#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 06, 2026; 7:43 GMT

TreeBASE (cc) 1994-2008

Study reference:
Robin M., Ye W., Kanzaki N., Williams D., Morris K., & Thomas W. 2006. Stomatal Ultrastructure,
Molecular Phylogeny and Description of Parasitodiplogaster laevigata
n. sp. (Nematoda: Diplogastridae), a Parasite of Fig Wasps from Ficus laevigata
from Florida. Journal of Nematology, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1484]

[ The following blocks are input data for analysis step 2883 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2883;
        DIMENSIONS NTAX=9;
        TAXLABELS
            Koerneria_sp._ex_Andrena_allegheniensis_New_York_228
            Parasitodiplogaster_citrinema_ex_Ficus_citrifolia_Panama_235
            Parasitodiplogaster_laevigata_Ficus_laevigata_Florida_237
            Parasitodiplogaster_laevigata_Ficus_laevigata_Florida_245
            Parasitodiplogaster_laevigata_Ficus_laevigata_Florida_363
            Parasitodiplogaster_maxinema_ex_Ficus_maxima_Panama_236
            Parasitodiplogaster_popenema_ex_Ficus_popenoei_Panama_252
            Parasitodiplogaster_sp_ex_Ficus_turbinata_Panama_239
            Parasitodiplogaster_trigonema_ex_Ficus_trigonata_Panama_240
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1064]

	TITLE Parasitodiplogaster_D2D3;
	LINK TAXA = TaxaForAnalysisStep2883;
	DIMENSIONS NCHAR=750;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=- GAP= #;

MATRIX
[                                                                        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750]
[                                                                         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
Koerneria_sp._ex_Andrena_allegheniensis_New_York_228             GAAGAGAGAGTTCAAGAGGACGTGAAATCACTGGGGGAGAAGCGGATAGAGTCGACGAAATCGGCGGTATTCAGGGCTGTGCGGTCGTCTGGCTACGT-------GTGGCACCCCTGTTAGGGGGTGTGCATGTGGTTGTG-ATGGCCGTGCGACCTGCACTTGCCGTCGGTATGTGCCGAGAGGCTTGGTTGCCCCTTCTGAACGGCGTGGCGTTGCCC--AGCTTCGGC--TGGTGTCTTGTCGCGTCGGGAAGTCGGTGGTGGCTAAGTTTCCGCATAGAGCGTCTAGCGCTTGCGCGCTGCTCAGGTTGGCTTGCTGCGTACGTAGGCGGTCGCGTGCGACTTGTTTGCGTG--CGTTGTAGGTTG-GCAGGGGTGGTGCCTAGAC--GTCGTCTCGGTATGAAA-GTCGATCACCTATCCGACCCGTCTTGAAACACGGACCAAGAAGTCTAGCATATGCGCGAGTCATTGGGTGCAAAAACCTAAAGGCGTAATGAAAGTGAAGGCTGGCTT-GACCGGCTGATATGGGATCCGTGCTCGTTCGCGAGTGCGGCGCACCATAGCCCCATCCTGAGTGCTTGCACTGGGGTGGAGGTAGAGCGTATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATC
Parasitodiplogaster_citrinema_ex_Ficus_citrifolia_Panama_235     GAAGAGAGAGTTAAACAGGACGTGAAACCACTAGGGACGAAGCGGATGGAGTTGACGAAATTACCAGTATTCAGGTGTGTGCGGTCGCCGGGTGGCGCT-GTTCTGCGATGTGCATT----TTCGTGGCGGCGTTGTCTTGCGTGGCTGTGCGCTCTGCATTTGCTGTTAGTATGTGCCGAGGGGCCTGTTTGCCTCCTCTGACCTGCTGGGTGTTGCCCCTCGCTTCGGCGTCGGTGTCTTGCCCGGTGGCGATGTTGATGGCGGATAGGTTGCGC-CTTTGGCGGCTGGCCTTCGTGCGTTGCGTGTTGCGGTGTGCGTTGTGTGCGAGCGGTGGCGTGCCACTTGTTTGTATTG-CAGCGTGTATCGTG-GCGTGCGGCGCCTCAGT-CGCTCTCTCGGTATGAAAAGTCGACCACCCATCCGACCCGTCTTGAAACACGGACCAAGAAGTCTAGCATGTGCGCGAGTCATTGGGTGTTGAAACCTAAAGGCGTAATGAAAGTGAAGGTCGCTTT-GTGCGGCTGATATGGGAGTCGTGTTCGTGCGCGTTCGCGATGCACCATAGCCCCATCCCGTGAGCTTGCTCTGGGGTGGAGGTAGAGCGTACATGCTGGGACCCGAAAGATGGTGAACTATGCCCGAGCAGGATGAAGTCAGAGGAAACTCTGATGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATC
Parasitodiplogaster_laevigata_Ficus_laevigata_Florida_237        GAAGAGAGAGTTAAACAGGACGTGAAACCACTAGGGACGAAGCGGATGGAGTTGACGAAATTAACAGTATTCAGGTGTGTGCGGTCGCCTGGCGGTGTTTGTTCTGCGATG-GTAT-----GTCGTGGCGGCGCTGTCTAGTGTGGCTGTGCGCTCTGCATTTGCTGTTCGTATGTGCCGAAAGGCCTGTTTGCCTCTTCCGAACCACTGCGTGTTGCCCTTCGCTTCGGCGTCGGTGTCTTGCGTGGTGGGGCTGTTGATGGTGGATAGGTTGCGC-ATTTGGCGACTGGCCTTCGTGCGTTGTGCGTTGCGGTGTGCGTTGTGTGCGGGCGGTGGCGTGCCACTTGTCTGTAATGTCAGCGTATATCGTATGCGTACTGCGCCTCAGTT-GCTCTTTCGGTATGAAAAGTCAGCCACCCACCCGACCCGTCTTGAAACACGGACCAAGAAGTCTAGCATGTGCGCGAGTCATTGGGTGTGAAAACCTAAAGGCGAAATGAAAGTGAAGGTCGTTTT-GTGCGGCTGATATGGGAGTCGTGTTCGTGCGCGTTCGCGATGCACCATAGCCCCATCCCGCGAGCTTGCTCTGGGGTGGAGGTAGAGCGTACATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGTCAGAGGAAACTCTGATGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATC
Parasitodiplogaster_laevigata_Ficus_laevigata_Florida_245        GAAGAGAGAGTTAAACAGGACGTGAAACCACTAGGGACGAAGCGGATGGAGTTGACGAAATTAACAGTATTCAGGTGTGTGCGGTCGCCTGGCGGTGTTTGTTCTGCGATG-GTAT-----GTCGTGGCGGCGCTGTCTAGTGTGGCTGTGCGCTCTGCATTTGCTGTTCGTATGTGCCGAAAGGCCTGTTTGCCTCTTCCGAACCACTGCGTGTTGCCCTTCGCTTCGGCGTCGGTGTCTTGCGTGGTGGGGCTGTTGATGGTGGATAGGTTGCGC-ATTTGGCGACTGGCCTTCGTGCGTTGTGCGTTGCGGTGTGCGTTGTGTGCGGGCGGTGGCGTGCCACTTGTCTGTAATGTCAGCGTATATCGTATGCGTACTGCGCCTCAGTT-GCTCTTTCGGTATGAAAAGTCAGCCACCCACCCGACCCGTCTTGAAACACGGACCAAGAAGTCTAGCATGTGCGCGAGTCATTGGGTGTGAAAACCTAAAGGCGAAATGAAAGTGAAGGTCGTTTT-GTGCGGCTGATATGGGAGTCGTGTTCGTGCGCGTTCGCGATGCACCATAGCCCCATCCCGCGAGCTTGCTCTGGGGTGGAGGTAGAGCGTACATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGTCAGAGGAAACTCTGATGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATC
Parasitodiplogaster_laevigata_Ficus_laevigata_Florida_363        GAAGAGAGAGTTAAACAGGACGTGAAACCACTAGGGACGAAGCGGATGGAGTTGACGAAATTAACAGTATTCAGGTGTGTGCGGTCGCCTGGCGGTGTTTGTTCTGCGATG-GTAT-----GTCGTGGCGGCGCTGTCTAGTGTGGCTGTGCGCTCTGCATTTGCTGTTCGTATGTGCCGAAAGGCCTGTTTGCCTCTTCCGAACCACTGCGTGTTGCCCTTCGCTTCGGCGTCGGTGTCTTGCGTGGTGGGGCTGTTGATGGTGGATAGGTTGCGC-ATTTGGCGACTGGCCTTCGTGCGTTGTGCGTTGCGGTGTGCGTTGTGTGCGGGCGGTGGCGTGCCACTTGTCTGTAATGTCAGCGTATATCGTATGCGTACTGCGCCTCAGTT-GCTCTTTCGGTATGAAAAGTCAGCCACCCACCCGACCCGTCTTGAAACACGGACCAAGAAGTCTAGCATGTGCGCGAGTCATTGGGTGTGAAAACCTAAAGGCGAAATGAAAGTGAAGGTCGTTTT-GTGCGGCTGATATGGGAGTCGTGTTCGTGCGCGTTCGCGATGCACCATAGCCCCATCCCGCGAGCTTGCTCTGGGGTGGAGGTAGAGCGTACATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGTCAGAGGAAACTCTGATGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATC
Parasitodiplogaster_maxinema_ex_Ficus_maxima_Panama_236          GAAGAGAGAGTTAAACAGGACGTGAAACCACTAGGGACGAAGCGGATG-AACCGACGAAACTCGCGGTATTCAGGTGTGCGCGGCCGTGCGGCGGTGCTTGCTC-GCGGCCGGTGTT----GTCGTGGCGGCGTCGTTGTGCGCGGTTGTGTGCTCTGCAATTGCTGCGGGTATGCGTTGAGAGGCCTGCGCGCCTCCTCCTAACCGTTGTGTGTTGCCCTTGCTTGCAA----GGTGTCTTGCGCGGCGGGGCTGTCGATGGCGCGTAGGTTGTTGCCTTCAGCGGCTGACGATTGCGCGGTGCGCGTCGCGGCGTGCGTTGTGCGTGAGCAGTGGCGTGCCACTCGTTTGCGTCTTCAGCGTGCGTTGTGTGCGCGCGTCGCTACAGCTCGCTGTCTCGGCGTTAAA-GTTGGTCACTCATCCGACCCGTCTTGAAACACGGACCAAGAAGTCTAGCATGTGCGCGAGTCATTGGGCGTAAAAACCTAAAGGCGAAATGAAAGTAAAGGCCGCCTTGGTGCGGCTGATATGGGAGTCGTGTTCGTGCGCGTTCGCGATGCACCATAGCCCCATCCCGTGAGCTTGCTCTGGGGTGGAGGAAGAGCGTACATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGTCAGAGGAAACTCTGATGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATC
Parasitodiplogaster_popenema_ex_Ficus_popenoei_Panama_252        GAAGAGAGAGTAATACAGGACGTGAAACCACTAGGGACGAAGCGGATGGAGTTGACGAAATTAATAGTATTCAGGTGTGTGCGGTCGCCTGGCGGCGTTTGTTCTGCGATG-GCCTA----ATCGTGGCGGCGTTGTCTAGTGTGGTTGTGCGCTCTGCATTTGCTGTTAGTATGTGCCGAGGGGCCTGTTTGCCTCTTCCTAACTGCTGCGTGTTGCCCTTCACTTCGGTGTCGGTGTCTTGCGTGGTGGGGATGTTGATGGTGGATAGGTTACGC-CTTTGGCGGCTGGCTTGCGTGTGTTGTGTGTTGCGGTGTGCGTTGTGTGCGGGCGGTGGCGTGCCACTTGTTCGTAATGTCAGCGTGTATTGTG-ATGTGCGGTGCCTCAGT-CGCTCTCTCGGTATGAAAAGTCGACCACCCATCCGACCCGTCTTGAAACACGGACCAAGAAGTCTAGCATGTACGCGAGTCATTGGGTGTTGAAACCTAAAGGCGTAATGAAAGTGAAGGTCGCTTT-GTGCGGCTGATATGGGAGTCGTGTTCGTGCGCGTTCGCGATGCACCATAGCCCCATCCCGTGAGCTTGCTCTGGGGTGGAGGTAGAGCGTACATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGTCAGAGGAAACTCTGATGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATC
