYDEKYADLVALEEAFPEIITQDSITQRVGFTKVTHTEPMLSMGDVFELKIDGLAISLIYQDGLIQGSTRGDGNIGEDITKNLKTIVPQKLEVRGECFMPKASFAKLNFANPRNAAAGSLRQLNTNVTKKRDLDTFIYREDLPYGIDGIVLKVNDLSLQQELGHTVKIPRWEIAYKFPPEEAATVVRDIEWTVGRTGVVTPTAMDPVQLAGTTVSRATLNNVDQLVHIGDTVLLHKAGDIIPEITRVPTHCPSCHFGSRNAMNIMGLGPKQIQQLIHHFDDLYKLKRVNNLLEAIDNSRLERLINGLGIQGVGTKMARTLAEKFFDAVDTIGETLANNLATFFLKAVGGKKVVLTGKLRNELKERLISLGADVAGSVSKKTDILIAGADAGSKLTKAQALGIEILDE
Pirellula_sp                         LVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENDHPDLRRPDSPTQLVGLVQVPHRVPMLSIDNTYEYKIDGVAGSIRYENGLTLALTRGNGQVGDDITHNVRTILPRSIEVRGELYMTDADLADLNFKNTRNVTAGTIRLLDPKIAASRNIRFFCHMPDLPFEIDGIVFKVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVALTPVDIADTTVSRASLHNADEIVRVGDTVVVEKAGKIIPKVVRVPTHCPQCYFGSRTGMDIDGLGEEVVDLLVENYADLYRLKNAESLVAGINESRLARVLSSISIRHIGPRVAKLITAKFLAAIHEIGDRIAESLVKFILDAVGGKNIVATGTLRDEIKARIEELGGRAASSVSKKTDFLIAGEKAGSKLTKAESLGVEVLSE
Porphyromonas_gingivalis             LRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEWDSPDSPTHRVGFASVRHDRPMLSLSNTYELKFDGLSISLIYEDGLVRAVTRGDGIMGDDVTANVRTIVPLRLEVRGEILLPFKEFDRINFANPRNAASGTIKQLDPHIVAGRNLDAYFYRLTLPVATDGIVLKVNAPAQQDLLGFTAKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVALDPVLISGTVVRRASLHNADFILHEGDFVYVEKGGEIIPKIVGVTVLCPDCHYCGRKTADIN?IGPETIELLIRNVADFYALRAAAKLLDSIEASKYQAILFGLGIRFVGETVAKKLAAVYLVQIDEIGERIAAAVLHFFLRLAGGKTVVISGTFRDEYKAMVEDNGGRMAGSVSSKTSFILAGSDMGSKREKAEKLGVRLMSE
Propionibacterium_acnes              LAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQRVGFAPVKHLERLLSLDNVFELKIDGLAVDLVYRDGLVSGATRGDGRIGEDVTANVRTIIPRKLEVRGEVFFPVADFTDLNFANPRNAAAGSLRQKDSRVTASRPLSMIVHRDEASHQIDGVVVKVDDVSLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGMRPVTVAGSTVEMATLHNAFEVVLIGDTVVLRKAGDVIPEILGPPDHCPSCGLASRGALDIEALGWEAAIALLSSEAGLFDLATTKKMFDELAKAKLWRVLVALSIRHVGPTAARALATHFLAGVDGVGEIIAESVKRWFWAAAGGLTVVVTGSLRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGSKETKARDLGRPILDE
Rhodobacter_capsulatus               LVARIEAANHAYHTLDAPKISDADYDALKRRLAAIEARFPDLARADSPTMRVGFGKVAHEIRMLSLENAFEPKIDGLSLSLRYEDGLVQAATRGDGEVGENVTENARTIIPQRLEVRGEVYMSHADFAALNFANPRNAAAGSVRQLDARITASRPLKFFAYRATLGYDIDGVVYKVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVALAPVTVGGVVVSNATLHNEDYIIREGDWVQVYRAGDVIPKVADVPHLCPECHFVSRAAFDIEGLGAKQVEAFIREPAEIFTLKSAQNLFQAIEEKRLARLIFALGIRHVGESSAALFATHYLLSIDGVGETLAASVTAAFLVTHLGLTVVFTGTLRAEAKARAEALGAKVAGSVSAKTDILVAGPGAGSKAKKAADLGVRVIDE
