#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on November 05, 2025; 11:21 GMT

TreeBASE (cc) 1994-2008

Study reference:
Simpson B., Larkin L., Weeks A., & Mcdill J. 2006. Phylogeny and biogeography of
Pomaria (Caesalpinioideae: Leguminosae). Systematic Botany, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1547]

[ The following blocks are input data for analysis step 3000 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep3000;
        DIMENSIONS NTAX=23;
        TAXLABELS
            Caesalpinia_epunctata
            Caesalpinia_gilliesii
            Caesalpinia_mexicana
            Caesalpinia_mimosifolia
            Caesalpinia_pannosa
            Caesalpinia_trichocarpa
            'Hoffmannseggia burchellii ssp. rubro-violacea'
            Pomaria_austrotexana
            Pomaria_brachycarpa
            Pomaria_burchellii
            Pomaria_canescens
            Pomaria_fruticosa
            Pomaria_glandulosa
            Pomaria_jamesii
            Pomaria_lactea
            Pomaria_melanosticta
            Pomaria_multijuga
            Pomaria_pilosa
            Pomaria_rubicunda
            Pomaria_rubicunda_var._hauthallii
            Pomaria_sandersonii
            Pomaria_stipularis
            Pomaria_wootonii
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1174]

	TITLE ITS;
	LINK TAXA = TaxaForAnalysisStep3000;
	DIMENSIONS NCHAR=604;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                         10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620      ]
[                                                          .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
Caesalpinia_epunctata                             TCGATGCCTCTAAAATAAACCCGTGAATTGGTTTCCGTAAATAACGGGGGATTGGGGGTGCATGTTGCCCTCGGTTCCC{CT}CGTCGACATGAGCGCTAGCTGCCTTGTGCTGCTCGTGCCTTGTTGACACAACTAACCCCGGCGCCATGCGCCAAGGAAATTTGTAAAAGTACGTGCCCACGAT{AG}GCCCGGAAACGGTGCTGGTCGGGGAGCATTGCGACAT{CT}TGTATACATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGC{AG}AGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCATCTCCACTATATCTAGTGTGC{CG}ATGGGATGGGCGGAACATGACCTCCCGTGAGCCTCGTCTTGCGGCTGGTCAAAAAAAGAGTCCTTGTTGTTGATTGCCACGCTCCTCGGTGGATGAGTAAAAC{CGT}TGATACCGGACGTGTGCAATGATCCCTAAGTTGGGCTTCGAGACCCTCGTGCGAATGCGCATCC{AG}AC
Caesalpinia_gilliesii                             TCGATGCCTCTGAAACAAACCCGCGAACTGG-TTTTGTAGATCTCAT------------------------------------CGGCGGGGGTGCCAGTGGCCGTGCGCTGCTTGTGGCCCTTCGACACAACTAACCCCGGCGCCCTGCGCCAAGGAAATTCGGAAAGCAATGTGCCTGCACACGCCCGGAGACGGTG-CGGTTGTGGGGCATTGCGTCAACTGTATGCTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCTGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCATGTCCCCCCTCGCATTCGGGGTCGGCGGGACGGGCGGAACATGGCCTCCCGCGATCCGAGCGTCGCGGTTGGCCAAAAAGAGAGTCCTCGGCGGCGACCGCTGCGCTCCTCGGTGAATGAGTGCAACTCGATGCCGGACGCGCGCGTTGCCGGACCGGTCGGGCTTTGGAACCCCAGTGCGAACGCACATCCAAC
