#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 22:36 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ohkuma M., Saita K., Inoue T., & Kudo T. 2006. Comparison of four protein phylogeny
and detailed analysis based on glycelaldehyde-3-phosphate dehydrogenase sequences
of parabasalian symbionts in termite guts. Molecular Phylogenetics and Evolution,
null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1521]

[ The following blocks are input data for analysis step 2954 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2954;
        DIMENSIONS NTAX=18;
        TAXLABELS
            Devescovina_sp._D75
            Devescovina_sp._D77
            Holomastigotoides_mirabile_02A21
            Hypotrichomonas_acosta
            Monocercomonas_sp.
            Pseudotrichonympha_grassii_06B88
            Spirotrichonympha_leidyi_13A66
            Stephanonympha_sp._St01
            Stephanonympha_sp._St03
            Stephanonympha_sp._St08
            Tetratrichomonas_gallinarum
            Trichomitus_batrachorum_1
            Trichomitus_batrachorum_2
            Trichomonas_vaginalis_1
            Trichomonas_vaginalis_2
            Trichonympha_agilis
            Tritrichomonas_foetus_1
            Tritrichomonas_foetus_2
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1134]

	TITLE Fig1A;
	LINK TAXA = TaxaForAnalysisStep2954;
	DIMENSIONS NCHAR=326;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                            10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      ]
[                                             .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
Devescovina_sp._D75                  GRLVFRAIRKLYPTEVQVVAIHDLCEIKTNVHLLKFDTAHKIWPEPIVQTG-EDTFKVGDGADAWTVKNIGGRLSPSQLPWADLGVDIVLESTGIFKKHAVV-ENGAVKSDGYDGHIIAGAKRVVLSVPSADEIECTLVLGVNNEDLKPDTKNISNASCTTNCLAPVVKVLNEAFGVFNGFMTTVHSYTNDQVVSD-VMHADLRRARAAGQNIIPTSTGAAIALPRVVKGLTPKSLDGISLRVPTLTGSLVDVTLNLKKTVTVQEVNDALIAATNRPELKGILVFSTDPLVSSDIVDNPASSIVDGLSTKVINTEGAAGSLVKVLS
Devescovina_sp._D77                  GRLVFRAVRKLYPKEVQVIAIHDLCDIKTNVHLLKFDTAHNIWPEPIIQTS-GDEFRVGDGPDAWTVKNIGGRLGPSQLPWGELGIDVVLESTGIFKKHAVV-ENGAVKSDGYDGHIIAGAKRVVLSVPSADEIECTLVLGVNDEDLKPDTKNISNASCTTNCLAPVVKVLNEAFGVFNGFMTTVHSYTNDQVVSD-VMHADLRRARAAGQNIIPTSTGAAIALPKVVKGLTPKCLDGISLRV?TLTGSLVDVTLNLKKTVTIEEVNKALTDAASRPELKGVLVFSTDPLVSSDIVDNPASSIVDGLSTKVINTEGAAGSLVKVLS
