#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 09, 2025; 22:34 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ohkuma M., Saita K., Inoue T., & Kudo T. 2006. Comparison of four protein phylogeny
and detailed analysis based on glycelaldehyde-3-phosphate dehydrogenase sequences
of parabasalian symbionts in termite guts. Molecular Phylogenetics and Evolution,
null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1521]

[ The following blocks are input data for analysis step 2958 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2958;
        DIMENSIONS NTAX=19;
        TAXLABELS
            Devescovina_sp._D14
            Devescovina_sp._D16
            Holomastigotoides_mirabile_04A74
            Hypotrichomonas_acosta_2
            Hypotrichomonas_acosta_3
            Monocercomonas_sp._1
            Monocercomonas_sp._2
            Pseudotrichonympha_grassii_02A38
            Spirotrichonympha_leidyi_Sp28
            Stephanonympha_sp._St19
            Stephanonympha_sp._St20
            Tetratrichomonas_gallinarum_1
            Tetratrichomonas_gallinarum_2
            Tetratrichomonas_gallinarum_3
            Trichomitus_batrachorum_1
            Trichomitus_batrachorum_2
            Trichomonas_vaginalis
            Trichonympha_agilis
            Tritrichomonas_foetus
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1129]

	TITLE Fig2C;
	LINK TAXA = TaxaForAnalysisStep2958;
	DIMENSIONS NCHAR=380;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                            10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380]
[                                             .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
Devescovina_sp._D14                  IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCALRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMASTFIGNTTAFRELFTRVDNQFSKMYARRAFI
Devescovina_sp._D16                  IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGFGTLLLNKLREEYPDRILSTYTIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCALRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMASTFIGNTTAFRELFTRVDNQFSKMYARRAFI
Holomastigotoides_mirabile_04A74     IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLCHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSVVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVTMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICEFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDAQFQKMYARRAFI
Hypotrichomonas_acosta_2             IGAKFWEVVSDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVVRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGRLNSDLRKLAVNLVPFPRLHFSIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSSITDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI
Hypotrichomonas_acosta_3             IGAKFWEVVSDEHGIDPTGSYHGDSDLQLERINVYYNEATSGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVVRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSSITDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI
Monocercomonas_sp._1                 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI
Monocercomonas_sp._2                 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDHILFTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI
Pseudotrichonympha_grassii_02A38     IGAKFWEVVSDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQFGQLFRPDNFVFGQSGAGNNWAKGFYTEGQELCESILDVVRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKCSITDIPPRGLKMAATFIGNSTSFRELFTRVDSQFTKMYARRAFI
Spirotrichonympha_leidyi_Sp28        IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYFNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLTHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSVVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVTMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDAQFQKMYARRAFI
Stephanonympha_sp._St19              IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQEPCESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFSKMYARRAFI
Stephanonympha_sp._St20              IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFSKMYARRAFI
Tetratrichomonas_gallinarum_1        IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYFNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILCTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICLRTLKLTTPTYGDLNHLVSMVMSGSTCSLRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTCSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKCAICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARKAFI
Tetratrichomonas_gallinarum_2        IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYFNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILCTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGSTCSLRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTCSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKCAICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARKAFI
Tetratrichomonas_gallinarum_3        IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYFNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNLVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILCTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGSTCSLRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTCSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKCAICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARKAFI
Trichomitus_batrachorum_1            -------VISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCALRFPGQLNSDLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDGQLQKMYARRAFI
Trichomitus_batrachorum_2            IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSDTTCALRFPGQLNSDLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDGQFQKMYARRAFI
Trichomonas_vaginalis                IGAKFWEVISDEHGIDPTGSYHRDSDLQLERINVYYNEATGAKYVPRAILVDLEPGTSESVRAGQFGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDCLQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCALRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRVSYLT-SAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSAICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI
Trichonympha_agilis                  IGAKFWEVVSDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGFYTEGQELAESILDVVRKEAESCDSLQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNAD?RKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSITDIPPRGLKMAATFIGNSTSFRELFTRVDSQFQKMYARRAFI
Tritrichomonas_foetus                IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI
;
END;

[ The following blocks are output data for analysis step 2958 ]
BEGIN TREES;
      TITLE Tb7731;
      LINK TAXA = TaxaForAnalysisStep2958;
      TREE Fig._2C = [&R] (Pseudotrichonympha_grassii_02A38,Trichonympha_agilis,((Hypotrichomonas_acosta_2,Hypotrichomonas_acosta_3),(((((Devescovina_sp._D16,Devescovina_sp._D14),(Stephanonympha_sp._St19,Stephanonympha_sp._St20)),((Trichomitus_batrachorum_1,Trichomitus_batrachorum_2),(Holomastigotoides_mirabile_04A74,Spirotrichonympha_leidyi_Sp28))),(Tritrichomonas_foetus,(Monocercomonas_sp._2,Monocercomonas_sp._1))),(Trichomonas_vaginalis,(Tetratrichomonas_gallinarum_3,(Tetratrichomonas_gallinarum_1,Tetratrichomonas_gallinarum_2))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4590]


END;