#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 04, 2025; 20:45 GMT

TreeBASE (cc) 1994-2008

Study reference:
Lee S., Lee I., & Suh Y. 2005. Molecular evidence for recognizing Antithamnion sparsum
(Ceramiales, Rhodophyta) at the species level. Phycologia, 44: 530-535.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1511]

[ The following blocks are input data for analysis step 2935 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2935;
        DIMENSIONS NTAX=11;
        TAXLABELS
            Antithamnion_aglandum
            Antithamnion_callocladum
            Antithamnion_defectum
            Antithamnion_kylinii
            Antithamnion_nipponicum
            Antithamnion_sparsum_ASB
            Antithamnion_sparsum_ASM
            Antithamnion_sparsum_ASW
            Antithamnionella_sp_ATN
            Antithmanion_densum
            Platythamnion_yezoense
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1113]

	TITLE ITS1;
	LINK TAXA = TaxaForAnalysisStep2935;
	DIMENSIONS NCHAR=398;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                    10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390        ]
[                                     .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .        ]
Antithamnion_aglandum        AAATTTTATATATATATATATATGCTTATATCTTTT----GTG---CACATG---GCGGTCGATGCC----TTGTGCTCTCATCTTTTCC----GCAGTACACATCTGTGTGGCAGTGAACTTTTCATTCCGTTGGT-GTGTACTGTTTAAGGAACTAAGATTCGATTTGTGAGCTGCTGCCTTATTCTGTGCGCGCCACTTGACGCCTTGCGCTCTCGCTTTAACAAATATTGTGGTGTGTACAATTGTATACGCATATGTATATGTATATATATAT---ATTTATCCCGCGAACAAACTTTTGATTTTTATTTTTTTT--TTTAACTAAACCAAACC--------------------------AAACCA------AAACCCC-----AAATTTTTT
Antithamnion_callocladum     GAATTTATTATGT-----TATATGCTTATATGTTT-----GTG---CACACACTCGCGATTGATGCCGCTTTTTGGCTCTCGTCTTTACCCCC--CAGTGAGCACTTTTGTCGCAGTTCGCAAGAGCTCCTATTAGTCGTTTACTGG----GGG-CGG-GATTTGATT----------------------------------GAGTCCTTGTGCTCTCGCTATGGT---TGCTGCGGTGCATATTCCTCTATAT---CATGTATACATAAAT-TATAT---AT--ATCCCGCGAACGAACTTTTTAATTCTTATTTTTTT--TTTCTTAAACCCAAACC--------------------------AAACCA----AAAAACC----AAAATTATTTTT
Antithamnion_defectum        AAATTTTT----------GAGTTGCCAT--GGTTATCT--GTATA-CACA--------GTT----CC------TGGCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATTTATCCCGCGAACAAACTT--GATTTTTATTTTTTTTATTTTTTTTAAACCAAACC--------------------------AAACTTAT----AAACCCC-----AATATTTTT
Antithamnion_kylinii         AAATTTTT----------GAGATGCCAT--GGTTATCT--GTATTATGCA--------GTT----CC------TGGTTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATATATCCCGCGAACAAACTT--GATTTTTATTTTTTTTATTTTTTTTAAACCAAACC--------------------------AAACTTAT----AAACCCC-----AATATTTTT
Antithamnion_nipponicum      AAATTTATTATATA----TATATGC---TATAATT-----ATG---CACAT----GTGGTTGAAGCC--TTTATTGCTCTCGTCTTTTTCTCTTGCAGTAAACACTTTTGTTGCAGTTTTCACAAGCTCCTATTAGT-GTTTACTGTTTAAGGG-CGAAGATTTGATT----------------------------------GACGCTTTGTGCTCCTGCTTTTGT-----TTGT-GTGCATAAA--TCTATA----CATATATATATAAATATATAT---AT--ATCCCGCGAACGAACTTTTGATTTTT---TTTTTT--TTTCTTAAACCCAAACC--------------------------AAACCT------AAACCCCC---AATTTTTTTT
Antithamnion_sparsum_ASB     AAATTTTT----------GAGTTGCCAT--GGTTATCT--GTATA-CACA--------GTT----CC------TGGCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATTTATCCCGCGAACAAACTT--GATTTTTATTTTTTTT---TTTTTTAAACCAAACC--------------------------AAACTTAT----AAACCCC-----AATATTTTT
Antithamnion_sparsum_ASM     AAATTTTT----------GAGTTGCCAT--GGTTATCT--GTATA-CACA--------GTT----CC------TGGCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATTTATCCCGCGAACAAACTT--GATTTTTATTTTTTTT----TTTTTAAACCAAACC--------------------------AAACTTAT----AAACCCC-----AATATTTTT
Antithamnion_sparsum_ASW     AAATTTTT----------GAGTTGCCAT--GGTTATCT--GTATA-CACA--------GTT----CC------TGGCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATTTATCCCGCGAACAAACTT--GATTTTTATTTTTTTT----TTTTTAAACCAAACC--------------------------AAACTTAT----AAACCCC-----AATATTTTT
Antithamnionella_sp_ATN      -AACTTT-----------GTAT--------GGTATTCTTTGATT--CAATTCTTTTTCTGTTTTTGTTTCAAAGTTCCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTACAT---TTTTTTCACGCGAACCA-CTTG--ATTTATTTTTTTTTT-GAACCTTGAACCCAAAATGTAGGGAGGGGGGAAGTTCCCTTCCCAAACCATAAAATAATTCATTTATGAATTTCTGT
Antithmanion_densum          AAATTTTT----------GAGATGCTAT--GGTTATCT--GTATTACACA--------GTT----CC------TGGCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATTTATCCCGCGAACAAACTT--GATTTTTATTT---TTATTTTTTTTAAACCAAACC--------------------------AAACTTA-----AAACCCC-----AAAATTTTT
Platythamnion_yezoense       -------------TATATGTG--GCGAACAGGCT------GTG----CTTC------GGT---------------GCTGTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGCTTAACATTCTTCACGCGCACTA-CTA---ATTTATAACATTTTT-TTTAATTAAACCTAAAAA------------------CCATTTTCAAACAA--AAACAAATCAT-----AATATTTTT
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = ITS1) = 
		N: 1-398;
CODONPOSSET  CodonPositions (CHARACTERS = ITS1) = 
		N: 1-398;
END;
[ The following blocks are output data for analysis step 2935 ]
BEGIN TREES;
      TITLE Tb7708;
      LINK TAXA = TaxaForAnalysisStep2935;
      TREE ITS1 = [&R] ((((Antithamnion_aglandum,(Antithamnion_nipponicum,Antithamnion_callocladum)),(((Antithamnion_sparsum_ASW,Antithamnion_sparsum_ASB,Antithamnion_sparsum_ASM,Antithamnion_defectum),Antithamnion_kylinii),Antithmanion_densum)),Platythamnion_yezoense),Antithamnionella_sp_ATN);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2403]


END;