Holomastigotoides_mirabile_02A21     GRLVFRAVRKLYPTECQIVAIHDLLDIKTNVHLLKYDSAHGQLGESIEITG-PDTFTVGTGPTAWVVKNIVGRIDPWQLPWKELGVDVVLESTGVYKTKANIGADGKVIKDGYDGHIKAGARKVVLSVPAGDEIECTLVLGVNNEDLKPETQHISNASCTTNCLAPVTKIIHQKWKVVNGFMTTVHAYTNDQQVAD-LAHADLRRARAAGQNIIPTSTGAAKALPIVVKGLRPKSLDGISIRVPVITGSLVDTSFNVEGQPTAAEVNQALKEASESGPLKGILSYVTDPIVSSDIINSTFSSIVDSLETKVIPHPNG-GAIVKVLS
Hypotrichomonas_acosta               GRLVFRAVRELYPNECQVVAVHDLSNVAVNAHLLKYDTAHGIFPEKIERTG-NNVFTVGEGPNMWTINSMEGSDGPSKLPWKELGVDVVLESTGVFRKK------GTDTKEGYYGHIKAGAKKVILSAPADDDIESTLVLGVNDSDLKPETQCISNASCTTNALGPVAQTIMEHFKITNGFMTTVHAYTNDQVVHD-GVHSDPRRARSACQNIVPTSTGIAKALPKVVRSLPSQSFNGISFRVPVVTGSLIDLTVLVEKKCTRDEVNAALKTATLSGPLKGIMDYSEEPLVSSDIIHNQFSCVVDGLSTQVMDTKD--GSLIKILA
Monocercomonas_sp.                   GRLVFRAVRRLYPTECQIVAIHDLCDIKTNVHLLKYDTAHRSFGEKIEITG-ADTFTVGEGSNVWTVKCIGGRLGPSELPWGELGVDVVLESTGIFRRHLTKKADGSVDKDGYDGHIVSGAKRVVLSVPSADEIECTLVLGVNDEDFTAAVKCVSNASCTTNCLAPVTKVINDQFKVLNGFMTTVHSYTNDQVVSD-VMHADLRRARAAAMNIIPTSTGAAIALPRVVKALPPKSMDGLSLRVPTITGSLVDVTFNVEKAVTKEEVNNALKAACETPALKGIMKFTMDPIVSSDIIDDNHSSIVDGLSTMVLPNPKG-GSLVKVLS
Pseudotrichonympha_grassii_06B88     GRLVFRAIRELYPVECKVVAIHDLCPIKTNIHLLKYDSAHGVFKEDIVLGADGKSFIVGTGANQWVVQNLDEKVGPAGLPWKELGVDFVLESTGFFKTKAKVGPDGKVTSDGYDGHIIAGAKKVILSVPASDDIQCTLVCGVNDEDLKPEITTISNASCTTNCLGPVAKVINDAFKIKNGFMTTVHSYTNDQKVAD-NMHSDLRRARAAAINIIPTSTGAAIALPIVVKGLPPKSLDGIALRVPTITGSLVDLTVNVEATVTKDDVNKAVEAASKTNALKGILKYVTDPIVSTDIIHDPHSSVFDSQLTKVIPNKDG-GSLVKVLS
Spirotrichonympha_leidyi_13A66       GRLVFRAVRKLYPTECQVVAIHDLFAIDVNIHLLKYDSAHGTWPEPITKID-NEHFQVGEGPTAWKVENMVGRIHPKDLKWGEKKVDVVLESTGVYKTKAQKGPDGKVTRDGYDGHIAAGAKKVVLSVPAGDEIECTLVLGVNDEDVKPTTTMISNASCTTNCLAPITKIINSKWKIITGFMTTVHAYTNDQQVAD-LAHQDMRRARAAAQNIIPTSTGAAKALPIVVHDLRPKSLDGISIRVPVITGSLVDTSFNVEGTPTRDEINAALKAATLEGPLKGILGYTEDAIVSSDIINCTLSSIVDSLETKVIPNPDGKSALVKVLS
Stephanonympha_sp._St01              GRLVFRACRKLYPTEVQVVAIHDLCDLKTNIHLLKFDTAHKIWPESIVQTA-DDEFQIGDGPGAWTVKSIGGRLGPSQLPWAELGVDVVLESTGIFRKKAVI-EDGKVKADGYDGHIVSGAKKVVLSVPSADEIECTLVLGVNNEDLTPATKCISNASCTTNCLAPLVKVLNEAFGVINGFMTTTHSYTNDQVVSD-VMHADLRRARAAAQNIIPTSTGAAIALPRVVKGLTPKSLDGLSLRVPTLTGSLVDVSLNLKKVVTIQEVNDALIAATKTPELQGILVFSTDPLVSSDIVDNPASSIVDGLSTKVITTPGLPGSLVKVLS