Rhodothermus_marinus                 LREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELVTPDSPTQRVGFEKVRHPEPLLSLNNAFELKIDGLAMALTYENGLSVGATRGDGIEGENVTQNVRTIIPLRIEVRGEVYMRKRDFERLNFANPRNAAAGSVRQLNPQVTALRPLSFFAYRDELDYEIDGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAREAITRLLDIMVSVGRTGVVKPVALEPVEVGGVTVSQATLHNEDYVIRIGDLVVVIRAGDVIPQVVRPPERCPSCHFAGRDAMDIEGMGSQVARQLVRPLSDLYRLTRARNLLRAIEASKLSRLLFGLGIRHVGKTTAELLVQRFLAALEGVGPITAESIANWFLKELGGKTFVLTGALRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDE
Streptococcus_mutans                 LVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILPNSPTHRVGFEKYRHEYPLFSLQDAFELKIDGLSISLTYVNGLRVGATRGDGTVGENITENLKRVIPLHLTVRGECYLPKASFKTINFANPRNAAAGTLRQLDTKVVAKRKLATFIYRAELAYDIDGVVIKVNSLALQEALGFTVKAPRWAIAYKFPAEEKTAEILSVDWTVGRTGVVTPTALTPVQLAGTTVSRATLHNVDYIIRIGDIVVVYKAGDIIPAVLHVPTVCPSCHFASRDAMNIIGLGPAIVEKLICDVADIYQLKSATKLYKAIQASKAEKLLFGLGIRHVGSKASRLLMERFIAAIDGLGIVIAESLKTYFLKTAGGMTIVLTGKLRSQAKEKLQSLGANVAGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDE
Synechocystis_sp                     LRQQLQKASYAYYVLDAPVMEDSVYDQLYRELQRLEAENPELITPDSPTQRVGFRSVAHNIPLYSLENAFELKIDGSAIALTYENGLVRGVTRGDGTTGEEISQNIKTIIPVKLEVRGEAFLPLEEFNRINFANPRNAAAGTLRQLDPKIVHQRRLQFFAYRQRLPYMTDGVVVKINQYPLQRELGFTQKFPRWAIALKYPAEETPTVVKAIEVNVGRTGAVTPLAMEPVQLAGTTVQRATLHNQDRIIRVGDTVIIRKAGEIIPEVVRVPSHCPACHWASRNALDIQGLGEKVVITLVNSVADLYGLKSAEKLIAAIEVSKWSRILFGLGIRHVGQVNAKLLSQQFLEGVYGIGPEIAEAVVNWFLEELGGKTFVLTGTLRLEAQELIEQSGGKVTSSVSTKTDYVLLGDKPGSKAAKAESLGIKLLSE
Thermoanaerobacter_tengcongensis     LREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSPSQRVGFEPFTHIVPMLSLANAFEPKIDGLSVELVYENGFTVGSTRGDGIVGENVTPNLKTIIPLRLVVRGEVFMPKASFAKLNFANPRNAAAGSVRQLDPKVTAKRDLDIFIFKDSLPYDIDGAVIKVNELDKREILGQTAKDYRWAIAFKYPAEMKKTKIVDIVVQVGRTGALTPTALEPVVISGSVVSRATLHNEDYIIRIGDTVLVHKAGGIIPEVVEVPDKCPECHFASKDAMDIEGLGPAIISQLIQNVADLYYLKSARNLLEAIEKSKLDRLLFGLGINLIGSKAAQVIAEHFFLELPDIGPKMARSIVTFFLKEAGGKIFVLTGALRDEAARLIVERGGKVTNSVSKKTDYLIVGADPGSKLKKAQELGVKIINE
Thermobifida_fusca                   LSQDLDDYSYRYYL?GSPIISDAEYDQLMAELRDLEAQYPSLVTPDSPTQKVGFAPVEHLERMQSLDNAFELKIDGLAVALVYEKGLVRAATRGDGRIGEDITLNIRTIVPLRLEVRGEVFLPVKAFEQLNFANPRNAAAGSLRQKDPRVTASRPLSMLVHRHDPEYEIDGVVVKVDDVSLQRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIKTSVGRTGRVTPYALEPVKVAGSEVEFATLHNAQEVVLIGDTVVVRKAGDIIPEVVGPPTECPECFIAGRKALDIEALGYVAATALLRDEGDLFSLKIVEKLFQQLEEAKLWRVLVALSIRHVGPRAAEDLARHFLEAVEGIGPTIARSIVDWFWRAAGGITTVITGTLRDGAKEAVQKLGGRVTGSVSRKTDFVVVGANPGSKYDKAVKLGVPILDE