Caesalpinia_mexicana                              TCGATGCCCCACAAACAAACCCGCGAACTCG-TTCCGCAGATCGCACGGAGGCGGGGGGCCGT-TCGCCCTCCTCTCACCGGTCGGCGGGCGCGCCGGCGGCCCCGCGCTGCCCGCGCCC-GGCGACGCAACCAACCCCGGCGCCCTGCGCCAAGGAATTTAAGAGAA---CGAGCCCACGACAGCCCGGGAACGGTG-CGGTCGGGGGGCATCGCGACAAGCGTACCAATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACACACCGTCGCCCCTCCCCTCCCTTGGCTTGCCTCGGGGGGCGGAGGGAGGGGCGGAACATGGCCTCCCGCGATGCGAGCCTCGCGGTTGGCCGAAAAGAGAGTCCCCTGCGGCGACCGCCGCGCTCCTCGGTGGACGGGTACAACTCGATGCCGGAGGCGTGCGCCGTCGACACGGCCGGG-ACAGAGACCCCTGGGCGATCGCGCCCACAAG
Caesalpinia_mimosifolia                           TCGATGCCTCTTAAACAGACTTGCGAACTGG-TTTTATAGACCTTGCGGAGTCGGGGGCCCTCGCTGCCCACGATTCCCTCGTCAGGAGGAGCGTCGGCTGTCTCGTGCAGTCGGTGCCCTATTGACACAAATAACCCCGGCGCCCTGCGCCAAGGAATTCTGAAAAACTACGTGCCCGCGACAGCCCGAAAACGGTGCAGGTCGGGGAGCAACGCGACAAGAGTATACATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCC-TACCACATCTCCCCTTGAATAGGGGAGTGACAGGACGGGCAGAATATGGCCTCC{CT}GTGAGCTTCGTCTCGCGGCTGGTTGAAAAGAGAGTCCTTGGTGGCGATCGCCACGCTCCTCGGTGGATGAGCGCAGCTCGATACCGGACGTGTGCGTCGTCCCCTCGGTTGGGCTCTGAGACCCTCATGCGATCGGGCATCCAAC
Caesalpinia_pannosa                               TCGATGCCTCCGAAACAAACCC-----------------GTT----------------------------------------------------------------------------------------------------GCCCTG{CT}GCCAAGGAAGTAAGGAAAA{CT}CGTGTGCCCGCGACAGCCCGAAAACAA{CT}G-C{AT}GTCGGTAGGCACAGCGACAACTGTATGCACAACGACTCTCGACAACGGATATCTTAGCTCTCGCAT{CG}GATGAAGAACGTAGCAAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTC{GT}TTGAACGCAAGTTGCACCTGAAGCCATTAGGGCGAGGGCATGTCTGCCTGGGCATCACACATCATTGCCCCTCCCATATCTCCCCTTGCATTTGGGGCCGGCGGGAAGGGCAAAACGTGGCTTCCCACGATGCGAGCCTTATGATTGGCCAAAAAGAGAGTCCTCGGCAGCGAACGCCTTGTTCCTCAGTGGATGACCACAACTTGATGCTAGACGCATGCGCCGTCGACTCAGCTGGGCTCTGAGAACCCCGTGCAACCGCGCATCCAAC
Caesalpinia_trichocarpa                           TCGATGCCTCTTAAACAGACCTGCGAACTGG-TTTTATAGACCTCGCGGAGTCGGGGGCCCTCGCTGCCCACGATTCCCTCGTCAGGAGGAGCGTCGGTTGTCTCGTGCAGCCGGTGCCCTATTGACACAAATAACCCCGGCGCCCTGCGCCAAGGAATTCTGAAAAACTACGTGCCCGCGACAGCCCGGAAACGGTACAGGTCGGGGAGCAACGCGACAAGAGTATACATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACACATCGTTGCCC-CACCACATCTCCCCTTGAATCGGGGAGTGACAGGGCGGGCGGAATATGGCCTCCCGTGAGCTTCGTCTTGCGGTTGGTTGAAAAGAGAGTCCTCGGCGGCGATCGCCACGCTCCTCGGTGGATGAGCAGAGCTCGATACCGGACGTGTGCGTCGTCCCCTCGGTTGGGCTCCGAGACCCTCGTGCGATCGCGCAT{CT}CAAC