Parasitodiplogaster_sp_ex_Ficus_turbinata_Panama_239             GAAGAGAGAGTTAAACAGGACGTGAAACCACTAGGGACGAAGCGGATGGAGTTGACGAAATTAACAGTATTCAGGTGTGTGCGGTCGCCTGGCGGCGTTTGTTCTGCGATG-GCAT-----GTCGTGGCGGCGTTGTCTAGTGTGGCTGTGTGCTCTGCATTTGCTGTTGGTATGTGCCGAAAGGCCTGTTTGCCTCTTCCGAACCACTACGTGTTGCCCTTCGCTTCGGCGTCGGTGTCTTGCGTGGTGGGGCTGTTGATGGTGGATAGGTTGCGC-ATTTGGCGACTGGCTTTCGTGCGTTGTGCGTTGCGGTGTGCGTTGTGTGCGGGCGGTGGCGTGCCACTTGTCCGTAATGTCGGCGTATATCGTATGCGTACTGCGCCTCAGTT-GCTCTTTCGGTATGAAAAGTCAGCCACCCATCCGACCCGTCTTGAAACACGGACCAAGAAGTCTAGCATGTGCGCGAGTCATTGGGTGTGAAAACCTAAAGGCGAAATGAAAGTGAAGGTCGCTTT--TGCGGCTGATATGGGAGTCGTGTTCGTGCGCGTTCGCGATGCACCATAGCCCCATCCCGTGAGCTTGCTCTGGGGTGGAGGTAGAACCTACATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGTCAGAGGAAACTCTGATGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATC
Parasitodiplogaster_trigonema_ex_Ficus_trigonata_Panama_240      GAAGAGAGAGTTAAACAGGACGTGAAACCACTAGGGACGAAGCGGATGGAGTTGACGAAATTAACAGTATTCAGGTGTGTGCGGTCGCCTGGCGGCGTGTGTTCTGCGATG-GCAT-----GTCGTGGCGGCGTTGTTTAGTGTGGCTGTGCGCTCTGCATTTGCTGTTGGTATGTGCCGAAAGGCCTGTTTGCCTCTTCCGAACCACCGCGTGTTGCCCTTCGCTTCGGCGTCGGTGTCTTGCGTGGTGGGGATGTTGATGGTGGATAGGTTGCGC-ATTTGGCGACTGGCCTTCGTGCGTTGTGCGTTGCGGTGTGCGTTGTGTGCGGGCGGTGGCGTGCCACTTGTTCGTAATTTCAGCGTATATCGTATGCGTACTGCGCCTCAGTT-GCTCTTTCGGTATGAAAAGTCAGCCACCCATCCGACCCGTCTTGAAACACGGACCAAGAAGTCTAGCATGTGCGCGAGTCATTGGGTGTGAAAACCTAAAGGCGTAATGAAAGTGAAGGCTGCTTG----CGGCTGATATGGGAGTCGTGTTCGTGCGCGTTCGCGATGCACCATAGCCCCATCCCGTGAGCTTGCTCTGGGGTGGAGGTAGAGCGTACATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGTCAGAGGAAACTCTGATGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATC
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = Parasitodiplogaster_D2D3) = 
		N: 1-750;
CODONPOSSET  CodonPositions (CHARACTERS = Parasitodiplogaster_D2D3) = 
		N: 1-750;
END;
[ The following blocks are output data for analysis step 2883 ]
BEGIN TREES;
      TITLE Tb7656;
      LINK TAXA = TaxaForAnalysisStep2883;
      TREE Fig._14 = [&R] (((((((Parasitodiplogaster_laevigata_Ficus_laevigata_Florida_363,Parasitodiplogaster_laevigata_Ficus_laevigata_Florida_245,Parasitodiplogaster_laevigata_Ficus_laevigata_Florida_237),Parasitodiplogaster_sp_ex_Ficus_turbinata_Panama_239),Parasitodiplogaster_trigonema_ex_Ficus_trigonata_Panama_240),Parasitodiplogaster_popenema_ex_Ficus_popenoei_Panama_252),Parasitodiplogaster_citrinema_ex_Ficus_citrifolia_Panama_235),Parasitodiplogaster_maxinema_ex_Ficus_maxima_Panama_236),Koerneria_sp._ex_Andrena_allegheniensis_New_York_228);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr901]


END;