#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 06, 2026; 10:26 GMT TreeBASE (cc) 1994-2008 Study reference: Savchenko A., Zamora J., Shirouzu T., Spirin V., Malysheva V.F., Kõljalg U., & Miettinen O. 2021. Revision of Cerinomyces (Dacrymycetes, Basidiomycota) with notes on morphologically and historically related taxa. Studies in Mycology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S28930] [ The following blocks are input data for analysis step 29803 ] BEGIN TAXA; TITLE TaxaForAnalysisStep29803; DIMENSIONS NTAX=12; TAXLABELS 'Cerinomyces atrans GB_0071217_CAN_BC' 'Cerinomyces atrans GB_0071218_CAN_BC_Holotype' 'Cerinomyces atrans GB_0180499_CAN' Cerinomyces_atrans_TUFC30545 'Cerinomyces colombianus O_F_919450_COL_Holotype' 'Cerinomyces pallidus GB_0071214_USA_Original' 'Cerinomyces pallidus NY_C_pallidus_1_USA' 'Cerinomyces pallidus WBC_39924_USA' 'Cerinomyces paulistanum O_Ryvarden_24759_BRA_Holotype' 'Cerinomyces paulistanum TAAM192120_BRA' 'Cerinomyces ramosissimus CFMR_FP_150848_BLZ_Holotype' 'Cerinomyces verecundus PDD93708_NZL_Holotype' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M61314] TITLE Cerinomyces_pallidus_subclade; LINK TAXA = TaxaForAnalysisStep29803; DIMENSIONS NCHAR=382; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Cerinomyces atrans GB_0071217_CAN_BC' GATCATTATTGGATTCAGAAGCTTACACTGTGAAC{CT}GTCGCCGC{AG}{AG}GGCGCATATATACACTGTCATGAATGTCATTA{AT}ACAAA{CT}AAAACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATCAGTGAATCATCGAATGTTTGAACGCACCTTGCGCTCTCCTTTGGGAAGAGCATGCCTGTCTGAGTGCCGATTCTTGCTTGCTATGGCTTAGGCTGT?GCAGAT?TGGGTGTTGCTTATGCTCGCCTCAAATGGATTAGTGTGTCTTGAACTCGACGTGATAAGTCATCGTTG{AG}GGTAAGGGATTGCGCTTCGAATCACCTACA{GT}TGTAAGTA 'Cerinomyces atrans GB_0071218_CAN_BC_Holotype' GATCATTATTGGATTCAGAAGCTTACACTGTGAACTGTCGCCG{CT}{AG}AGGCGCATATATACACTGTCATGAATGTCATTATACAAA{CT}AAAACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATCAGTGAATCATCGAATGTTTGAACGCACCTTGCGCTCTCCTTTGGGAAGAGCATGCCTGTCTGAGTGCCGATTCTTGCTTGCTATGGCTTAGGCTGTAGCAGA{CT}{AT}TGGGTGTTGCTTATGCTCGCCTCAAATGGATTAGTGTGTCTTGAACTCGACGTGATAAGTCATCGTTGAGGTAAGGGATTGCGCTTCGAATCACCTACAT-------- 'Cerinomyces atrans GB_0180499_CAN' GATCATTATTGGATTCAGAAGCTTACACTGTGAAC{CT}GTCGCCG{CT}{AGT}AGGCGCATATATACACTGTCATGAATGTCATTATACAAATAAAACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATCAGTGAATCATCGAATGTTTGAACGCACCTTGCGCTCTCCTTTGGGAAGAGCATGCCTGTCTGAGTGCCGATTCTTGCTTGCTATGGCTTAGGCTGT{ACT}GCAGA{CT}{AT}TGGGTGTTGCTTATGCTCGCCTCAAATGGATTAGTGTGTCTTGAACTCGACGTGATAAGTCATCGTTGAGGTAAGGGATTGCGCTTCGAATCACCTAC{AT}{GT}TGTAAGTA Cerinomyces_atrans_TUFC30545 