'Hoffmannseggia burchellii ssp. rubro-violacea'   TCGATGCCTCTAAAACAAACCTGTGAACTGGTTCTTGCAGATAACGGGGGGTCGGGGGTGCTTGTTGCCCTTGGTTCCCTTGTCAACTAGAGCACCGGTTGCCTTGTGCTTCCCGTGCCTTGTTGATACAACTAACCCCGGCGCTATGCGCCAAGGAAATATGTAAAAGCACGTGCTCACGACAGCCCGGAGACGGTGCTCGTCAGGGAGCATCGCGACATCTGTATACATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACCTCGTTGCCCCTCCCCCGTCTCCACTGTGACTAGTGTGCGATAGGATGGGCA{AG}AACATGACCTCCCGTGAGCTTTGTCTCGCGGCTGGTCAAAAAAGGAGTCCTCGGCGGTGATTGCCACGCTCTTTGG{GT}GGATGAGTACAGCTCGATACCGGACGTGTGCGATGATCCCTAAGTTGGGCTCGGAGACCCT{CT}GTGCGACCGCACATACAAC
Pomaria_austrotexana                              TCGATGCCTCTAAAAAAAACCAGCGAACCGGTTCTTGCAAACAGCGGGGGATCGGGGGCGCGCGTCGCGCTCGGTTCCCCAGTTGATGCGGGTGCTGGCTGCCCCGTGCAGCCTGTGCCCCGTTGACACAACCAACCCCGGCGCACAGCGCCAAGGAAATT-GAAAACAAACGATCCCGTGATGGCCCGGAAACGGTGTCCGTCGGGGTGCATCGCGACAAGTGTATACAGAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCGTCTCTGGCACAATCGGCGTGCGACGGGATGGGCGGAACATGACCTCCCGTGAGCCTCGTCCCGCGGTTGGTCGAAATAAGAGTCCCCGGCGGTGATCGCCACGCTCCTCGGTGGATGAGTACGCCTCGATACCGGACGTGAGCGATGATCCCCGGGTCGGGCTCCGAGACCCTGGTGCGATTGCACATCCAAC
Pomaria_brachycarpa                               TCGATGCCTCTGAAACAAACCCGCGAACCGGTTCTTGCATACAGCGGGGGGTCGTGGGCGCGCGTCGCCCCCGGTTCCCCTGTCGATGCGGGTGCGGGCTGCCCCGAGCTGCCCGTGCTCCGTCGACAAGACCAACCCCGGCGCCGTGCGCCAAGGAAATTCGAAAAATCTTGATCCCGCGACGGCCCGGAAACGGTGTCCGTCGGGGAGCATCGCGACAAACGTATACACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGTCCCTCCCCCGCCTCTGCCGCAACCGGCGTGCGGCGGGATGGGCGGAACATGACCTCCCGCGAGCCTCGTCCCGCGGCTGGTCGAAATAAGAGTCCACGGCGGCCATCGCCACGCTCCTCGGTGGATGAGTGCATCTCGATACCGGACGCGCGCGATGGTCCCCGGGCCGGGCTCCGAGACCCTGGTGCGAACGCACATCCAAC
Pomaria_burchellii                                TCGATGCCTTTAAAACAAACCCGTGAATTGGTTCTTGCAGATAACGGGCGGTCGGGGGTGCTTGTTGCCCCCGGTTCCCCCGTCAACTTGAGCACCGGTTGCCTTGTGCTGCATGTGCCTTGTTGACACAACTAACCCCGGCGCTATGCGCCAAGGAAATCTGTAAAAGTACGTGCCCGCGACAGCTCGGAAACGGCGCTGGTCGCGGAGCGTCGCGACATCTGTATACACAACGACTCTCGGCAACGGATATCTCAGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCATCGTCTCTACCGTAATTAGTGTGCGACGGGATGGGCGGAACATGACCTCCCGTGTGCTTTGTCTCGCGGCTGGTCAAAAAAAGAGTCCTCGGCGGTGATTGCCACGCTCCTCGGTGGATGAGTGCAGCTCGATACCGGACGTGTGCGATGATCCCTGGGTTGGGCTCGGAGACCCTCGTGCGACCGCACATCCAAC
Pomaria_canescens                                 TCGATGCCTCTAAAACAAACCCGCGAATTGGTTCTTGCAGACAGCGGGGGATTGGGGGCGCGCGTCGCCCTCGGTTCCCCCGTCGACGCGGGTGCTGGCCGCCTCGCGCTGCCCGTGCCTCGTTGACACAACCAACCCCGGCGCCGCGCGCCAAGGAAATTCGAAAAATTGCGATCACGCGACGGCCCGGAAACGGTGTCCGTCGGGGAGCATCGCGACAAATGTATACACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACG{CT}AGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCGTCTTCGCCGCAACTGGCGTGCGACGGGGTGGGCGGAACATGACCTCCCGTGAGCCTCGTCTTGCGGCTGGTCGAAATAAGAGTCCCCGGCGGTGATCGCCACGCTCCTCGGTGGATGAGTACATCTCGATACCGGACGCGAGCGATGATCCCCGGGTTGGGCTCCGAGACCCTGGTGCAATCGCACATCCAAC
