#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 19, 2025; 9:44 GMT TreeBASE (cc) 1994-2008 Study reference: Zhang B., Tong Y., Luo K., Zhai Z., Liu X., Shi Z., Zhang D., & Li D. 2021. Identification of GROWTH-REGULATING FACTOR transcription factors in lettuce (Lactuca sativa) genome and functional analysis of LsaGRF5 in leaf size regulation. BMC Plant Biology, 21(485). TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S28704] [ The following blocks are input data for analysis step 29462 ] BEGIN TAXA; TITLE TaxaForAnalysisStep29462; DIMENSIONS NTAX=36; TAXLABELS Arabidopsis_thaliana_GRF1 Arabidopsis_thaliana_GRF2 Arabidopsis_thaliana_GRF3 Arabidopsis_thaliana_GRF4 Arabidopsis_thaliana_GRF5 Arabidopsis_thaliana_GRF6 Arabidopsis_thaliana_GRF7 Arabidopsis_thaliana_GRF8 Arabidopsis_thaliana_GRF9 Lactuca_sativa_GRF1 Lactuca_sativa_GRF10 Lactuca_sativa_GRF11 Lactuca_sativa_GRF12 Lactuca_sativa_GRF13 Lactuca_sativa_GRF14 Lactuca_sativa_GRF15 Lactuca_sativa_GRF2 Lactuca_sativa_GRF3 Lactuca_sativa_GRF4 Lactuca_sativa_GRF5 Lactuca_sativa_GRF6 Lactuca_sativa_GRF7 Lactuca_sativa_GRF8 Lactuca_sativa_GRF9 Oryza_sativa_GRF1 Oryza_sativa_GRF10 Oryza_sativa_GRF11 Oryza_sativa_GRF12 Oryza_sativa_GRF2 Oryza_sativa_GRF3 Oryza_sativa_GRF4 Oryza_sativa_GRF5 Oryza_sativa_GRF6 Oryza_sativa_GRF7 Oryza_sativa_GRF8 Oryza_sativa_GRF9 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M63642] TITLE 'Arabidopsis, lettuce and rice GRF-LSA'; LINK TAXA = TaxaForAnalysisStep29462; DIMENSIONS NCHAR=712; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y *" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana_GRF1 ------------MDLGVRV-SGHETVSSPGQTELGSGFSNKQERSGFDGEDCWR-SSKLSRTST-----DGFSSSPASA--KTLSFHQGIPLLRSTT-INDPRKGQEHMLSFS----------------SASGKSDVSPYLQ------YCRNSG----------YGLGGMMNTSNMHGNLLTGVKGPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKS---------FFPY--------GSLPPNS-----------------------FGWGSFHLGFSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEGQNGHNTNAAAAASAAAASTAAAVSKAAAGTSAVAMRGSDNNNSLAAAVGTQHHTNNQSTDSLANRVQNSRGASVFPATMNLQSKET---HPKQ--SNNPFEFGLISSDSLLNPSHKQASYATSSKGFGS-------------------YLDFG-NQAKHAGNHNNVDSWPEELKSDWTQLSMSIPMAPSSP--------VQDKLALSPLRLSREFDPAIHMGLGVNTEFLDPGKKTNNWIPISWGNNNSMGGPLGEVLN-----------------STTNSPKFGS-------------SPTGVLQKSTFGSLSNSSSASSTIIGDNNNKNGDGKDPLGPTTLMNTSATAPSL------------------------- Arabidopsis_thaliana_GRF2 ------------MDIGVHV-LGSVTSNENESLGLKELIGTKQDRSGFIGEDCLQRSLKLARTTTRAEEEENLSSSVAAAYCKTMSFHQGIPLMRSASPLSSDSRRQEQMLSFSDKPDALDFSKYVGLDNSSNNKNSLSPFLHQIPPPSYFRSSGG---------YGSGGMMMNMSMQGN-FTGVKGPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKS---------FYPY--------GSLPPSS-----------------------FGWGTFHLGFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEVQSGQNQTAAAASKAVTTPQQPVV---AGNTNRSNARASSNR---SLAIGSQYIN--PSTESLP----NNRGVSIYPSTVNLQPKESPVIHQKHRNNNNPFEFGHISSDSLLNP-NTAKTYGSS-------------------------FLDFSSNQEKHSGNHN-HNSWPEELTSDWTQLSMSIPIASSSPSSTHNNNNAQEKTTLSPLRLSRELDLSIQT---DETTIEPTVKKVNTWIPISWG--NSLGGPLGEVLN-----------------STTNSPTFGS-------------SPTGVLQKSTFCSLSNNSSVSS-PIAENNRHNG---DYFHYTT------------------------------------ Arabidopsis_thaliana_GRF3 ------------MDLQLKQWRSQQQQQHQTESEEQ-PSAAKIPKHVFDQIHSHTATSTA---LP-------------------LFTPEP---------------------------------------TSS-KLSSLSPDSS-----SRFPKMG-------------------------------SFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKS---------LLHLSPSYFLHHPLQH--------------------------LPHYQPAWYLGRAAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVETPTTVNATATSMASSVAAAATTTTATTTSTFAFGGGGG-------SEEVVGQGGSFFFSGSSNSSSELLHLSQSCSEMKQESNNMNNKRPYESHIGFSNNRSDGGHILRPFFDDWPRSSLQEADNSSSPMS--------------------------------------------SATC-LSISMPGN-SSSDVS---------------------------------------------LKLSTGNEE---GARSNNNGRDQQNMSWWSGGGSNHHHHNMGGPLAE-------------------------ALRSSS---SSSPTSVLHQLG----VSTQAFH----------------------------------- Arabidopsis_thaliana_GRF4 ------------MDLQLKQWRSQQQN----ESEEQGSAATKISNFFFDQIQSQTATSAAAAPLP-------------------LFVPEP---------------------------------------TSSSSFSCFSPDSSNSSSSSRFLKMG-------------------------------NFFSWAQWQELELQALIYRYMLAGASVPQELLLPIKKS---------LLHQSPMHFLHHPLQHS-------------------------FPHHQPSWYWGRGAMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVETATTT--------------ITTTATTTASSFVLG-----------EELGHGPNNNHFFSSGSSQPLHLSHQQSCSSEMKQESN--NNKRPYEANSGFSNGRSDDGHILRHFFDDWPRS----SDSTSSPMS--------------------------------------------SSTCHLSISMPGNNTSSDVS---------------------------------------------LKLSTGNEEEEENMRNNNNEREQ--MNWWSNGG--NHHNNMGGPLAE-------------------------ALRSAS---STS--SVLHQMG----ISTQVFH----------------------------------- Arabidopsis_thaliana_GRF5 ------------------MMSLSGSSGRTI----------------------------------------------------------G-----------------------------------------------------------------------------------------------RPPFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRS---------LDTSLVSRLLPHQSLGWGC-----------------------YQMG-----FGRKPD-PEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLDQNQTTTTPLTSPSLSFTNNNNPSPTLSSSSSSNSSSTTYSASSSSMDAYSNSNRFGLGGSSSNTRGYFNSHSLDYPYPSTSPKQQQQTLHHASALSLHQNTNSTSQFNVLASATDHKDFRYFQGIGERVG-------------------------------------GVGERTFFPEASRSFQDSPYHHHQQPLATVMN------------------DPYHHCSTDHNKIDHHHTYSSSSSSQHLHHDHDHRQQQCFVLGADMFNKPTRSVLANSSRQDQNQEEDEKD------------------------SSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDTGS--------------------------- Arabidopsis_thaliana_GRF6 --------------------MAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------RIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRP--FLFSSSSSSSSSSSFFSPTLSPHFGW-----------------------NVYEMG---MGRKID-AEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRS------------SSRKPP----------------------PTQFTPNLFLDSSSRR--------------------RRSGYMDDFFSIEPSG------------------SIKSCSGSAMEDNDDG------------------------------------------------SCRGINN----EEKQPDRHCFILGTD-----------------------------LRTRERPLMLEEKLKQRDHDNE------------------------EEQGSKRFYRFLDEWPS-------------------------------SKSSV-STSLFI------------------------------------------------- Arabidopsis_thaliana_GRF7 -------------------------MDFLKVSDKTTIPYRSDSLFSLNQQQYKESSFG----------FRDMEIHPHPTPYAG--------------------------------------------------------------NGLLGCYYY-------------------------------YPFTNAQLKELERQAMIYKYMIASIPVPFDLLVSSPSS---------ASPCNN----------------------------------------------KNIAGDLEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVEPPYSRPNNNGGSVKNRDLKKLPQKLSSSSIKDKTLEPME-------VSSSISNYRDSRGSEKFTVLATTEQENKYLNFIDVWSDGVRSSEKQSTTSTPVSSSNGNLSLYSLDLSMGGNNLMG------------------------------------------------QDEMGLIQMGLGVIGSGSEDHHGYGPYGV----------------------------------TSSLEEMSSWLAPMSTTPGGPLAEILR-------------PSTNLAISGDIESY-------------------------SLMETPTPSSSPSRVMKKMTSSVSDESSQVRICE--------------------------------- Arabidopsis_thaliana_GRF8 -------MRMLLGIPYVDKSVLSNSVLERGKQDKSKLLLVDKCHYELDVEERKEDFVGGFGFGVVENSHKDVMVLPHHHYYPSYSSPSSSSLCYCSAGVSDPMFSVSSNQAYTSSHSGMFTPAGSGSAAVTVADPFFSLSSSGEMRRSMNEDAG-------------------------------AAFSEAQWHELERQRNIYKYMMASVPVPPELLTPFPKN---------HQSNTNPDVDTYRSGMFSIYADYKNLPLSMWMTVTVAVATGGSLQLGIASSASNNTADLEPWRCKRTDGKKWRCSRNVIPDQKYCERHTHKSRPRSRKHVESSHQSSHHNDIRTAKNDTSQLVRTYPQFYGQPISQIPVL-------STLP----------SASSPYDHHRGLRWFTKED--DAIGTLNPETQEAVQLKVGSSRELKRGFDYDLNFRQKEPIV------------------------------------------------DQSFGALQGLLSLNQTPQHNQETRQFVVE----------------------------------GKQDEAMGSSLTLSMAGGGMEETEGTN-------------QHQWVSHEGPSWLY-------------------------STTPGGPLAEALCLGVSNNPSSSTTTSSCSRSSS--------------------------------- Arabidopsis_thaliana_GRF9 ---------------MQSPKMEQEEVEEERMRN------------------------------------------------------------------------------------------------------------------------------------------------------KWPWMKAAQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNS---------LALSSSSNYNYHSSSLLSN-----------------------------KGVTHIDTLETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRKLVESSSEVASSSTKYDNTYGLDRYNESQSHLHGTISGSSNAQVVTIASLPSARSCENVIRPSLVISEFTNKSVSHGRKNMEMSYDDFINEKEASMCVGVVPLQGDESKPSVQKFFPEVSDKCLEAAKFSSNR---------------------------------------KNDIIARSREWKNMNVNGGLFHGIHFSPDTVLQERGCFRLQGVETDNEPGRCRRTDGKKWRCSKDVLSGQKYCDKHMHRGMKKKHPVDTTNSHENAGFSPLTVETAVRSVVPCKDGDDQK-----------------------HSVSVMGITLPRVSDEKSTSSCSTDTTITDTALRGEDDDEEYLSLFSPGV------------------ Lactuca_sativa_GRF1 ----------------------------------------------------------------------------------------------------------------------------------------------------MAATLG-------------------------------FPFTAAQWMELERQAMIYKYMVASVPIPYELLLPIIQN---------LPSLAS-------------------------------------------QLKYSTKQDLEPGRCKRTDGKKWRCSRDVAPNQKYCERHMHRGRPRSRKHVELFKNPTTNNSRIRLPNPTSQLSTHSNHCRVLGSTILPSA-------TEAPLF-----LDSNMHSKTVNNRGLDWSLDVEYEQQWRQIMQTSCSIFNSDFGNFTDFG-TPRRDFITDKTSVVK------------------------------------------------DSSTLDLSMAMGLGLGLGKHERDLGLVSP----------------------------------VSCGTAPGGPLAEVLIPGPSSVAVGSNPTSPYP------TGSDSISVSPAATTV-------------------------SSPCGVLQSQRTMLSLSDGSVCNSPTLASTPTDIVAFQWFT*------------------------- Lactuca_sativa_GRF10 -------------------MSGSKSVAVSG-----------------------------------------------------GGGDWY-----------------------------------------------------------------------------------------------RAPFTAVQWQELEHQALIYKYLVAGVPVPSDLVLPIRRS---------FEALSAKLLH---HPALGY-----------------------TNLSLY---YGKKFD-PEPGRCRRTDGKKWRCSKEAFHESKYCERHMNRGRNRSRKPVESQS------TAKGG------------------SYQNVISTATAKSLNPITT-----------NSGTG--------------SYNFGNNGSKL-------------QLDTIPYGINTKDLRYSQEQTVT------------------------------------VNVDNQNYALKLCGDSNDNDLDNSWSSQVVTDSS------------------HNDSYSNTFEPIPMPMIDDDANNSISMSSSSSSSKQQSQQHFCFFGGEID-QVNHDEQDNSMLP---------------------------------IPWSNLNA*--------------------------------------------------------- Lactuca_sativa_GRF11 ------------MDFHLKQWAHQNQH--------------------------QPDDSSASLALP-------------------LFSSEP---------------------------------------TSS---SSSSKPSK------MMQGVS-------------------------------GYFSVGQWQELEVQALIYRYMLTGSPIPPQLLHLLLNS---------TSNTNPPFYPLSNFPS---------------------------LCQTGGGYWGRGGMDPEPGRCRRTDGKKWRCSRDVVAGHKYCERHIHRGRNRSRKPVEIPTPTTSTATAGSRGGDVDYGVGLVKKPTSVYTT-----------TAAAAGYGGAQTYTGSTNCGGSVSGHSPFFDQLHLNQR-VDDKAAYRSSE--NEDKLSGGRILRPFFNDWPRT-------VQEQET--------------------------------------------LATS-LSISVTGD-ATSDFS---------------------------------------------LKLSTGNDETGPRGEEINGERERASLSWGMQWG-THHAGSLGGPLAE-------------------------ALRSSSTSNTSSPTSVLHQLQRGSTTTSETSYVST*------------------------------- Lactuca_sativa_GRF12 -------------------MSGS-T?GGGG-----------------------------------------------------GGISGY-----------------------------------------------------------------------------------------------RPPFTPVQWQELEHQALIYKYLVAGVPVPYDLVVPIRRS---------LEALSARFFT---NPTS-------------------------LSYCSY---YGKKFD-PEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVESQSQSLSQSQSQSQ------------------SASQPLSTTAVSNVSTVSNGGN----RSYQNLGNGSFQNSSLYPTSSSCSFDFGSNVSKL-------------QVHGSAYGINNNSFRY--DQSLT------------------------------------VDVDDQNYTSNTWR-----LLPNQIPTSSLMES-------------------RTESYLQTKSMVNF----DSVVDPISMSKPSQ--QQQQQQQHCLFGSKIGSPIEVKNEQQSMRPFFDEWPEA------------------------REPWSTTQLSMSTTNDYTARSDCTSNGA*-------------------------------------- Lactuca_sativa_GRF13 -----------MRNDSNRTSGAAGGGGGGGGGGGCGGAVSP---LECDVGLGLNSEPSYPCKKMSLININQYRHHDFGGVYGNNGSQQFVHQGNPTNQLASG------------------------------------ISFKSITDGVVGASGK-------------------------------VLFTATQWQELERQTLIYKYIMASIPIPPQLLLPSSTQ---------SNRTSTG-------------------------------------------IRFSNGSDPEPWRCRRTDGKKWRCAKDVGPNQKYCERHAHKTRSRSRKPVDTTHNPTATSSNQQ----TRCHEWFIKSS------ETPLS-------QSKMDD-------CSLSLSMQSSGNVNG---------NGVEFG-----------DQESFQMAFRMLEGEGGECG----------------------------------------------------------------------DGFRSNHQW----------------------------------LNQAAWEGSNQGSNPSMPGGPLGEALC------------LGMSGVDHMGPNVAS-------------------------SYGSYEGSDDRS---------------WFL*------------------------------------ Lactuca_sativa_GRF14 --------------------METMT--------------------------------------------------------TARNDNS------------------------------------------------------------------------------------------------RFPFTSSQWQELEHQALVYKYMISGMPIPPDLLFSIQR------SLDSSTRLLLHHHSPHHSIGVGW-----------------------NCFQMG---FGRKID-PEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVN--SAPNTPPALSISTK----------PMMNYPVSPFLYPQIQLSSSSSSRAP--------------VNGNVVSSHQDRFWLESSSGYSSR-------------SEKDNSYGMKEEMAEHPFLSER-----------------------------------------CGSGTMSASMGGDSWNLEPLAMNNNNT-----------------------------SSSSSSSSSLMVHTKQRAYYDY-------------DQLTLKINQRKDEQPKKVMHHFFDESPQN------------------------DDVDGGNKDSS-TTQLSISIPNGAR---DFFQTHNRNFNSFFFFPFGVVYLIKTMKSNYSFSMCCR* Lactuca_sativa_GRF15 ------------MDFGVLDGLVSSDNHNKNTLISCGDLDLKPKWFGSGGGFGKQESPISALATG----------------TREDEWRDLKMAKIGEDDISRRSNGAQNMLSFS---------------SPNTQTVTFPYYARHNTVSGYGAGAG-----------------------------AGGPFTPSQWMELEHQALIYKYITANAAIPSNLLIPIRKA---------LESAAFSAYSG-AHLRQNS-----------------------FGWGALHLGFCN-SSDPEPGRCRRTDGKKWRCAKDAVVDQKYCERHMNRGRHRSRKPVEGQTCKLTTSTAVLRHTSSQPVTPNPAATSSEDNMSVVN-------KASFEATVVPMSSPTSVDLKKNQFSIGGTEFGFVCS---------------------------DSLLNPMHKSDLKSQN-------------------------------------------PLHQFMEDSNQGQLSISVSTNSDGFVSS-TTSPTSHSLLRMGLGMG--------------------KMTTNAQHDVSWE--TSMGGPLGEVLN-----------------TSPVGPKLDD-----------------------------GGLGTTIGLGHLL*------------------------------------------------- Lactuca_sativa_GRF2 -----------MGN-GDRSSSRGFNIGGGDDDSGEAPAPAPSAFLESDIAIGINMQHAVSSFNLHNKITNFMPPSSY---YHHN--QLQNHQAS--TEIGGG------------------------------------VVFGSDSGGATEVSGK-------------------------------VLFTATQWQELERQTMIYKYIMASIPVPPQLLIPYSTQ---------SNKGGMD-------------------------------------------MRFSSGSDPEPWRCRRTDGKKWRCSRDVAPDQKYCERHAHKSRPRSRKPVEIQPHNTNITTNALNITPTSYTNTLITSSYQHPSWAIPVS-------VSSSNQQ----FQESLSHSPRVGSKRNHNFPQEHESHNNNNYSNILDTTSTAGVRRQNFIDAWSRSTGGGDNCSLTLS-------------------------------------------MQCSGGIDDDDHNFEIGMLDVEREGKLHNEWL----------------------------------LNQSSWMGSR-----STPGGPLGEALG------------LGIASSTVNGPLSGP-------------------------SFHAHSNSSSTTTSSLCENGDAHGHELSFIR*----------------------------------- Lactuca_sativa_GRF3 ------MSFSNAMDFSMSN-FSENP--NNNHKIHESWFL-NHKRSDPDPHLDQ----RPIKTSR---------PDPYNT-TMSMSMR-----------------------------------------PSFKNENQMSLLSSYHTPPAYIENG--------------------------------GPFTPSQWMELEHQALIYKYLVANVPVPSLLINHIKKS---------LDPFVFSG-SSSTSNAPS-------------------------------LCFPA-NNDPEPGRCRRTDGKKWRCSKEAVPDQKYCEKHINRGRHRSRKLVEGNNG-----APATDG------------GGGINNQFKN---------LQLQPQNGSMNRPEEHKP--------------------------------------------------------------------------------------------------------QWN-------TQLTMSMD-SSSDFSSS-SNS-----------------------------------------IPDSWK--SSMGGPLGEALK-------------TSNGGNSNRHSWCS------------YSPTGVFSR------SNSSSGSS-PRGNQED--GGGDEMLFLTHAVTSASFQSSK*------------------------ Lactuca_sativa_GRF4 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDLEPGRCRRTDGKKWRCRLAVLPDQKYCERHIHRGCLRSRKPVEDHMSKSTAKITVSPLKSTIN-------------------------LTKSDARKDKSVCIKNRNNSFKIKKRSREDDARVPLEFSFSP--------------------KSVLQNDNAQHSGNSRN--------------------------------------------------NHNNHNLVVVPESARCRRTDGKNWR-----------------------------------CTKITLQGQKYCAQHMHRGVKKVQNYQNS----------NTSLSFSVGASYVQK------------------------GSSGNQSNESSDSDDDDDDDGRDPNGATNSSSSDATTISM*-------------------------- Lactuca_sativa_GRF5 -------------------MMSSGSN--------------------------------------------------------------------------------------------------------------------------------------------------------------LNLFTAAQWEELEQQALIYKYMVSGVPVPTHLILSVRRS---------LYNSSFTNPSNQFGVWEGN-----------------------FQYNQLYQIGGRKID-MEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEFPSSSSTATSS---------------SSSTTANVSSSPLTTTTNISKSISPSDHLTYHNTTLHTR--------------SSPIQ-----------------------------TNFIDYRYLQ--DERS-------------------------------------------VFFPQND------PYTSQKMTVNAPS-------------------------SSDHQNYSHFNFQNLKNQQQHKEEDIDFIKSSEETKSSIQIDTKLDEIPNKQTFHHFFAPQKPND------------------------TPSWVDVDHHHHQHQNLINPQKSPLSTQDLFQSKPRSYW*--------------------------- Lactuca_sativa_GRF6 ------------MDFGITP-FHNTQFFNHDEKTNGSGFN-KQERSDPDPPDDQELFLRTSKSSR---------TDYFDQPTKTMSMRSDSLLSVSATDTNNMLSFSSSSSSSS---------------SAIKDANQSSLFSFYQPSPSYIRNTGRILMALLVSGYGYGGLQTGMHMPVS---RYKGPFTPSQWMELEHQALIYKYFVANVPVPSHLLTPLRKS---------LNTFLFPATSSSTSYAPNS-----------------------YGWGAFHLGFSG-NTDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEGQNGQANVSVPAKVGPVVSSSSSVPVSGSRTSTATVT---------AAANHHNPPTNRTQESQPFTAINSSETLMFPTNYNSFMDPV---------------------APSLNPTPTPTPNPNP----------------------------------NPNPLPSFVNEWSKEIKQDWTQLSMSIPMASSDFSSS-SNSPAQEKLVVPPLGLSHEFDL------------DPTHKQASNWIPISWG--NTMGGPLGEVLNRT-----------SSSGVNSKNASSSSEMWDAINNNNLGSSPTGVLQKTTFVSLSNSSSGSS-PKGDKKDDYGGG-----LCDELLLSSFNTC*------------------------- Lactuca_sativa_GRF7 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRQESADEGEEIRSVLKVLAATGKFCHDWEKLRSMLS--------LHLKQVWGVG--------------------------------VVRNCFHMGFGMKID-PEPGRCRRTDGKKWRCYKEAYLDSKYCERHVHRGRNRSRKHVEFIVGLSKPTSGSMY---------------------------------------------------------------------------------------------------------------------------------------------------------------IQRYTENGSSNQPPVVRNCIRS--------------------------------------NVEDVELAAVPCG------------------------------FGNAIGNKGGVG-------------------------LRMRICGQIICFVNYHFVAHLDVVNRCNDCTLSS*------------------------------- Lactuca_sativa_GRF8 -------------------MMSTEGGGGGG---------------------------------------------------SLRNNNGG-----------------------------------------------------------------------------------------------RFPFTASQWQELEHQALVYKYMISGMPIPPDLLYTIKK------SLESSTKLLLHHHQPPHPS-IGW-----------------------NCFQMG---FGRKID-PEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVNLSTHPNSKTPPTPTPI----------PMISSKSPNYPSPNSHPISSYSR--S--------------MGSNVLSS-QDHFLLESNP-------------------YRKSYVGMKEEIDEHSFFSE-------------------------------------------SSGTIKSS---DSWQLEPLAMNNPNS-----------------------------SLAHLKQQTSFSDYHQNGYLQYPHEQHQDQGSYYNHQIGLKIA-RKDE-PQKVMHHFFDEWPPN------------------------DEN---NQDSS-TTQLSISIPSSAH---DFFLTHNDK*----------------------------- Lactuca_sativa_GRF9 ------------MN-GVEGSSSS------------------------------AADSSS-------------------------FLEQN---------------------------------------ANY--MSVLGMNGG----------TG---------------------------------FTFMQMEELKLQALIYKYMEAGLPVPSNLLLPIWNS---------VLAS----FTGS-------------------------------GCDRSLYDNYKNSMEAEPGRCKRTDGKKWRCSKEVVIGYKYCEKHLHRGRSRSRKDVEADSMV-----------------------------------------AATDGRHKNL*---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Oryza_sativa_GRF1 -----------------MMMMSGRP---------------------------------------------------------SGGAGGG-----------------------------------------------------------------------------------------------RYPFTASQWQELEHQALIYKYMASGTPIPSDLILPLRR----SFLLDSALATSPSLAFPPQPS-LGW-----------------------GCFGMG---FGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVEMSLATPPPPSSSATSAASNTSAGVAPTTTTTSSPAPSYSRPAPHDAAPYQALYGG----PYAAATARTPAAAAYHAQVSPFHLQLDTTHP---------------HPPPSYYSMDHKEYAYGHATKEVHGEHAFFSDGTEREH-----HHAAAGHGQWQFKQLGMEPKQSTTPLFPGAGYGHTAASPYAIDLSKEDDDEKERRQ------------QQQQQQQQHCFLLG---ADLRLEKPAGHDH------------------------AAAAQKPLRHFFDEWPHE------------------------KNSKGSWMGLEGETQLSMSIPMAAN---DLPIT-TTSRYHNDD*----------------------- Oryza_sativa_GRF10 ------------MDEEKEADSPQPP-SKLPRLSGADPNAGVVTMAAPPPPVGLGLGLGLGG----------------------DSRGER--------------------------------------DVEASAAAAHKA----------------------------------------------TALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKS---------VAS-SSFGPHRFPSLAV-------------------------MGLGNLCFDYRS-SMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEASAAATP-----------------------------------------ANNG-GGGGIVFSPTS-VLLAH---GTARAT*----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Oryza_sativa_GRF11 ---------MAAEGEAKKDSASNPPGGGGGGGGGEEEEDSSLAVGEAAVGVGEAGGGGGGGEKA-------------------DREEEEGKEDVEEGGVCKDLVLVEDAVPVE--------------DPEEAAATAALQEEMKALVESVPVGAG-------------------------------AAFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKS---------VTGASSEGAQKYPTLM---------------------------GLATLCLDFGK-NPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVEDDEPDSTS--------------------------GSK-------PASGKATEGGKKTDDKSSSSKKLAVAAPAAVEST*----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Oryza_sativa_GRF12 -----------MLAEGRQVYLPPPPPSKLPRLSGTDPTDGVVTMAAPSPLV-LGLGLGLGGSGS-------------------DSSGS---------------------------------------DAEASAATVREARPP-------------------------------------------SALTFMQRQELEQQVLIYRYFAAGAPVPVHLVLPIWKS---------IAAASSFGPQSFPSLT---------------------------GLGSLCFDYRS-SMEPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEASAAVAPTYL-------------------PVRPALHTV-------ATLATSAPSLSHLGFSSASKVLLAHTTTGTTRAT*----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Oryza_sativa_GRF2 -------------------MMAG--------------------------------------------------------------GGSG-----------------------------------------------------------------------------------------------RCLFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLRHR--AAAAAAADVDTVPSLAFPPH-H-LGW-----------------------GCYGAAAAQYGRRVEDPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKPVEM-----PPPAAAAVYRPS----------------ALSIS-PPPHDAD--APSYG---------------AGAG-----APLQLHLDSFHAST-------------SPPPSYH-----RYAH-----------------------------------------------TSSAPLFPSSAAGYGGG----WSLSKE-----------------------------HCLTLGGAAADLSLDKPADHHHD---------------------ATSATTEKPLRRFFDEWPRS------------------------DDGRTPWDG----TQLSISIPTAAAASPDLAIAGAASRYHSNGDHLRTSE*---------------- Oryza_sativa_GRF3 ---------------MAMPFASLSPAADHR-------PSFIFPFCRSSPLSA--------VG--------EEAQQHMMGARWA-AAVAR-----------------------------------------------------------------------------------------------PPPFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRRG---------LDSLASRFYH---HPVLG--------------------------YGSY---FGKKLD-PEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEAQLVAP---HSQPP---------------ATAPAAAVTS-TAFQNHSLYPAIANGGGANGGGGGGGGGGSAPGSFALGSNTQLHMDNAASYS-------------TVAAGAGNKDFRYSAYGVRPLAD------------------------------------EHSPLITGAMDTSIDNSWCLLPSQTSTFSVS------------------------SYPMLGNLSEL-----DQNTICSLP-------KVEREPLSFFGSDYVTVDSGKQENQTLRPFFDEWPKA------------------------RDSWPDLADDNS-LATFSATQLSISIPMATSDFSTTSSRSHNGIYSR*------------------- Oryza_sativa_GRF4 MPPCLRRWPTTARPRQPRPPPSSPSAAPPRSPRKQREPAATTHFLGSSGACDNTVRRCVWVGGCRGGGGVAMGEDAPMTARWPPAAAAR-----------------------------------------------------------------------------------------------LPPFTAAQYEELEQQALIYKYLVAGVPVPPDLVLPIRRG---------LDSLAARFYN---HPALG--------------------------YGPY---FGKKLD-PEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVETQLVA----QSQPPSSVVG---------SAAAPLAAASNGSSFQNHSLYPAIA-------GSNGGGGGRNMPSSFGSALGSQLHMDNAAPYA-------------AVGGGTG-KDLRYTAYGTRSLAD------------------------------------EQSQLITEAINTSIENPWRLLPSQNSPFPLS------------------------SYSQLGALSDL-----GQNTPSSLS-------KVQRQPLSFFGNDYAAVDSVKQENQTLRPFFDEWPKG------------------------RDSWSDLADENANLSSFSGTQLSISIPMASSDFSAASSRSTNGD*---------------------- Oryza_sativa_GRF5 ------------------MLSSSPSAAAPG-----------------------------------------------IGGYQPQRGAA--------------------------------------------------------------------------------------------------VFTAAQWAELEQQALIYKYLVAGVPVPGDLLLPIRPHSSAAATYSFANPAAAPFYHHHHHPSLS--------------------------YYAY---YGKKLD-PEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVESKTAAP---APQSQ------------------PQLSNVTTATHDTDAPLPSLT------------VGAKTHGLSLGGAGSSQFHVD-APSYG-------------SKYSLGAKADVGELSFFSGASGN------------------------------------TRG----FTIDSPTDSSWHSLPSSVPPYPMSKPRDSGLLP------------GAYSYSHLEPSQEL-----GQVTIASLS-------QEQ-ERRSFGGGAGGMLGNVKHENQPLRPFFDEWPGR------------------------RDSWSEMDEERSNQTSFSTTQLSISIPMPRCG-SPIGPRLP*------------------------- Oryza_sativa_GRF6 ------------------------------------------------------------------------------------------------------------------------------------------------MQGAMARVRG--------------------------------PFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRRS---------LTSPYSPAY-----FGSST-----------------------LGWGSFQLGYSG-SADPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEGQPGHAAKAMPAAVAAAAASATQPSAPAAHSGGAVAGLAINHQHQQMKNYAANTANPCSLQYSRDLANKHNESEQVQDSDSLSMLTSISTRNTGSLFPFSKQHNPFEVSNSRPDFGLVSPDSLMSSPHSSLENVNLLTSQSLNEQQSSVSLQHFVDWPRTPAQGALAWPDAEDMQAQRSQLSISAPMASSDLSSASTSPIHEKLMLSPLKLSREYSPIGLGF----AANRDEVNQGEANWMPMFRD--SLMGGPLGEVLTKNNNMEARNCLS---ESLNLLNDGWDS-------SSGFDSSPVGVLQKTTFGSVSSSTGSSPRLENHSVYDGNSNLRDDLGSVVVNHPSIRLV*------------------------- Oryza_sativa_GRF7 --------------------------------------------------------------MA-----------------MATPTTNGSFLLGSG--------------------------------------LDCGSSDVARMQGVLARVRG--------------------------------PFTPTQWMELEHQALIYKHIVANAPVPAGLLLPIRRS---------LHPPVFPHFSSGGILGSSS-----------------------LGWGSFQLGYSG-SADSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEGQSSHAAKATVPAIAQPPIGASNGKLSGSHG---VS-------NELTKTLATN----------RMMLDKANLIERSQD--YTNQQHNILQNNT-------KGDNWSEEMSSQADYAVIPAGSLMNTPQS--ANLNPIPQQ----QRCKQSLFG------------------KGIQHDDIQLSISIPVDNSDLPTNYNKAQMDHVVGG-------------------SSNGG--NNTRASWIPGSWE--ASIGGPLGEFFTNTSSASDDKGKSRHPPSLNLLADGHTT-------SPQLQS-PTGVLQMTSFSSVPSSTVSSP---AGSLCNG------LLTSGLVNAQTVQTL-------------------------- Oryza_sativa_GRF8 ---------------MLSSCGGHGHGNPRSLQEEHHGRCGEQQGGGGGGGQEQEQDGFLVREAR-----------------ASPPSPSSSSFLGSTSSSCSGGGGGGQMLSFS----------------SPNGTAGLGLSSGGSMQGVLARVRG--------------------------------PFTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRRS---------LHP---------------------------------------WGWGSFPP---G-CADVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEGRKATLTIAEPSTVIAAGVSSRGHTVARQKQ---------------VKGSAATVSDPFSRQSNRKFLEKQNVVDQLSP----------------------MDSFDFSSTQSSPNYDNVALSPLK-------------------------------------------------LHHDHDESYIGHGAGSSSEKGS---------------------------------------MMYESRLTVSKE--TLDDGPLGEVFKRKNCQS---------ASTEILTEKWTE-------NPNLHCPSGILQMATKFNSISSGNTVNS---GGTAVENLITDNGYLTARMMNPHIVPTLL*------------------------ Oryza_sativa_GRF9 -----------MFADFSAAAMELGEVLGLQGLTVPSTKEGDLSLIKRAAAGSFTQAAAASYPSP------------------FLDEQKMLRFAK----------------------------------AAHTLPSGLDFGRENEQRFLLSRTKR--------------------------------PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISKS---------FRSSANR-----------------------------------MSWRPLYQGFPNADSDPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVENQSRKTVKETPCAGSLPSSVGQGSFKKAKVNEMKPRSISYWTDSLNRTMANKEKGNKAAEENNGPLLNLTNQQPTLSLFSQLKQQNKPEKFNTAGDSESISSNTMLKPWESSNQQNNKSIPFTK-------------------------------------------------MHDRGCLQSVLQNFSLPKDEKMEFQK-----------------------------------SKDSNVMTVPSTFYSSPEDPRVSCHAP--------------NMAQMQEDSISS-----------------------SWEMPQGGPLGEILTNSKNPDDSIMKPEARPYGWLLNLEDHAM-------------------------- ; END; [ The following blocks are output data for analysis step 29462 ] BEGIN TREES; TITLE 'Arabidopsis, lettuce and rice GRF-LSA'; LINK TAXA = TaxaForAnalysisStep29462; TREE Fig._2 = [&R] ((((Arabidopsis_thaliana_GRF9:0.73094515,Oryza_sativa_GRF11:0.33851055):0.11460968,(Oryza_sativa_GRF12:0.16724827,Oryza_sativa_GRF10:0.07922353):0.20380919):0.04270744,(((Lactuca_sativa_GRF10:0.2908216,Lactuca_sativa_GRF12:0.32668817):0.11178333,(Oryza_sativa_GRF5:0.31575942,(Oryza_sativa_GRF3:0.15299033,Oryza_sativa_GRF4:0.17797225):0.20139854):0.15939818):0.086083,((Arabidopsis_thaliana_GRF5:0.54798301,Lactuca_sativa_GRF5:0.40027007):0.12816784,((Oryza_sativa_GRF2:0.17572432,Oryza_sativa_GRF1:0.28380801):0.28908642,(Arabidopsis_thaliana_GRF6:0.36280608,(Lactuca_sativa_GRF8:0.20924047,Lactuca_sativa_GRF14:0.22154245):0.23226772):0.0636638):0.04827818):0.01810077):0.02293992):0.015969265,(((Lactuca_sativa_GRF4:0.62038624,Lactuca_sativa_GRF9:0.00822242):0.14981561,((Lactuca_sativa_GRF2:0.4340018,Lactuca_sativa_GRF13:0.34532308):0.27838346,(Arabidopsis_thaliana_GRF7:0.66026247,(Arabidopsis_thaliana_GRF8:0.67234332,Lactuca_sativa_GRF1:0.47704129):0.11303514):0.02400434):0.05895213):0.00740879,((Lactuca_sativa_GRF11:0.39593922,(Arabidopsis_thaliana_GRF3:0.13437205,Arabidopsis_thaliana_GRF4:0.14494178):0.23152485):0.30497727,((Oryza_sativa_GRF9:0.73924657,Lactuca_sativa_GRF7:0.61068014):0.02778566,(Lactuca_sativa_GRF15:0.53105636,((Oryza_sativa_GRF8:0.4422092,(Oryza_sativa_GRF7:0.32914397,Oryza_sativa_GRF6:0.33447086):0.07221448):0.10468491,((Arabidopsis_thaliana_GRF1:0.20200583,Arabidopsis_thaliana_GRF2:0.19933556):0.2360268,(Lactuca_sativa_GRF3:0.19100114,Lactuca_sativa_GRF6:0.3306354):0.07512351):0.12906983):0.02240474):0.0995569):0.03319391):0.00971074):0.015969265); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr138031] END;