#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 10, 2026; 13:56 GMT TreeBASE (cc) 1994-2008 Study reference: Shun L., Yuan C.Y., Fei S.Y., Lan H.X., Ge S.C., Jing S., Mei L.D., Genevieve G., & Kai C.B. 2021. Systematic classification and phylogenetic relationships of the brown-rot fungi within the Polyporales with an emphasis on the antrodia clade. Fungal Diversity, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S28494] [ The following blocks are input data for analysis step 29217 ] BEGIN TAXA; TITLE TaxaForAnalysisStep29217; DIMENSIONS NTAX=414; TAXLABELS 'Abortiporus biennis FD_319' 'Adustoporia sinuosa Cui_16253' 'Adustoporia sinuosa Cui_16484' 'Adustoporia sinuosa Cui_9654' 'Adustoporia sinuosa JV_050917' 'Amaropostia hainanensis Cui_13739' 'Amaropostia hainanensis Cui_5367' 'Amaropostia stiptica Cui_10043' 'Amaropostia stiptica Cui_10981' 'Amylocystis lapponica HHB_13400' 'Amylocystis lapponica OKM_4418' 'Amyloporia alpina FP_105523' 'Amyloporia alpina RLG_6107' 'Amyloporia nivea Cui_16478' 'Amyloporia nivea Cui_16479' 'Amyloporia nivea Cui_16480' 'Amyloporia subxantha Cui_10572' 'Amyloporia subxantha Cui_17174' 'Amyloporia xantha Cui_11544' 'Amyloporia xantha Cui_11677' 'Anthoporia albobrunnea FP_100514' 'Anthoporia albobrunnea S_4665' 'Antrodia favescens FP_103723' 'Antrodia favescens JV_04124_J' 'Antrodia heteromorpha Dai_12755' 'Antrodia heteromorpha Kosolapov_VIII_2003' 'Antrodia serpens Dai_14850' 'Antrodia serpens Dai_7465' 'Antrodia subheteromorpha Cui_18416' 'Antrodia subheteromorpha Cui_9617' 'Antrodia subserpens Cui_8310' 'Antrodia subserpens Dai_13233' 'Antrodia tanakae Cui_9743' 'Antrodia tanakae Yuan_1106' 'Antrodiella stipitata FD_136' 'Antrodiella stipitata Yuan_5640' 'Atraporiella yunnanensis CLZhao_603' 'Atraporiella yunnanensis CLZhao_605' 'Aurantiporus albidus CIEFAP_117' 'Aurantiporus croceus Miettinen_16483' 'Aurantipostia macrospora Cui_16604' 'Aurantipostia macrospora Cui_16634' 'Aurantipostia macrospora Cui_16671' 'Auriporia aurea Cui_10665' 'Auriporia aurea FP_98524' 'Auriporia aurea PRM_915966' 'Auriporia aurulenta Cui_2545' 'Auriporia aurulenta Dai_6922' 'Auriporia aurulenta HHB_8864' 'Auriporia aurulenta PRM_915967' 'Austroporia stratosa Cui_16612' 'Austroporia stratosa Cui_16613' 'Austroporia stratosa Cui_16618' 'Austroporia stratosa Cui_16619' 'Austroporia stratosa FF_263' 'Austroporia stratosa FF_461' 'Austropostia hirsuta Cui_16660' 'Austropostia hirsuta Cui_16661' 'Austropostia hirsuta Cui_16662' 'Austropostia pelliculosa MR_10592' 'Austropostia pelliculosa MR_10671' 'Austropostia plumbea Cui_16550' 'Austropostia plumbea Cui_16639' 'Austropostia punctata MR_11100' 'Austropostia punctata MR_12398' 'Austropostia sp Dai_18591A' 'Austropostia subpunctata Cui_16675' 'Austropostia subpunctata Cui_16685' 'Austropostia subpunctata Cui_16686' 'Bjerkandera adusta HHB_12826' 'Bjerkandera aff centroamericana_L_13104' 'Bondarzewia podocarpi Cui_6380' 'Brunneoporus malicolus Cui_9491' 'Brunneoporus malicolus Miettinen_10595' 'Brunneoporus tuvensis Kotiranta_267351' 'Brunneoporus tuvensis Kotiranta_267352' 'Buglossoporus eucalypticola Dai_13660' 'Buglossoporus eucalypticola Dai_13660A' 'Buglossoporus quercinus JV_090615_J' 'Buglossoporus quercinus JV_14061' 'Byssomerulius corium FP_102382' 'Calcipostia guttulata Cui_10018' 'Calcipostia guttulata Cui_10028' 'Cartilosoma ramentacea Dai_6082' 'Cartilosoma ramentacea PK_7419' 'Cerarioporia cystidiata Dai_16122' 'Cerarioporia cystidiata Dai_9848' 'Ceriporia lacerata FP_55521_T' 'Ceriporiopsis gilvescens Dai_12694' 'Ceriporiopsis gilvescens Yuan_2654' 'Cerrena unicolor FD_299' 'Cerrena zonata CLZhao_1110' 'Climacocystis borealis Dai_4014' 'Climacocystis montana Cui_17502' 'Climacocystis montana Cui_9607' 'Crustoderma dryinum FP_105487' 'Crustoderma dryinum HHB_7517' 'Cyanosporus alni Cui_7185' 'Cyanosporus alni Dai_12709' 'Cyanosporus caesius Miettinen_141562' 'Cyanosporus caesius Miettinen_19424' 'Cyanosporus subcaesius Spirin_6083' 'Cyanosporus subcaesius Vlas_011024' 'Cyanosporus tricolor Cui_10780' 'Cyanosporus tricolor Cui_10790' 'Cyanosporus ungulatus Cui_10778' 'Cyanosporus