Pomaria_fruticosa                                 TCGATGCCTCTAAAACAAACCCGTGAATTGGTTTTTGCAGATAA{CT}GGGGGATCGGCGGTGCGTGTTGCCCTCGGTTCCCCCGTCGACACGGGTGCTGGCTGCCTCGTGCTGCCCGTGCCTTGTTGACACAACTAACCCCGGCGCCGTGCGCCAAGGAAATCTGTAAAACTACGAGCCCGCGACAGCCCGGAAACGGTGTCGGT{CG}GTGGAGCATCGCGACAACTGTATACATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCGTCTCCGCCTTAATTGGTGCGCGACGGGATGGGCGGAACATGACCTCCCGTGAGCTTCGTCTCGCGGCTGGTCGAAAAAAGAGTCCCCGGCGG{CT}GATTGCCACGCTCCTCGGTGGATGAGTACATCTCGATACCGGACGTGCGCGATGATCCCCAAGTTGGGCTCCGAGACCCTGGTGCGACCGCACATCCAAC
Pomaria_glandulosa                                TCGATGCCTCTAGAACAAACCCGCGAATCGGTTTTTGCTGATTGGGGGGCCGTGTTGGTGCACGCTGCCCTCGGTTCCCTCGTGAACACGAGCGCCGGCCGCCTTGCGCTGCCCGCGCCTTGTTGACACCACTAACCCCGGCGCTCTGCGCCAAGGAAGTCTGTGAAACTACGTGCCCTCGACGGCCCGGAAACGGTGCCGGTTGGGGAGCGTCGCGTCATGTGTACGAATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCGTCTCCACCATGACTTGCGTGCGACGGGATGGGCGGAACATGACCTCCCGTGAGCTTCGTCTTGCGGTTGATCGAAAAAAGAGTCCTCGGCGGCGATTGCCACGCTCCTCGGTGGATGAGTACAGCTCGATACCGGACGTGCGCGATGATCCCCGGGTTCGGCTCCGAGACCCTCGTGCGACTGCGCATCCAAC
Pomaria_jamesii                                   TCGATGCCTCTGAAACAAACCCGCGAACCGGTTCTTGCATACAGCGGGGGGTCGTGGGCGCGCGTCGCCCCCGGTTCCCCTGTCGATGCGGGTGCGGGCTGCCCCGAGCTGCCCGTGCTCCGTCGACAAGACCAACCCCGGCGCCGTGCGCCAAGGAAATTCGAAAAATCTTGATCCCGCGACGGCCCGGAAACGGTGTCCGTCGGGGAGCATCGCGACAAACGTATACACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGTCCCTCCCCCGCCTCTGCCGCAACCGGCGTGCGGCGGGATGGGCGGAACATGACCTCCCGCGAGCCTCGTCCCGCGGCTGGTCGAAATAAGAGTCCACGGCGGCCATCGCCACGCTCCTCGGTGGATGAGTGCATCTCGATACCGGACGCGCGCGATGGTCCCCGGGCCGGGCTCCGAGACCCTGGTGCGAACGCACATCCAAC
Pomaria_lactea                                    TCGATGCCTCTAAAATAAACC{CT}GTGAATTGGTTTTTGCAGACAACGGGGGGTCGGGGGTGCTTGTTGCCCTT{AG}GATCCCTCGTCAACATGAGTGCTGGTTGCCTTGTGCTGCCCGTGCCTTGTTGACACAATTAACCCCGGCGCTATGCGCCAAGGAAATTTGTAAAAGTACGTGCCCGCGACAGCC-GGAAACGGTGCTGGTCGGGGAGCACTGCGACATCTGTATGCATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCTGTCTCCACTATAACTAGTGTGCGATGGGATGGGCAGAACATGACCTCCCGTGAGCTTTGTCTTGCGGCTGGTCAAAAAAAGAGTCCTTGGTGGTGATTGCCACGCTCCTCGGTGGATGAGTATAGCTCGATACCGGACGTGTGCGATGATCCCTAAGTTGGGCTTCGAGACCCTTGCGCGATCGCACATCCAAC
