#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 03, 2024; 10:20 GMT

TreeBASE (cc) 1994-2008

Study reference:
Lee S., Lee I., & Suh Y. 2005. Molecular evidence for recognizing Antithamnion sparsum
(Ceramiales, Rhodophyta) at the species level. Phycologia, 44: 530-535.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1511]

[ The following blocks are input data for analysis step 2934 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2934;
        DIMENSIONS NTAX=11;
        TAXLABELS
            Antithamnion_aglandum
            Antithamnion_callocladum
            Antithamnion_defectum
            Antithamnion_densum
            Antithamnion_kylinii
            Antithamnion_nipponicum
            Antithamnion_sparsum_ASB
            Antithamnion_sparsum_ASM
            Antithamnion_sparsum_ASW
            Antithamnionella_sp_ATN
            Platythamnion_yezoense
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1112]

	TITLE Rubisco_spacer;
	LINK TAXA = TaxaForAnalysisStep2934;
	DIMENSIONS NCHAR=111;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                    10        20        30        40        50        60        70        80        90        100       110 ]
[                                     .         .         .         .         .         .         .         .         .         .         . ]
Antithamnion_aglandum        -AAGACTGTTTGTCTTTTATATTATTTGTTT--ATATTTTGCGTAAGCTTAGTCAATCAAAACATATTAAAATATTAATAATTGCTTAATCACCATAAGGAGTATATACTA
Antithamnion_callocladum     -AAGACTGTTTGTCTTTTATATTATTTGTTT--ATATTTTGCGTAAGCTTAGTCAATCAAAACAGATTAAAACATTAATAATTGCTTAATAACCATAAGGAGTATATAATA
Antithamnion_defectum        AAAAAATATTGAG--ATTTTATTATTTTTTTT-ATATTTTAAGCAAGCTTAGTCAATCAAAACATATTAAAGCATTAATAATTGTTTAATCACCATAAGGAGTATACACTA
Antithamnion_densum          AAAAAATATTG-----TTT-ATTATTTTTTT--ATATTTTAAGCAAGCTTAGTCAATCAAAACATATTAAAACATTAATAATTGTTTAATCACCATAAGGAGTATATACTA
Antithamnion_kylinii         AAAAAATATTGAG--ATTTTATTATTTTTTTT-ATATTTTAAGCAAGCTTAGTCAATCAAAACATATTAAAACATTAATAATTGTTTAATCACCATAAGGAGTATATACTA
Antithamnion_nipponicum      -AAGACTGTTTCTCTTTTATATTATTTGTTT--ATATTTTGCGTAAGCTTAGTAAATCAAAACATATTAAAATATTAATAATTGCTTAATCACCATAAGGAGTATATACTA
Antithamnion_sparsum_ASB     AAAAAATATTAAG--ATTTTATTATTTTTTTT-ATATTTTCAGCACGCTTAGTCAAGCAAAACATATTAAAGCATTAATAATTGTTTAATCACCATAAGGAGTATACACTA
Antithamnion_sparsum_ASM     AAAAAATATTAAG--ATTTTATTATTTTTTTT-ATATTTTCAGCACGCTTAGTCAAGCAAAACATATTAAAGCATTAATAATTGTTTAATCACCATAAGGAGTATACACTA
Antithamnion_sparsum_ASW     AAAAAATATTAAG--ATTTTATTATTTTTTTT-ATATTTTCAGCACGCTTAGTCAAGCAAAACATATTAAAGCATTAATAATTGTTTAATCACCATAAGGAGTATACACTA
Antithamnionella_sp_ATN      ----AATCTTTA---TATCTCTAATTTTTAC--ATGCTTCATGTAAATTTAGTGAATATCAAAA--TTCAAGCTTTAATAATTGCTTAACCATCATAAGGAGTACACAATA
Platythamnion_yezoense       -AATAATAATAAT-TAAAATATTATTTTATCGCGTATTTTACGTAAGCTTAGTAAATATAAACA-ATAAAAGCTTTAATAATTACTTAACCACCATAAGGAGTATAAAATA
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = Rubisco_spacer) = 
		N: 1-111;
CODONPOSSET  CodonPositions (CHARACTERS = Rubisco_spacer) = 
		N: 1-111;
END;
[ The following blocks are output data for analysis step 2934 ]
BEGIN TREES;
      TITLE Tb7707;
      LINK TAXA = TaxaForAnalysisStep2934;
      TREE Rubisco_spacer = [&R] (((((Antithamnion_aglandum,Antithamnion_nipponicum),Antithamnion_callocladum),((Antithamnion_sparsum_ASW,Antithamnion_sparsum_ASB,Antithamnion_sparsum_ASM),Antithamnion_defectum,Antithamnion_kylinii,Antithamnion_densum)),Platythamnion_yezoense),Antithamnionella_sp_ATN);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2402]


END;