ungulatus Dai_12897' 'Cymatoderma sp OMC_1427' 'Cystidiopostia hibernica Cui_17624' 'Cystidiopostia hibernica Cui_2658' 'Cystidiopostia pileata Cui_10034' 'Cystidiopostia pileata Cui_5721' 'Cystidiopostia subhibernica Cui_17095' 'Cystidiopostia subhibernica Cui_8248' 'Dacryobolus sudans FP_101996' 'Dacryobolus sudans FP_150381' 'Daedalea africana O_15372' 'Daedalea allantoidea Dai_13612A' 'Daedalea americana JV_090919' 'Daedalea americana JV_090920' 'Daedalea circularis Cui_10125' 'Daedalea circularis Cui_10134' 'Daedalea dickinsii Yuan_2685' 'Daedalea dickinsii Yuan_2707' 'Daedalea dochmia CBS_42684' 'Daedalea hydnoides O_14083' 'Daedalea modesta Cui_10124' 'Daedalea modesta Cui_10151' 'Daedalea neotropica DLC04_100' 'Daedalea neotropica DLC04_174' Daedalea_pseudodochmia_10533 'Daedalea quercina Dai_12152' 'Daedalea quercina Dai_2260' 'Daedalea radiata Cui_8575' 'Daedalea radiata Cui_8624' 'Daedalea sp Cui_16751' 'Daedalea sprucei O_10546' Daedalea_stereoides_10551 'Daedalea stevensonii O_10543' 'Daedalea submodesta Cui_16748' 'Daedalea submodesta Cui_16773' 'Daedalea submodesta Cui_16786' 'Daedalea vinacea Dai_17823' 'Daedalea vinacea Dai_18551' 'Daedalea vinacea Dai_18562' 'Daedalella micropora Dai_18509' 'Daedalella micropora E_7389' 'Dentiporus albidoides X_1510' 'Dentiporus albidoides X_1513' 'Dentiporus albidoides X_1794' 'Dextrinoporus aquaticus Yuan_6945' 'Dextrinoporus aquaticus Yuan_6948' 'Diplomitoporus crustulinus Cui_17394' 'Diplomitoporus crustulinus Cui_17475' 'Diplomitoporus crustulinus Cui_17690' 'Diplomitoporus crustulinus FD_137' 'Diplomitoporus flavescens Cui_17419' 'Diplomitoporus flavescens Cui_17457' 'Diplomitoporus flavescens Dai_21020' 'Diplomitoporus flavescens H_Gunter' 'Donkioporiella mellea LWZ_2014062212' 'Donkioporiella mellea LWZ_2014062215' 'Efibula americana FP_102165' 'Efibula tuberculata OM_6707' 'Fibroporia albicans Cui_9405' 'Fibroporia albicans Cui_9495' 'Fibroporia ceracea Cui_16299' 'Fibroporia ceracea Cui_16300' 'Fibroporia vaillantii FP_90877' 'Fibroporia vaillantii RWD_63_263' 'Flavidoporia mellita VS_3315' 'Flavidoporia pulverulenta Dai_15877' 'Flavidoporia pulverulenta LY_BR_3450' 'Flavidoporia pulvinascens Miettinen_7488' 'Flavidoporia pulvinascens X_1372' 'Fomitopsis betulina Cui_10309' 'Fomitopsis betulina Cui_10756' 'Fomitopsis cana Cui_6239' 'Fomitopsis cana Dai_9611' 'Fomitopsis meliae Dai_10035' 'Fomitopsis meliae Ryvarden_16893' 'Fomitopsis palustris Cui_7597' 'Fomitopsis palustris Cui_7615' 'Fomitopsis pinicola HK_19330' 'Fomitopsis pinicola LT_323' 'Fomitopsis subtropica Cui_10181' 'Fomitopsis subtropica Cui_10578' 'Fragifomes niveomarginatus Cui_10108' 'Fragifomes niveomarginatus Wei_5583' 'Fragiliporia fragilis Dai_13080' 'Fragiliporia fragilis Dai_13559' 'Fuscopostia duplicata Cui_10366' 'Fuscopostia duplicata Cui_17086' 'Fuscopostia duplicata Dai_13411' 'Fuscopostia fragilis Cui_10020' 'Fuscopostia fragilis Cui_10088' 'Fuscopostia leucomallella Cui_9577' 'Fuscopostia leucomallella Cui_9599' 'Fuscopostia subfragilis Cui_16282' 'Fuscopostia subfragilis Cui_16302' 'Ganoderma lucidum Cui_14405' 'Ganoderma tsugae Cui_14112' 'Gilbertsonia angulopora FP_133019' 'Gloeoporellus merulinus Cui_16676' 'Gloeoporellus merulinus Dai_18734' 'Gloeoporellus merulinus Dai_18735' 'Gloeoporellus merulinus Dai_18782' 'Grifola frondosa AFTOL_701' 'Grifola sordulenta AFTOL_562' 'Heterobasidion linzhiense Cui_9695' 'Hyphoderma litschaueri FP_101740' 'Hyphoderma setigerum FD_312' 'Irpex lacteus FD_9' 'Ischnoderma resinosum FD_328' 'Ischnoderma resinosum NAMA_2017151' 'Kusaghiporia usambarensis JMH_01' 'Kusaghiporia usambarensis JMH_02' 'Laetiporus cremeiporus Cui_10586' 'Laetiporus cremeiporus Dai_10107' 'Laetiporus medogensis Cui_12219' 'Laetiporus medogensis Cui_12240' 'Laetiporus montanus Cui_10011' 'Laetiporus montanus Cui_10015' 'Laetiporus persicinus HHB_9564' 'Laetiporus persicinus RLG_14725' 'Laetiporus sulphureus Cui_12388' 'Laetiporus sulphureus Cui_12389' 'Laricifomes officinalis JV_030949_J' 'Laricifomes officinalis JV_901014' 'Lentoporia carbonica DAOM_F_8281' 'Lentoporia carbonica FP_105585' 'Lentoporia subcarbonica