Pomaria_melanosticta                              TCGATGCCTCTAAAACAAACCCGTGAACCGGTTCTTGCAGACAGCGGGGGATCGGGGGCGCGCGTCGGCCTCGGTCTCCCCGTCGACGCGGGTGCCGGCTGCCTCGTGCTGCTCGCGCCCCGTCGACACAACCAACCCCGGCGCCGTGCGCCAAGGAAATTTGAAAAGCCACGAGCCCGCGATGGCCCGGAAACGGTGTCCGTCGGGGAGCGTCGCGACAAATGTACACACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCGTCTCCGCCGCAACTGGCGTGCGACGGGATGGGCGGAACATGACCTCCCGTGAGCATCGTCTCGCGGCTGGTCGAAACAAGAGTCCCCAGCGGTGATCGCCACGCTCCTCGGTGGATGAGTACATCTCGATACCGGACGCGCGCGATGGTCCCCGGGACGGGCTTCGAGATCCTGGTGCGACCGCACATCCAAC
Pomaria_multijuga                                 TCGATGCCTCTAAAACAAACCCGTGAATAGGTTTTTGCAAATAATGGGGTGTCGGGGGTGCATGTTGCCCTCGATTTCCTTGTCAACATGAGTGCTGGTTGCCTTGTGCTGCA{CT}GTGCCTTGTTGACACAACTAACCCCGGCGCTATGCGCCAAGGAAATTTGTAAAACTACGTGCTCACGATAGCCCGGAAACGGTGCTGCTCGAGTAGCATCGCGACATCTGTATACATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCTGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCGTCTCCACTATAACTAGTGTGCGATGGGATGGGCGGAACATGACCTCCCGTGAGCCTTGTCTTGCGGTTGGTCAAAAAAAGAGTCCTTGGCGGTGATTGCCATGCTCCTCGGTGGATGAGTACAACTCGATACCGGACGTGTGCAATGATCCCTAAGT-GGGCTTTGAGACCCTCGTGCCACTGCACATCCAAC
Pomaria_pilosa                                    TCGATGCCTCTAAAACAAACCCGTGAATTGGTTTTCGTAAATAACGGGGGACCGGGGGTGCATGTTGCCCTCGGTTCCCCCGTCGACATGAGCGCTAGCTGCCTTGTGCTGCTCGTGCCTTGTTGACACAACTAACCCCGGCGCCATGCGCCAAGGAAATTTGTAAAAGTACGTGCCCACGATAGCCCGGAAACGGTGCTGGTCGGGGAGCATTGCGACATTTGTATACATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCC{AC}TTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCATCTCCACTATATCTGGTGTGCGATGGGATGGGCGGAACATGACCTCCCGTGAGCCTCGTCTTGCGGCTGGTCAAAAAAAGAGTCCTTGGTGTTGATTGCCACGCTCCTCGGTGGATGAGTAAAACTTGATACCGGACGTGTGCAATGATCCCTAAGCTGGGCTTCGAGACCCTCGTGCGACTGCGCATCCCAC
Pomaria_rubicunda                                 TCGATGCCTCTAAAATAAACCCGTGAATTGGTTTTCGTAAATAACAGGGGACTGGGGATGCATGTCGCCCTCGGTTCCCCCGTCAACACGAGTGCTAGTTGCCTTGTGCTGCTCGTGCCTTGTTGACACAACTAACCCCGGCGCTATGCGCCAAGGAAATTTGTAAAAGTACGTGCCCACGATAGCCCGGAAACGGTGCTGGTCGGGGAGCATTGCGACATCTGTATACATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCATCTCCACTATATCTAGTGTGCGATGGGATGGGCGGAACATGACCTCCCGTGAGCCTTGTCTTGCGGCTTGTCAAAAAAAGAGTCCTTGGTGTCGATTGCCACGCTCCTCGGTGGATGAGTAAAACTTGATACCGGACGTGTGCAATGATCCGTAAGTTGGGCTCCGAGACCCTCGTGCGACTGCACATCCAAC
Pomaria_rubicunda_var._hauthallii                 TCGATGCCTCTAAAATAAACCCGTGAATTGGTTTTCGTAAATAACAGGGGACTGGGGATGCATGTCGCCCTCGGTTCCCCCGTCAACACGAGTGCTAGTTGCCTTGTGCTGCTCGTGCCTTGTTGACACAACTAACCCCGGCGCTATGCGCCAAGGAAATTTGTAAAAGTACGTGCCCACGATAGCCCGGAAACGGTGCTGGTCGGGGAGCATTGCGACATCTGTATACATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCATCTCCACTATATCTAGTGTGCGATGGGATGGGCGGAACATGACCTCCCGTGAGCCTTGTCTTGCGGCTTGTCAAAAAAAGAGTCCTTGGTGTCGATTGCCACGCTCCTCGGTGGATGAGTAAAACTTGATACCGGACGTGTGCAATGATCCGTAAGTTGGGCTCCGAGACCCTCGTGCGACTGCACATCCAAC