Stephanonympha_sp._St03              GRLVFRACRKLYPTEVQVVAIHDLCDLKTNIHLLKFDTAHKIWPEPIVKTA-DDEFQIGDGPDAWKVKSIGGRLGPSQLPWADLGVDVVLESTGIFKKKAVL-EDGKVKSDGYDGHIISGAKKVVLSVPSADEIECTLVLGVNNEDLTPATKCISNASCTTNCLAPLVKVLNEAFGVINGFMTTTHSYTNDQVVSD-VMHADLRRARAAAQNIIPTSTGAAIALPRVVKGLTPKSLDGISLRVPTLAGSLVDVSLNLKKVVTIQEVNDALIAATKTPELQGILVFSTDPLVSSDIVDNPASSIVDGLSTKVITTPGLPGSLVKVLS
Stephanonympha_sp._St08              GRLVFRACRKLYPSEVQVVAIHDLCDLKTNIHLLKFDTAHKIWPEPIVKTA-EDEFQIGEGPDAWTVKSIGGRLGPSQLPWAELGVDVVLESTGTFRKKAVV-EDGQVKSDGYDGHIISGAKKVVLSVPSADEIECTLVLGVNNEDLTPATKCISNASCTTNCLAPLVKVLNEAFGVINGFMTTTHSYTNDQVVSD-VMHADLRRARAAAQNIIPTSTGAAIALPRVVKGLTPKSLDGLSLRVPTLTGSLVDVSLNLKKVVTIQEVNDALIAATRTPELQGILIFSTDPLVSSDIVDNPASSIVDGLSTKVITTPGLPGSLVKVLS
Tetratrichomonas_gallinarum          GRLVFRAVRALYPRDCQVVAIHDLCDLKTNAYLLRYDSAHRTFQEEITVNEQESTLTIGTGDDKWVVKSLGGRLNPSQLPWKEMGIDVVLESTGIFRSKAVV-EDGKVVKDGYDGHILAGAKKVVLSVPSADEIECTLVLGVNDEDLKPETKCISNASCTTNCLGPVAKTLNNAFGIVSGFMTTVHSYTNDQVVAD-TMHKDLRRARAAGMNIIPTSTGAAIALPKVCHGLPKGSLDGFALRVPTITGSLVDLTVNVKAICTKEEVNAALKKATEEGSLKGIMTYVTDPIVSTDIIGCQYSSIVDSLSTKVLKNPEGFGTLVKVLS
Trichomitus_batrachorum_1            GRLAFRAVRERYAKEIQIVAIHDIGDIKTNTHLLKYDSAHGKFTEEIKILS-NDTFTVGTGDNLWTVKSLEGRTPPSQLPWGEMQIDIVLESTGAFRRKLVLAPDGSVQNDGYDGHIRAGAKKVLLSVPSLDEIDGVIVVGVSTNDLRKEMKCISAASCTTNCLAPIVKVLMEQFEVVCGFLTTVHAFTNDQIVADRTKHKDLRRARSAGINMIPTSTRAKFVLPKVIPGLKPGSMDGLSIRVPIITGSLVEVTAVVKKSCTVAEVNGALRAATQSGPLVGILDYTEDPIVSTDIRSNPFSSIIDSISTKAIQIPTG-GTLVKVLS
Trichomitus_batrachorum_2            GRLVFRAIRERYAKDCQVVAIHDLCDLRTNVHLLKYDSAHGRFQDELKIIA-DDAFTVGSGADMWTVKSVGGRIGPSQLPWAELKVDVVLESTGIFRTKMVLKADGSVEKDGYDGHLKAGAKKVVLSVPSADEIECTLVLGVNNEDLKKETSCISNASCTTNCLAPVAKTLMEHFEIINGFMTTVHSYTNDQVVAD-TVHKDLRRARSAAVNMIPTSTGAAIALPKVVHALPPKSMDGLSIRVPTVTGSIVDVTVNVKKACTVAEVNAALKAATESGPLVGIMKYTEDPIVSTDIISDPYSSIVDSQCTKVIPNPAG-GSLVKVLS
Trichomonas_vaginalis_1              GRLVFRACRKLYPKDIQVVAIHDLGDIKTNVYLLKYDTAHRAFPEPVTVDEAKQEFTVGEGADKWVVKSIGGRLGPSQLPWKELGIDVVLESTGIFRTKAEKDAEGKIKKDGYDGHLVSGAKKVVLSVPSADEIECTLVLGVNDEDLKPETKCISNASCTTNCLGPVAKTLNNAFGIRNGFMTTVHSYTNDQVVAD-TMHKDLRRARAAGMNIIPTSTGAAIALPKVCHGLPPKSLDGFALRVPTITGSLVDLTVNVNAKVTKEEVNAALKKATEEGSLKGIMTYVTDPIVSSDIIGCQYSSIVDALSTKVLPNPEGQGTLVKVLS