Cui_10614' 'Lentoporia subcarbonica Cui_12212' 'Leptoporus mollis Dai_21062' 'Leptoporus mollis JV_12117' 'Leptoporus mollis LE_BIN_3849' 'Leptoporus mollis RLG_7163' 'Leptoporus submollis Cui_17514' 'Leptoporus submollis Cui_17584' 'Leptoporus submollis TJV_93_174_T' 'Leptoporus submollis UBC_F_33248' 'Luteoporia albomarginata Dai_15229' 'Luteoporia albomarginata Dai_15240' 'Melanoporia castanea X_1284' 'Melanoporia tropica Cui_16444' 'Melanoporia tropica Cui_16455' 'Meripilus giganteus FP_135344' 'Neoantrodia kmetii JV_961013' 'Neoantrodia kmetii PRM_837474' 'Neoantrodia serialis JV_15095' 'Neoantrodia serialis TP_243' 'Neoantrodia variiformis CBS_30982' 'Neoantrodia variiformis FP_104442' 'Neolentiporus maculatissimus CIEFAP_92' 'Neolentiporus maculatissimus CIEFAP_93' 'Neolentiporus tropicus Cui_13915' 'Neolentiporus tropicus Cui_13923' Niveoporofomes_spraguei_4638 'Niveoporofomes spraguei Cui_8969' 'Niveoporofomes spraguei JV_050962' 'Nothofagiporus venatus CIEFAP_346' 'Nothofagiporus venatus Cui_16616' 'Nothofagiporus venatus Cui_16617' 'Obba rivulosa FP_135416' 'Obba valdiviana FF_484' 'Obba valdiviana FF_503' 'Oligoporus rennyi KEW_57' 'Oligoporus rennyi TN_6645' 'Oligoporus sericeomollis Cui_9560' 'Oligoporus sericeomollis Cui_9870' 'Oligoporus subsericeomollis Dai_21034' 'Osteina obducta Cui_10074' 'Osteina obducta Cui_9959' 'Osteina undosa Cui_16651' 'Osteina undosa Dai_7105' 'Osteina undosa L_6646' 'Panus fragilis HHB_11042' 'Perenniporia medullapanis Cui_14515' 'Perenniporia substraminea Cui_10191' 'Phaeolus fragilis Cui_16579' 'Phaeolus fragilis Dai_8025' 'Phaeolus schweinitzii FP_133218' 'Phaeolus schweinitzii OKM_4435_T' 'Physisporinus sp Miettinen_15239' 'Physisporinus sp Miettinen_16699' 'Piptoporellus hainanensis Dai_13714' 'Piptoporellus soloniensis Cui_11390' 'Piptoporellus soloniensis LY_BR_5463' 'Piptoporellus triqueter Dai_13121' 'Podoscypha parvula CBS_33166' 'Polyporus squamosus Cui_10595' 'Polyporus varius Cui_12249' 'Postia amurensis Cui_1044' 'Postia amurensis Dai_903' 'Postia carbophila MR_10758' 'Postia carbophila MR_12281' 'Postia crassicontexta Cui_16637' 'Postia hirsuta Cui_11180' 'Postia hirsuta Cui_11237' 'Postia lactea Cui_11511' 'Postia lactea Cui_12141' 'Postia lowei Cui_9585' 'Postia lowei X_1417' 'Postia ochraceoalba Cui_10802' 'Postia ochraceoalba Cui_10825' 'Postia sublowei Cui_9352' 'Postia sublowei Cui_9597' 'Postia tephroleuca Cui_10047' 'Postia tephroleuca Cui_6020' 'Pseudoantrodia monomitica Dai_10828' 'Pseudoantrodia monomitica Dai_13381' 'Pseudofibroporia citrinella He_20120721' 'Pseudofibroporia citrinella Yuan_6181' 'Pseudofomitopsis microcarpa Cui_16404' 'Pseudofomitopsis microcarpa Cui_16406' 'Pycnoporellus fulgens Cui_16463' 'Pycnoporellus fulgens FP_133367' 'Resinoporia cincta Dai_12739' 'Resinoporia cincta JV_100912' 'Resinoporia crassa Junninen_6446' 'Resinoporia crassa Kinnunen_3476' 'Resinoporia cretacea JV_12071' 'Resinoporia ferox JV_120975' 'Resinoporia ignobilis JV_120936' 'Resinoporia ladiana JV_100865' 'Resinoporia luteola Cui_16472' 'Resinoporia luteola Cui_16473' 'Resinoporia luteola Cui_16474' 'Resinoporia piceata JV_111014' 'Resinoporia pinea Cui_6522' 'Resinoporia pinea Cui_6529' 'Resinoporia pini cubensis_JV_100866' 'Resinoporia sitchensis JV_100867' 'Resinoporia sitchensis VS_8782' 'Resinoporia sordida JV_0509190' 'Resinoporia sordida Miettinen_16954' 'Rhizoporia hyalina VS_2532' 'Rhizoporia hyalina VS_2772' 'Rhodoantrodia tropica Dai_13428' 'Rhodoantrodia tropica Dai_13434' 'Rhodofomes roseus Cui_10520' 'Rhodofomes roseus Cui_10633' 'Rhodofomes subfeei Cui_9229' 'Rhodofomes subfeei Dai_11887' 'Rhodofomitopsis feei Oinonen_6011906' 'Rhodofomitopsis feei Ryvarden_37603' 'Rhodofomitopsis monomitic Dai_10630' 'Rhodofomitopsis monomitic Dai_16894' 'Rhodofomitopsis oleracea MD_177' 'Rhodofomitopsis oleracea RLG_3818' 'Rhodonia placenta TN_7609' 'Rhodonia placenta Wei_1406' 'Rhodonia rancida Cui_12317' 'Rhodonia rancida Cui_12339' 'Rhodonia subrancida Cui_16462' 'Rigidoporus undatus Miettinen_13591' 'Rubellofomes cystidiatus Cui_5481' 'Rubellofomes cystidiatus Yuan_6304' 'Ryvardenia campyla