GATCATTATTGGATTCAGAAGCTTACACTGTGAACTGTCGCCGCGAGGCGCATATATACACTGTCATGAATGTCATTATACAAATAAAACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATCAGTGAATCATCGAATGTTTGAACGCACCTTGCGCTCTCCTTTGGGAAGAGCATGCCTGTCTGAGTGCCGATTCTTGCTTGCTATGGCTTAGGCTGTAGCAGACTTGGGTGTTGCTTATGCTCGCCTCAAATGGATTAGTGTGTCTTGAACTCGACGTGATAAGTCATCGTTGAGGTAAGGGATTGCGCTTCGAATCACCTACATTGTAAGTA 'Cerinomyces colombianus O_F_919450_COL_Holotype' GATCATTATTGGATTCAGACGCTTACACTGTGAACTGTCGCCGAGAGGCGGATATATAC{AG}CTGTCATGAATGTCAATACACAAACAAAACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATCAGTGAATCATCGAATGTTTGAACGCACCTTGCGCTCTCCTTTGGGAAGAGCATGCCTGTCTGAGTGCCGATTCTTGGTTGCTATGGCTTT{AG}G{CT}{CT}GTAGCAGATATGGGTGTTGCTTATGCTCGCCTTAAATGGATTAGTGTGTCTTGAACTCAGCGTGATAAGTGATCGTTGGGGTAAGGGGCTACGCTTCGAATCGTTGACATTGTAAGTA 'Cerinomyces pallidus GB_0071214_USA_Original' GATCATTATTGGATTCAGACGAATACACTGTGAACTGTCGCCGGAAGGCG{CT}ATATATA{CT}{AG}CTGTCATGA{AG}{AT}GT{CG}{AG}{CT}TA{AC}{AC}{AC}AAA{CT}A{AC}AACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATG{CT}GATAAGTAATGTGAAT{AT}GCAGATCAGTGAATCATCGAA{AT}GTTTGAACGCACC{CT}{CT}GCGCTCTCCTTT{GT}GGAAGAGCA{CT}GCCTGTCTGAGTGCCG{AC}{GT}{AT}CTTGCT{CT}GCTATGGCG{CT}T{GT}GT{CGT}{GT}{CT}A{GT}{AC}{AG}{CG}ATATG{GT}GTGT{AGT}GCG{CT}{AG}T{AG}CTC{GT}C{AC}{CT}{CT}AAAT{AG}{GT}A{GT}{AT}AG{AT}GTG{CT}{CT}TTGAACTCAGCGTGATAAGTCATCGTTGGGGTAAGAG{AG}{CT}{AT}ACGCTTC{CT}AATCG{AT}{CT}GACATTGTAAGTA 'Cerinomyces pallidus NY_C_pallidus_1_USA' GATCATTATTGGATTC{AT}GACGAATACACTGTGAACTGTCGCCG{CG}AAGGCGCATATATAC{AG}CTGTCATGAATGTCATTA{AC}{AC}{AC}AAACAAAACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATCAGTGAATCATCGAATGTTTGAACGCACCTTGCGCTCTCCTTTGGGAAGAGCATGCCTGTCTGAGTGCCGATTCTTG{CG}TTGCTATGGCGTTGGT{CT}GTAGCAGAT{AG}TGGGTGTTGCGTATGCTCGCCTTAAATGGATTAGTGTGC{CT}TTGAACTCAGCGTGATAAGTCATCGTTGGGGTAAGAGGCTACGCTTCTAATCGTTGACATTGTAAGTA 'Cerinomyces pallidus WBC_39924_USA' GATCATTATTGGATTCAGACGAATACACTGTGAACTGTCGCCG{CG}AAGGCG{CT}ATATATACACTGT{CT}ATGAATGTC{AG}T{CT}A{AC}{AC}{AC}AAACA{AC}AACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATCAGTGAATCATCGAATGTTTGAACGCACCTTGCGCTCTCCTTTGGGAAGAGCATGCCTGTCTGAGTGCCGATTCTTGCTTGCTATGGCGTT{CGT}GT{CT}GTAGC{AT}GAT{AG}TGGGTGTTGCGTATGCTCGCCTTAAATGGATTAGTGTGCTTTGAACTCAGCGTGATAAGTCATCGTTGGGGTAAGAGGCTACGCTTCTAATCGTTGACATTGTAAGTA 'Cerinomyces paulistanum O_Ryvarden_24759_BRA_Holotype' GATCATTAAAGGATTCAGACTTATACACTGTGAACTGTCGCCG{CG}AAGGCG{CT}ATAT{AC}TACACTGTCA{CT}GAATGTC{AT}{ACT}TACAAATACATAACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATCAGTGAATCATCGAATGTTTGAACGCACCTTGCGCTCTCCTTTGGGAAGAGCATGCCTGTCTGAGTGCCGATTCTTGCTTGCTAT{AG}GC{CT}TTGGTTGTAGCAGATATGGG{CT}GTTGCG{CT}ATGCTCGCCT{AT}AAATGGATTAGTGTGTCTTGAACTCAGCGTGATAAGTCATCGTTGGG{AG}TAAGAGGCTACGCTTCTAATC{AG}TTGAC{AT}TGGTAAGTA 'Cerinomyces paulistanum