Thermosynechococcus_elongatus        LRRLLQRASYAYYALDQPIMEDEVYDQLYRELQELEAAYPEYITPDSPTQRIGFESVSHRIPLYSLENAFELKMDGVALALTYENGLVRGATRGDGQRGEDVTSNVRTIIPLRLEVRGEAFLPLERFHQLNFANPRNAAAGTLRQLDPRIVAQRQLDFFAYRHQLPYLTDGIVVKLNDLKLQQTLGFTQKFPRGSIAWKYEPEQAITDVLAITVQVGRTGALTPVALAPVQLAGTTVSRATLHNADYILHIGDKVVIHKAGEIIPEIVRVPTACPECHWASRDALDIQGLGEKLVQQLVRTPADLYRLKSADKLLVAIANSKWPRVLYGLGIRHVGSVNAQLLADRFLCGVDGIGEEIAQAVQEWFLQALGGKRFVITGTLREQAKALIQKHGGHVSESVSRQTDYLVVGEKAGSKLRRAQELGIPCINE
Thermotoga_maritima                  LREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELVTPDSPTQRVGFKTVKHSVPMLSLDNTYELKIDGVSIALRYENGFVLGATRGDGIEGEDVSENVKTVIPLRLEVRGEIYMPVDEFKRLNFANPRNAAAGTLRQLNTALVAARRLDSFIYKRELDYWVDGVVVKVNRFDFQRILGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVALEPVQLAGTIVKRASLHNFEYIIRIGDYVFVEKAGGIIPQIVKSPDKCPVCTLVSREALDIEGLGEKLIDRLIKDIADIFYLRTIAKILQEIEEAKLHKLITGLGIPMVGQKTAKILAEHFLKDIPGIGPEIAKSIVEYFLKKAGGLTFAVTGTLREEIIEFLEKLGAKVVNSVSRNTDYLIVGENPGSKYERAKMLKVKMMSE
Thermus_thermophilus                 LRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELKSPDSPTLQVGFRPVRHPTRMYSLDNAFEHKVDGLSVNLYYEEGLVYGATRGDGEVGEEVTQNLLTIIPRRLEVRGEVYMPIEAFLRLNFKNPRNAAAGSLRQKDPRITAKRGLRATFYRRALPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGLEPVFLEGSEVSRVTLHNESYIIRIGDWVLVHKAGGVIPEVLRVPETCPECHFASRKAMDIQGLGEKLIERLVKDVADLYRLKSAQNLLRQIEESKLERLLYALGLPGVGEVLARNLAARFLLEVEEVGELTARAILETLLKEAGGLTFVITGELREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTE
;
END;

[ The following blocks are output data for analysis step 2811 ]
BEGIN TREES;
      TITLE Tb7585;
      LINK TAXA = TaxaForAnalysisStep2811;
      TREE DLIG_mbpostcons = [&R] (Streptococcus_mutans,(((Clostridium_perfringens,(Campylobacter_jejuni,Helicobacter_hepaticus)),((Exiguobacterium_sp,Bacillus_subtilis),(Heliobacillus_mobilis,((((Magnetococcus_sp,((Magnetospirillum_magnetotacticum,(Rhodobacter_capsulatus,Agrobacterium_tumefaciens)),((Chromobacterium_violaceum,Burkholderia_cepaciar),((Escherichia_coli,Buchnera_aphidicola),Microbulbifer_degradans)))),(Geobacter_sulfurreducens,(Desulfovibrio_desulfuricans,Bdellovibrio_bacteriovorus))),(Rhodothermus_marinus,((Thermobifida_fusca,(Propionibacterium_acnes,Bifidobacterium_longum)),Chloroflexus_aurantiacus))),((((Porphyromonas_gingivalis,(Leptospira_interrogans,Borrelia_burgdorfer)),((Pirellula_sp,Gemmata_obscuriglobus),(Chlorobium_tepidum,(Chlamydophila_pneumoniae,Parachlamydia_sp)))),(Gloeobacter_violaceus,(Synechocystis_sp,Thermosynechococcus_elongatus))),(Thermotoga_maritima,((Aquifex_aeolicus,Thermus_thermophilus),Thermoanaerobacter_tengcongensis))))))),Pediococcus_pentosaceus));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2327]


END;