CIEFAP_197' 'Ryvardenia campyla CIEFAP_200' 'Ryvardenia campyla Cui_16674' 'Ryvardenia cretacea CFMR_6449' 'Ryvardenia cretacea ICMP_11789' 'Ryvardenia subcretacea Cui_16731' 'Ryvardenia subcretacea Cui_16732' 'Sarcoporia polyspora 234_36' 'Sarcoporia polyspora Cui_16977' 'Skeletocutis amorpha Miettinen_11038' 'Skeletocutis lilacina HHB_10522' 'Skeletocutis nivea Miettinen_9950' 'Sparassis crispa AFTOL_ID_703' 'Sparassis crispa MBUH_DORISL' 'Sparassis radicata SS_29' 'Sparassis radicata TENN_52558' 'Spongiporus floriformis Cui_10292' 'Spongiporus floriformis Dai_13887' 'Spongiporus gloeoporus Cui_10401' 'Spongiporus gloeoporus Cui_9507' 'Steccherinum bourdotii HHB_9743' 'Steccherinum nitidum FP_105195' 'Steccherinum tenue FP_102082' Subantrodia_juniperina_030101a 'Subantrodia uzbekistanica Dai_17104' 'Subantrodia uzbekistanica Dai_17105' 'Taiwanofungus camphoratus ACT_1' 'Taiwanofungus camphoratus ACT_2' 'Taiwanofungus camphoratus Cui_17234' 'Taiwanofungus camphoratus Cui_17235' 'Taiwanofungus camphoratus Cui_17285A' 'Taiwanofungus salmoneus B_147' 'Taiwanofungus salmoneus B_492' 'Tenuipostia dissecta CIEFAP_328' 'Tenuipostia dissecta Cui_16555' 'Tenuipostia dissecta Cui_16560' 'Tenuipostia dissecta MR_12423' 'Trametes suaveolens Cui_10701' 'Trametes versicolor Cui_9310' 'Trametopsis cervina AJ_185' 'Tyromyces chioneus FD_4' 'Tyromyces galactinus L_15951' 'Ungulidaedalea fragilis Cui_10919' Wolfiporia_cocos_B5 'Wolfiporia cocos CBK_1' 'Wolfiporia cocos CBK_2' 'Wolfiporia cocos Dai_13738' 'Wolfiporia cocos WTS_3' 'Wolfiporia cocos XJ_28' 'Wolfiporia pseudococos Dai_15269' 'Wolfiporiella cartilaginea Dai_3764' 'Wolfiporiella cartilaginea O_913120' 'Wolfiporiella dilatohypha CS_635913_AR' 'Wolfiporiella dilatohypha FP_94089' 'Wolfiporiopsis castanopsidis Cui_16295' 'Wolfiporiopsis castanopsidis Cui_16296' ; END; BEGIN TREES; TITLE Polyporales_antrodia_clade_7; LINK TAXA = TaxaForAnalysisStep29217; TREE tree_1 = [&R] (((((((((((((((((((((((((((('Daedalea vinacea Dai_17823':0.006811,'Daedalea vinacea Dai_18551':0.01022):8.25E-4,'Daedalea vinacea Dai_18562':0.005451):0.0031,(('Daedalea submodesta Cui_16773':5.98E-4,'Daedalea submodesta Cui_16786':8.42E-4):0.001969,'Daedalea submodesta Cui_16748':0.003138):0.008147):0.008459,('Daedalea modesta Cui_10124':0.003049,'Daedalea modesta Cui_10151':0.00309):0.014563):0.030159,(((Daedalea_stereoides_10551:0.019945,'Daedalea allantoidea Dai_13612A':0.024106):0.014455,'Daedalea sp Cui_16751':0.053272):0.006351,('Daedalea americana JV_090920':7.3E-4,'Daedalea americana JV_090919':5.32E-4):0.048389):0.006136):0.012581,'Daedalea africana O_15372':0.109764):0.011019,(((((('Daedalea dickinsii Yuan_2707':1.0E-6,'Daedalea dickinsii Yuan_2685':0.007184):0.004893,Daedalea_pseudodochmia_10533:1.0E-6):0.00741,('Daedalea quercina Dai_2260':4.76E-4,'Daedalea quercina Dai_12152':4.45E-4):0.012221):0.019391,('Daedalea neotropica DLC04_100':0.003481,'Daedalea neotropica DLC04_174':1.0E-6):0.060365):0.014202,((('Daedalea circularis Cui_10134':8.52E-4,'Daedalea circularis Cui_10125':4.58E-4):0.006796,('Daedalea hydnoides O_14083':9.45E-4,'Daedalea stevensonii O_10543':8.95E-4):0.001609):0.003277,'Daedalea sprucei O_10546':0.007185):0.041457):0.03946,'Daedalea dochmia CBS_42684':0.085197):0.014471):0.021157,('Daedalea radiata Cui_8575':0.008169,'Daedalea radiata Cui_8624':0.013523):0.117577):0.012393,('Daedalella micropora Dai_18509':1.0E-6,'Daedalella micropora E_7389':1.0E-6):0.147756):0.008397,((((('Brunneoporus tuvensis Kotiranta_267351':1.0E-6,'Brunneoporus tuvensis Kotiranta_267352':1.0E-6):0.028332,('Brunneoporus malicolus Miettinen_10595':1.0E-6,'Brunneoporus malicolus Cui_9491':0.002323):0.011907):0.021244,('Rhizoporia hyalina VS_2532':1.0E-6,'Rhizoporia hyalina VS_2772':1.0E-6):0.1444):0.040413,('Pseudoantrodia monomitica Dai_13381':1.0E-6,'Pseudoantrodia monomitica Dai_10828':0.003508):0.079784):0.034185,'Ungulidaedalea fragilis Cui_10919':0.127252):0.006503):0.008377,((('Flavidoporia pulverulenta Dai_15877':1.0E-6,'Flavidoporia pulverulenta LY_BR_3450':1.0E-6):0.002292,'Flavidoporia mellita VS_3315':0.001273):7.6E-5,('Flavidoporia pulvinascens