Pomaria_sandersonii                               TCGATGCCTCTAAAACAAACCCGCGAATTGGTTTTTGCAGACAACGGGGGGTCAGGGGTGCTTGTTGCCCTCGGTTCCCCCGTCAACAGGTGTGCCGGTTGCCTTGTGCTGCCCGTGCCTTGTTGACACAACTAACCCCGGCGCTATGCGCCAAGGAAATCTGTAAAAGTACGTGCACGCGACAGACCGGAAACGGTGCTGGTCGGGGAGCATCGCGACATATGTATACATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCGTCTCCACTGTAACTAGTGCGCGACGGGATGGGCGGAACGTGACCTCCCGTGTGCTTTGTCTTGCGGCTGGTCAAAAAAAGAGTCCTTGGTGGTGATTGCCACGCTCCTCGGTGGATGAGTACAGCTCGATACCGGACGCGTGCGATGATCCC{CT}AGGCTGGGCTCGGAGACCCTCGTGCGACCGCACATCCAAC
Pomaria_stipularis                                TCGATGCCTCTAAAATAAACCCGTGAATTGGTTTTCGTAAATAACAGGGGACTGGGGATGCATGTCGCCCTTGGTTCCCCCGTCAACACGAGTGCTAGCTGCCTTGTGCTGCTTGTGCCTTGTTGACACAACTAACCCCGGCGCTATGCGCCAAGGAAATTTGTAAAAGCACGTGCCCACGATAGCCCGGAAACGGTGCTGGTCGGGGAGCATTGCGACATCTGTATACATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGTTCCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCCCATCTCCACTATATCTAGTGTGCGATGGGATGGGCGGAACATGACCTCCCGTGAGCCTTGTCTTGCGGCTTGTCAAAAAAAGAGTCCTTGGTGTCGATTGCCACGCTCCACGGTGGATGAGTAAAACTTGATACCGGACGTGTGCAATGATCCCTAAGTTGGGCTCCGAGACCCTCGTGCGACTGCACATCCAAC
Pomaria_wootonii                                  TCGATGCCTCTAAAACAAACCCGCGAACC--------------------------------------------GTTACCCCGTCGACGCGGGTTCTGGCTGCCCCGTGCAGCCCGTGCCCCGTTGACACAACCAACCCCGGCGCCCAGCGCCAAGGAAATTGGAAACAAAGCGATCCCCCGACGGCCCGGAAACGGAGTCCGTCGGGGAGCATCGCGACAAATGTATACACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATCGTTGCCCCTCCCACGTCTCTGCCCCAATCGGCGTGCGACGGGATGGGCGGAACATGACCTCCCGTGAGCCTCGTCTCGCGGTTGGCCAAAAAGAGAGTCCCCGGCGGTGATCGCCACGCTCCTCGGTGGATGAGTACGCCTCGATACCGGACGCGAGCGATGATCCCCGGGTCGGGCTCCGAGACCCTGGTGCGATCGCACATCCAAC
;
END;

BEGIN SETS;
	CHARSET ITS1 (CHARACTERS = ITS) =  1-229;
	CHARSET 5.8s (CHARACTERS = ITS) =  230-393;
	CHARSET ITS2 (CHARACTERS = ITS) =  394-604;
END;
[ The following blocks are output data for analysis step 3000 ]
BEGIN TREES;
      TITLE Tb7773;
      LINK TAXA = TaxaForAnalysisStep3000;
      TREE Fig._1C = [&R] (Caesalpinia_pannosa,Caesalpinia_mexicana,(Caesalpinia_gilliesii,((Caesalpinia_mimosifolia,Caesalpinia_trichocarpa),((((((Pomaria_wootonii,Pomaria_austrotexana),Pomaria_canescens),(Pomaria_brachycarpa,Pomaria_jamesii)),Pomaria_melanosticta),Pomaria_fruticosa),(Pomaria_glandulosa,(((Pomaria_burchellii,'Hoffmannseggia burchellii ssp. rubro-violacea'),Pomaria_sandersonii),(Pomaria_lactea,(Pomaria_multijuga,((Pomaria_pilosa,Caesalpinia_epunctata),((Pomaria_rubicunda,Pomaria_rubicunda_var._hauthallii),Pomaria_stipularis))))))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2441]


END;