TAAM192120_BRA' GATCATTAAAGGATTCAGACTTATACACTGTGAACTGTCGCCG{CG}AAGGCGTATATC{AT}ACACTGTC{AG}{CT}GAATGTCATTACAAATACATAACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATCAGTGAATCATCGAATGTTTGAACGCACCTTGCGCTCTCCTTTGGGAAGAGCATGCCTGTCTGAGTGCCGATTCTTGCTTGCTAT{AG}GC{CT}TTGGTTGTAGCAGATATGGGTGTTGCGTATGCTCGCCT{GT}AAATGGATTAGTGTGTCTTGAACTCAGCGTGATAAGTCATCGTTGGGGTAAGAGGCTACGCTTCTAATCATTGACTTGGTAAGTA 'Cerinomyces ramosissimus CFMR_FP_150848_BLZ_Holotype' GATCATTATTGGATTCAGAAGTATACACTGTGAACTGTCGCCGGAAGGCGTATAACTACACTGTCGTGAATGTAATGTTTGAAACAAAACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATCAGTGAATCATCGAATGTTTGAACGCACCTTGCGCTCTCCCTTGGGAAGAGCATGCCTGTCTGAGTGCCGATTCTTGCTTGTTGCAGCTGCTGTTTGA-CAGAGATGGGTGTTGCTTATGCTCGCCTTAAATGGATTAGTGTGTCTTGAACTCGGCGTGATAAGTGATCGCTGGGGTAAGAGATTGCGCTTCGAATGACTG------TAAGTA 'Cerinomyces verecundus PDD93708_NZL_Holotype' GATCATTATTGGATTCAGAAGCTTACACTGTGAACTGTCGCCGG{AG}AGGCGCATATATACACTGTCATGAATGTCATTA{AT}ACAAA{CT}AAAACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATCAGTGAATCATCGAATGTTTGAACGCACCTTGCGCTCTCCTTT{GT}GGAAGAGCATGCCTGTCTGAGTGCCGATTCTTGCTTGCTATGGCTTAGGCTGT{AC}GCAGACTTGGGTGTTGCTTATGCTCGCCT{CT}AAAT{GT}{AG}ATTAGTGTGTCTTGAAC{CT}{CT}GACGTGATAAGTCATCGTTGGGGTAAGGGATTGCGCTTCGAA{CT}{CG}ACCTACA{CT}TGTAAGTA ; END; BEGIN SETS; CHARSET ITS2 (CHARACTERS = Cerinomyces_pallidus_subclade) = 240-382; CHARSET 5.8S (CHARACTERS = Cerinomyces_pallidus_subclade) = 91-239; CHARSET ITS1 (CHARACTERS = Cerinomyces_pallidus_subclade) = 1-90; END; BEGIN CODONS; CODONPOSSET * UNTITLED (CHARACTERS = Cerinomyces_pallidus_subclade) = 1: 1-382\3, 2: 2-380\3, 3: 3-381\3; CODONPOSSET CodonPositions (CHARACTERS = Cerinomyces_pallidus_subclade) = 1: 1-382\3, 2: 2-380\3, 3: 3-381\3; CODONPOSSET CodonPositions (CHARACTERS = Cerinomyces_pallidus_subclade) = 1: 1-382\3, 2: 2-380\3, 3: 3-381\3; END; [ The following blocks are output data for analysis step 29803 ] BEGIN TREES; TITLE Cerinomyces_pallidus_subclade_BI; LINK TAXA = TaxaForAnalysisStep29803; TREE cer0_pal_BI = [&R] ('Cerinomyces ramosissimus CFMR_FP_150848_BLZ_Holotype':0.03509594,(('Cerinomyces verecundus PDD93708_NZL_Holotype':0.001783507,('Cerinomyces atrans GB_0071217_CAN_BC':0.002729584,'Cerinomyces atrans GB_0071218_CAN_BC_Holotype':0.001609105,'Cerinomyces atrans GB_0180499_CAN':0.001397667,Cerinomyces_atrans_TUFC30545:0.001523343):0.00647597):0.0231707,('Cerinomyces colombianus O_F_919450_COL_Holotype':0.01477729,(('Cerinomyces paulistanum O_Ryvarden_24759_BRA_Holotype':0.001372627,'Cerinomyces paulistanum TAAM192120_BRA':0.002026862):0.02658606,('Cerinomyces pallidus GB_0071214_USA_Original':0.001631676,'Cerinomyces pallidus NY_C_pallidus_1_USA':0.001623796,'Cerinomyces pallidus WBC_39924_USA':0.002027804):0.009052292):0.01423884):0.02138723):0.03509594); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr134229] END;