Miettinen_7488':1.0E-6,'Flavidoporia pulvinascens X_1372':1.0E-6):0.004891):0.105838):0.004557,(((('Rhodofomitopsis oleracea RLG_3818':0.001242,'Rhodofomitopsis oleracea MD_177':0.001273):0.039158,('Rhodofomitopsis monomitic Dai_16894':1.0E-6,'Rhodofomitopsis monomitic Dai_10630':8.62E-4):0.031143):0.076065,('Rhodofomitopsis feei Ryvarden_37603':0.044954,'Rhodofomitopsis feei Oinonen_6011906':0.010614):0.081509):0.051186,('Pseudofomitopsis microcarpa Cui_16404':0.010854,'Pseudofomitopsis microcarpa Cui_16406':0.003371):0.197635):0.017309):0.006664,(((((('Fomitopsis cana Cui_6239':0.002237,'Fomitopsis cana Dai_9611':7.68E-4):0.023338,('Fomitopsis meliae Ryvarden_16893':0.015702,'Fomitopsis meliae Dai_10035':0.007449):0.015318):0.027283,('Fomitopsis subtropica Cui_10578':3.42E-4,'Fomitopsis subtropica Cui_10181':9.26E-4):0.049462):0.006874,('Fomitopsis palustris Cui_7597':0.001486,'Fomitopsis palustris Cui_7615':0.006051):0.066363):0.016089,(('Fomitopsis betulina Cui_10756':0.002344,'Fomitopsis betulina Cui_10309':1.34E-4):0.066338,('Fomitopsis pinicola HK_19330':0.003285,'Fomitopsis pinicola LT_323':8.83E-4):0.027996):0.01082):0.038239,(('Piptoporellus triqueter Dai_13121':0.058801,'Piptoporellus hainanensis Dai_13714':0.005603):0.071956,('Piptoporellus soloniensis Cui_11390':0.004643,'Piptoporellus soloniensis LY_BR_5463':0.007982):0.082805):0.120026):0.044211):0.020736,((((((('Neoantrodia kmetii PRM_837474':1.0E-6,'Neoantrodia kmetii JV_961013':7.77E-4):0.016769,('Neoantrodia serialis JV_15095':1.0E-6,'Neoantrodia serialis TP_243':1.0E-6):0.027113):0.007446,('Neoantrodia variiformis FP_104442':1.0E-6,'Neoantrodia variiformis 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Miettinen_15239':0.069082):0.078058,('Meripilus giganteus FP_135344':0.135953,'Rigidoporus undatus Miettinen_13591':0.10603):0.020469):0.092904,('Podoscypha parvula CBS_33166':0.321337,'Abortiporus biennis FD_319':0.069228):0.151679):0.06391,(('Panus fragilis HHB_11042':0.126557,'Cymatoderma sp OMC_1427':0.156984):0.081387,('Cerrena zonata CLZhao_1110':0.023714,'Cerrena unicolor FD_299':0.040729):0.166678):0.060503):0.016418,((((('Steccherinum bourdotii HHB_9743':0.121371,'Steccherinum tenue FP_102082':0.06258):0.030189,'Steccherinum nitidum FP_105195':0.108226):0.040076,('Antrodiella stipitata FD_136':1.0E-6,'Antrodiella stipitata Yuan_5640':0.002549):0.09982):0.03169,('Atraporiella yunnanensis CLZhao_603':1.0E-6,'Atraporiella yunnanensis CLZhao_605':0.003801):0.093788):0.12079,('Hyphoderma litschaueri FP_101740':0.137574,'Hyphoderma setigerum FD_312':0.171308):0.120281):0.056629):0.021218,((((('Diplomitoporus crustulinus Cui_17475':3.36E-4,'Diplomitoporus crustulinus Cui_17394':1.0E-6):1.0E-6,'Diplomitoporus crustulinus Cui_17690':6.51E-4):0.006871,'Diplomitoporus crustulinus FD_137':0.004575):0.021846,(('Diplomitoporus flavescens H_Gunter':1.0E-6,'Diplomitoporus flavescens Cui_17457':0.004473):0.003413,('Diplomitoporus flavescens Dai_21020':0.003859,'Diplomitoporus flavescens Cui_17419':0.001962):0.005633):0.02331):0.122777,(('Climacocystis montana Cui_9607':0.002295,'Climacocystis montana Cui_17502':6.51E-4):0.002241,'Climacocystis borealis Dai_4014':0.016733):0.053299):0.062633):0.04407,('Ischnoderma resinosum FD_328':1.0E-6,'Ischnoderma resinosum NAMA_2017151':1.0E-6):0.27071):0.036727,(((((('Leptoporus submollis TJV_93_174_T':0.002055,'Leptoporus submollis UBC_F_33248':1.0E-6):0.001119,('Leptoporus submollis Cui_17514':4.04E-4,'Leptoporus submollis Cui_17584':0.00105):0.00191):0.007981,((('Leptoporus mollis LE_BIN_3849':1.0E-6,'Leptoporus mollis Dai_21062':1.0E-6):1.0E-6,'Leptoporus mollis JV_12117':1.0E-6):0.008065,'Leptoporus mollis RLG_7163':0.005827):0.00651):0.204145,(((('Irpex lacteus FD_9':0.056651,'Ceriporia lacerata FP_55521_T':0.056925):0.069269,'Byssomerulius corium FP_102382':0.103677):0.023677,('Efibula americana FP_102165':0.024959,'Efibula tuberculata OM_6707':0.01959):0.101477):0.034044,'Trametopsis cervina AJ_185':0.157476):0.047133):0.071754,('Bjerkandera aff centroamericana_L_13104':0.04712,'Bjerkandera adusta HHB_12826':0.045651):0.226467):0.032973,((('Ceriporiopsis