Trichomonas_vaginalis_2              GRLVFRACRKLYPKDVQVVAIHDLGDIKTNVYLLKYDTAHRAFPEPVTVDEEKQEFTVGEGDDKWVVKSIGGRLGPSQLPWKELGIDVVLESTGIFRSKAEV-VDGKVTKDGYDGHIISGAKKVVLSVPSADEIECTLVLGVNDEDLKPETKCISNASCTTNCLGPVAKTLNNAFGIRNGFMTTVHSYTNDQVVAD-TMHKDLRRARAAGMNIIPTSTGAAIALPKVCHGLPPKSLDGFALRVPTITGSLVDLTVNVNAKVTKEEVNAALKKATEEGSLKGIMTYVTDPIVSSDIIGCQYSSIVDALSTKVLPNPEGQGTLVKVLS
Trichonympha_agilis                  GRLVFRAIFELYPTECQVVAIHDLCPIKTNVHLLKYDSAHGRFKGDVKIGSDEKSFICSSGSTSWTVQNLSEKVGPSELPWADLGVDFVLESTGFYKTAYKADASGKVTTDGYDGHIKAGAKKVVLSVPASDAIQCTLVCGVNDEDLTPAVTCISNASCTTNCLGPVAKVINDNFHITSGFMTTVHSYTNDQKVAD-LMHSDLRRARAAAINIIPTSTGAAKALPIVVKALPPKCLDGLALRVPTITGSLVDLSVNVKEVVTVDQVNAALKAASEDGPLKGILKYTEDEIVSTDIIHDPHSSILDSKLTKVIPNTSGNGTLVKVLS
Tritrichomonas_foetus_1              GRLVFRAVRTLYPTECQVVAIHDLCDIKTNVHLLNYDSAHRKFPEVVRVTG-EDTFEVGEGANKWVVKNIGGRLGPSQLPWKELNVDVVLESTGIFRTHCVKEGD-NVTKDGYDGHIVAGAKKVVLSVPSADEIECTLVLGVNDEDLKPDTTCISNASCTTNCLAPVVKTINDKFGVKNGFMTTVHSYTNDQVVSD-VMHKDLRRARAAAMNIIPTTTGAAIALPRVVKALAKGSMDGLSLRVPTITGSLVDVTVNTREAVTKEQVNEALKAAAETPALKGILRYTTDPIVSSDIIDDNHSSIVDGLSTMVLPNPDG-GSLVKVLS
Tritrichomonas_foetus_2              GRLVFRAVRDLYPKECQIVAVHDLCDIATNVHLLNYDSAHQRFPEQLTVTA-EDTFEVGTGSDKWVVKNLTGRLGPSQLPWKELDVDVVLESTGLFRTHCVKGEDGSVTKDGYDGHLLAGAKKVVLSVPSADEIECTLVLGVNDEDLKPDTNCISNASCTTNCLAPVIKVLNDTFGIRNGYMTTVHAYTNDQVVSD-IMHKDLRRARAAAMNIIPTSTGAAIALTRVVKNLTRGCMDGLALRVPAITGSLVDITVNTREKVTKDQVNQALKAASESEALRGILGYTDEPIVSSDIIGDRHSSIVDSLSTMVLDNEKG-GSLVKVLS
;
END;

[ The following blocks are output data for analysis step 2954 ]
BEGIN TREES;
      TITLE Tb7727;
      LINK TAXA = TaxaForAnalysisStep2954;
      TREE Fig._1A = [&R] (Pseudotrichonympha_grassii_06B88,Trichonympha_agilis,((((Monocercomonas_sp.,(Tritrichomonas_foetus_1,Tritrichomonas_foetus_2)),((Stephanonympha_sp._St03,(Stephanonympha_sp._St08,Stephanonympha_sp._St01)),(Devescovina_sp._D77,Devescovina_sp._D75))),((Hypotrichomonas_acosta,(Trichomitus_batrachorum_2,Trichomitus_batrachorum_1)),(Tetratrichomonas_gallinarum,(Trichomonas_vaginalis_1,Trichomonas_vaginalis_2)))),(Spirotrichonympha_leidyi_13A66,Holomastigotoides_mirabile_02A21)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4586]


END;