gilvescens Dai_12694':0.015179,'Ceriporiopsis gilvescens Yuan_2654':1.0E-6):0.09054,('Luteoporia albomarginata Dai_15240':0.001283,'Luteoporia albomarginata Dai_15229':1.0E-6):0.111805):0.063381,('Aurantiporus croceus Miettinen_16483':0.15811,'Aurantiporus albidus CIEFAP_117':0.051603):0.038017):0.092766):0.081018):0.02088):0.127434,('Heterobasidion linzhiense Cui_9695':0.110813,'Bondarzewia podocarpi Cui_6380':0.161895):0.127434); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr132430] END; [ The following blocks are output data for analysis step 29217 ] BEGIN TREES; TITLE Polyporales_antrodia_clade_7; LINK TAXA = TaxaForAnalysisStep29217; TREE tree_1 = [&R] (((((((((((((((((((((((((((('Daedalea vinacea Dai_17823':0.006811,'Daedalea vinacea Dai_18551':0.01022):8.25E-4,'Daedalea vinacea Dai_18562':0.005451):0.0031,(('Daedalea submodesta Cui_16773':5.98E-4,'Daedalea submodesta Cui_16786':8.42E-4):0.001969,'Daedalea submodesta Cui_16748':0.003138):0.008147):0.008459,('Daedalea modesta Cui_10124':0.003049,'Daedalea modesta Cui_10151':0.00309):0.014563):0.030159,(((Daedalea_stereoides_10551:0.019945,'Daedalea allantoidea Dai_13612A':0.024106):0.014455,'Daedalea sp Cui_16751':0.053272):0.006351,('Daedalea americana JV_090920':7.3E-4,'Daedalea americana JV_090919':5.32E-4):0.048389):0.006136):0.012581,'Daedalea africana O_15372':0.109764):0.011019,(((((('Daedalea dickinsii Yuan_2707':1.0E-6,'Daedalea dickinsii Yuan_2685':0.007184):0.004893,Daedalea_pseudodochmia_10533:1.0E-6):0.00741,('Daedalea quercina Dai_2260':4.76E-4,'Daedalea quercina Dai_12152':4.45E-4):0.012221):0.019391,('Daedalea neotropica DLC04_100':0.003481,'Daedalea neotropica DLC04_174':1.0E-6):0.060365):0.014202,((('Daedalea circularis Cui_10134':8.52E-4,'Daedalea circularis Cui_10125':4.58E-4):0.006796,('Daedalea hydnoides O_14083':9.45E-4,'Daedalea stevensonii O_10543':8.95E-4):0.001609):0.003277,'Daedalea sprucei O_10546':0.007185):0.041457):0.03946,'Daedalea dochmia CBS_42684':0.085197):0.014471):0.021157,('Daedalea radiata Cui_8575':0.008169,'Daedalea radiata Cui_8624':0.013523):0.117577):0.012393,('Daedalella micropora Dai_18509':1.0E-6,'Daedalella micropora E_7389':1.0E-6):0.147756):0.008397,((((('Brunneoporus tuvensis Kotiranta_267351':1.0E-6,'Brunneoporus tuvensis Kotiranta_267352':1.0E-6):0.028332,('Brunneoporus malicolus Miettinen_10595':1.0E-6,'Brunneoporus malicolus Cui_9491':0.002323):0.011907):0.021244,('Rhizoporia hyalina VS_2532':1.0E-6,'Rhizoporia hyalina VS_2772':1.0E-6):0.1444):0.040413,('Pseudoantrodia monomitica Dai_13381':1.0E-6,'Pseudoantrodia monomitica Dai_10828':0.003508):0.079784):0.034185,'Ungulidaedalea fragilis Cui_10919':0.127252):0.006503):0.008377,((('Flavidoporia pulverulenta Dai_15877':1.0E-6,'Flavidoporia pulverulenta LY_BR_3450':1.0E-6):0.002292,'Flavidoporia mellita VS_3315':0.001273):7.6E-5,('Flavidoporia pulvinascens Miettinen_7488':1.0E-6,'Flavidoporia pulvinascens X_1372':1.0E-6):0.004891):0.105838):0.004557,(((('Rhodofomitopsis oleracea RLG_3818':0.001242,'Rhodofomitopsis oleracea MD_177':0.001273):0.039158,('Rhodofomitopsis monomitic Dai_16894':1.0E-6,'Rhodofomitopsis monomitic Dai_10630':8.62E-4):0.031143):0.076065,('Rhodofomitopsis feei Ryvarden_37603':0.044954,'Rhodofomitopsis feei Oinonen_6011906':0.010614):0.081509):0.051186,('Pseudofomitopsis microcarpa Cui_16404':0.010854,'Pseudofomitopsis microcarpa Cui_16406':0.003371):0.197635):0.017309):0.006664,(((((('Fomitopsis cana Cui_6239':0.002237,'Fomitopsis cana Dai_9611':7.68E-4):0.023338,('Fomitopsis meliae Ryvarden_16893':0.015702,'Fomitopsis meliae Dai_10035':0.007449):0.015318):0.027283,('Fomitopsis subtropica Cui_10578':3.42E-4,'Fomitopsis subtropica Cui_10181':9.26E-4):0.049462):0.006874,('Fomitopsis palustris Cui_7597':0.001486,'Fomitopsis palustris Cui_7615':0.006051):0.066363):0.016089,(('Fomitopsis betulina Cui_10756':0.002344,'Fomitopsis betulina Cui_10309':1.34E-4):0.066338,('Fomitopsis pinicola HK_19330':0.003285,'Fomitopsis pinicola LT_323':8.83E-4):0.027996):0.01082):0.038239,(('Piptoporellus triqueter Dai_13121':0.058801,'Piptoporellus hainanensis Dai_13714':0.005603):0.071956,('Piptoporellus soloniensis Cui_11390':0.004643,'Piptoporellus soloniensis LY_BR_5463':0.007982):0.082805):0.120026):0.044211):0.020736,((((((('Neoantrodia kmetii PRM_837474':1.0E-6,'Neoantrodia kmetii JV_961013':7.77E-4):0.016769,('Neoantrodia serialis JV_15095':1.0E-6,'Neoantrodia serialis TP_243':1.0E-6):0.027113):0.007446,('Neoantrodia variiformis FP_104442':1.0E-6,'Neoantrodia variiformis CBS_30982':0.028891):0.017921):0.042845,('Rubellofomes cystidiatus Yuan_6304':0.001233,'Rubellofomes cystidiatus Cui_5481':0.00225):0.101324):0.00816,(('Subantrodia uzbekistanica Dai_17105':1.0E-6,'Subantrodia uzbekistanica Dai_17104':0.006457):0.002183,Subantrodia_juniperina_030101a:0.015933):0.064278):0.01349,(('Rhodofomes roseus Cui_10520':0.001342,'Rhodofomes roseus Cui_10633':9.53E-4):0.03729,('Rhodofomes subfeei Cui_9229':0.004261,'Rhodofomes subfeei Dai_11887':0.002839):0.032212):0.061819):0.013887,((('Melanoporia tropica Cui_16444':1.0E-6,'Melanoporia tropica Cui_16455':0.005559):0.045508,'Melanoporia castanea X_1284':0.033807):0.048505,('Fragifomes niveomarginatus Cui_10108':0.003109,'Fragifomes niveomarginatus Wei_5583':3.31E-4):0.196321):0.026468):0.00937):0.013263,((('Dentiporus albidoides X_1513':1.0E-6,'Dentiporus albidoides X_1510':1.0E-6):0.001744,'Dentiporus albidoides X_1794':0.001717):0.104604,((Niveoporofomes_spraguei_4638:1.0E-6,'Niveoporofomes spraguei JV_050962':0.005488):0.010181,'Niveoporofomes spraguei Cui_8969':0.010968):0.109168):0.013726):0.028947,(('Rhodoantrodia tropica Dai_13434':0.018087,'Rhodoantrodia tropica Dai_13428':0.020415):0.11725,('Cartilosoma ramentacea Dai_6082':0.019945,'Cartilosoma ramentacea PK_7419':0.018935):0.060606):0.021273):0.042122,((('Buglossoporus eucalypticola Dai_13660':8.35E-4,'Buglossoporus eucalypticola Dai_13660A':1.0E-6):0.057098,('Buglossoporus quercinus JV_090615_J':8.84E-4,'Buglossoporus quercinus JV_14061':8.44E-4):0.057513):0.078359,(('Neolentiporus maculatissimus CIEFAP_92':0.001662,'Neolentiporus maculatissimus CIEFAP_93':1.0E-6):0.031206,('Neolentiporus tropicus Cui_13923':0.012911,'Neolentiporus tropicus Cui_13915':1.0E-6):0.079235):0.026735):0.097533):0.01511,(((('Antrodia subheteromorpha Cui_9617':0.013541,'Antrodia subheteromorpha Cui_18416':0.018065):0.006571,('Antrodia heteromorpha Kosolapov_VIII_2003':1.0E-6,'Antrodia heteromorpha Dai_12755':1.0E-6):0.014166):0.01285,(('Antrodia subserpens Dai_13233':0.00158,'Antrodia subserpens Cui_8310':0.001806):0.030987,('Antrodia serpens Dai_14850':0.001371,'Antrodia serpens Dai_7465':0.002537):0.020495):0.010095):0.012453,(('Antrodia tanakae Cui_9743':0.012583,'Antrodia tanakae Yuan_1106':0.008486):0.012372,('Antrodia favescens FP_103723':0.009338,'Antrodia favescens JV_04124_J':1.0E-6):0.025864):0.00948):0.113258):0.027728,('Anthoporia albobrunnea FP_100514':1.0E-6,'Anthoporia albobrunnea S_4665':0.005824):0.145239):0.043087,(((('Ryvardenia cretacea CFMR_6449':1.0E-6,'Ryvardenia cretacea ICMP_11789':1.0E-6):0.956192,('Ryvardenia subcretacea Cui_16731':3.01E-4,'Ryvardenia subcretacea Cui_16732':1.0E-6):1.0E-6):0.028658,(('Ryvardenia campyla CIEFAP_200':1.0E-6,'Ryvardenia campyla CIEFAP_197':1.0E-6):1.0E-6,'Ryvardenia campyla Cui_16674':1.0E-6):0.019731):0.081269,(('Laricifomes officinalis JV_901014':1.0E-6,'Laricifomes officinalis JV_030949_J':1.0E-6):0.04572,'Gilbertsonia angulopora FP_133019':0.068605):0.033649):0.086963):0.026774,((((((((((((('Resinoporia sordida JV_0509190':1.0E-6,'Resinoporia sordida Miettinen_16954':1.0E-6):1.0E-6,'Resinoporia sitchensis VS_8782':1.0E-6):1.0E-6,'Resinoporia sitchensis JV_100867':1.0E-6):0.001203,'Resinoporia ignobilis JV_120936':0.004738):9.91E-4,'Resinoporia piceata JV_111014':0.005958):0.090858,((('Resinoporia crassa Kinnunen_3476':1.0E-6,'Resinoporia crassa Junninen_6446':1.0E-6):0.017907,'Resinoporia cretacea JV_12071':0.005079):0.009482,('Resinoporia cincta JV_100912':0.065898,'Resinoporia cincta Dai_12739':0.003486):0.00919):0.067858):0.023105,(((('Resinoporia luteola Cui_16473':0.001618,'Resinoporia luteola Cui_16474':0.003917):6.63E-4,'Resinoporia luteola Cui_16472':0.001485):0.020687,('Resinoporia pinea Cui_6529':0.00173,'Resinoporia pinea Cui_6522':0.043833):0.020678):0.0187,('Resinoporia ferox JV_120975':0.063827,'Resinoporia ladiana JV_100865':0.013522):0.065851):0.036478):0.014264,'Resinoporia pini cubensis_JV_100866':0.166308):0.057635,((((('Austroporia stratosa FF_263':1.0E-6,'Austroporia stratosa Cui_16619':1.0E-6):2.91E-4,'Austroporia stratosa Cui_16613':1.0E-6):1.0E-6,'Austroporia stratosa FF_461':1.0E-6):2.91E-4,'Austroporia stratosa Cui_16612':1.0E-6):3.84E-4,'Austroporia stratosa Cui_16618':7.13E-4):0.089554):0.038595,((('Adustoporia sinuosa Cui_16253':0.008193,'Adustoporia sinuosa Cui_16484':0.002018):0.002798,'Adustoporia sinuosa Cui_9654':0.012214):9.44E-4,'Adustoporia sinuosa JV_050917':1.0E-6):0.143392):0.011047,((((('Amyloporia nivea Cui_16478':8.64E-4,'Amyloporia nivea Cui_16480':4.82E-4):1.0E-6,'Amyloporia nivea Cui_16479':0.00103):0.005078,('Amyloporia xantha Cui_11544':0.00215,'Amyloporia xantha Cui_11677':0.004561):0.003492):0.020313,(('Amyloporia alpina RLG_6107':0.018197,'Amyloporia alpina FP_105523':0.002033):0.040817,('Amyloporia subxantha Cui_17174':0.001835,'Amyloporia subxantha Cui_10572':0.00338):0.053216):0.003015):0.084466,((('Lentoporia subcarbonica Cui_10614':0.001986,'Lentoporia subcarbonica Cui_12212':0.002323):0.02347,'Lentoporia carbonica DAOM_F_8281':1.0E-6):0.009443,'Lentoporia carbonica FP_105585':0.002142):0.08095):0.022938):0.015821,((('Rhodonia rancida Cui_12317':1.0E-6,'Rhodonia rancida Cui_12339':1.0E-6):0.007299,'Rhodonia subrancida Cui_16462':0.024798):0.006115,('Rhodonia placenta TN_7609':0.00476,'Rhodonia placenta Wei_1406':0.003498):0.008533):0.153171):0.023088,(((('Fibroporia albicans Cui_9405':0.001358,'Fibroporia albicans Cui_9495':8.95E-4):0.052065,('Fibroporia vaillantii FP_90877':1.0E-6,'Fibroporia vaillantii RWD_63_263':1.0E-6):0.073492):0.015965,('Fibroporia ceracea Cui_16300':1.0E-6,'Fibroporia ceracea Cui_16299':2.68E-4):0.088376):0.03636,('Pseudofibroporia citrinella Yuan_6181':0.006622,'Pseudofibroporia citrinella He_20120721':0.045743):0.146464):0.158601):0.013029):0.011063,((((((((('Wolfiporiella cartilaginea O_913120':0.002752,'Wolfiporiella cartilaginea Dai_3764':1.0E-6):0.018255,('Wolfiporiella dilatohypha CS_635913_AR':1.0E-6,'Wolfiporiella dilatohypha FP_94089':1.0E-6):0.033197):0.135851,'Laetiporus cremeiporus Cui_10586':0.002302):0.00301,'Laetiporus cremeiporus Dai_10107':0.002974):0.021916,('Laetiporus sulphureus Cui_12389':5.09E-4,'Laetiporus sulphureus Cui_12388':1.0E-6):0.003933):0.002009,(('Laetiporus montanus Cui_10015':9.04E-4,'Laetiporus montanus Cui_10011':9.26E-4):0.015691,('Laetiporus medogensis Cui_12240':0.003087,'Laetiporus medogensis Cui_12219':1.0E-6):0.009624):0.005953):0.176919,((('Laetiporus persicinus RLG_14725':1.0E-6,'Laetiporus persicinus HHB_9564':0.001759):0.132097,('Wolfiporiopsis castanopsidis Cui_16295':3.39E-4,'Wolfiporiopsis castanopsidis Cui_16296':6.44E-4):0.065473):0.077943,('Kusaghiporia usambarensis JMH_02':0.004935,'Kusaghiporia usambarensis 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LE_BIN_3849':1.0E-6,'Leptoporus mollis Dai_21062':1.0E-6):1.0E-6,'Leptoporus mollis JV_12117':1.0E-6):0.008065,'Leptoporus mollis RLG_7163':0.005827):0.00651):0.204145,(((('Irpex lacteus FD_9':0.056651,'Ceriporia lacerata FP_55521_T':0.056925):0.069269,'Byssomerulius corium FP_102382':0.103677):0.023677,('Efibula americana FP_102165':0.024959,'Efibula tuberculata OM_6707':0.01959):0.101477):0.034044,'Trametopsis cervina AJ_185':0.157476):0.047133):0.071754,('Bjerkandera aff centroamericana_L_13104':0.04712,'Bjerkandera adusta HHB_12826':0.045651):0.226467):0.032973,((('Ceriporiopsis gilvescens Dai_12694':0.015179,'Ceriporiopsis gilvescens Yuan_2654':1.0E-6):0.09054,('Luteoporia albomarginata Dai_15240':0.001283,'Luteoporia albomarginata Dai_15229':1.0E-6):0.111805):0.063381,('Aurantiporus croceus Miettinen_16483':0.15811,'Aurantiporus albidus CIEFAP_117':0.051603):0.038017):0.092766):0.081018):0.02088):0.127434,('Heterobasidion linzhiense Cui_9695':0.110813,'Bondarzewia podocarpi Cui_6380':0.161895):0.127434); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr132430] END;