#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 21, 2025; 11:37 GMT TreeBASE (cc) 1994-2008 Study reference: Stewart J., Kim M., James R., Dumerose R., & Klopfenstein N. 2006. Molecular characterizion of highly pathogenic F. oxysporum from a conifer nursery. Phytopathology, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1549] [ The following blocks are input data for analysis step 3005 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3005; DIMENSIONS NTAX=48; TAXLABELS Fusarium_oxysporum_9245H Fusarium_oxysporum_9302A Fusarium_oxysporum_9302E Fusarium_oxysporum_9302G Fusarium_oxysporum_9312D Fusarium_oxysporum_9312F Fusarium_oxysporum_9312H Fusarium_oxysporum_9312L Fusarium_oxysporum_9313Q Fusarium_oxysporum_9315G Fusarium_oxysporum_9343A Fusarium_oxysporum_9343E Fusarium_oxysporum_9343G Fusarium_oxysporum_9348A Fusarium_oxysporum_9348F Fusarium_oxysporum_9348J Fusarium_oxysporum_9408A Fusarium_oxysporum_9411B Fusarium_oxysporum_9411C Fusarium_oxysporum_9418C Fusarium_oxysporum_9418D Fusarium_oxysporum_9418E Fusarium_oxysporum_9447B Fusarium_oxysporum_9447E Fusarium_oxysporum_9447G Fusarium_oxysporum_9447J Fusarium_oxysporum_9448J Fusarium_oxysporum_9448M Fusarium_oxysporum_9449A Fusarium_oxysporum_9449C Fusarium_oxysporum_9449D Fusarium_oxysporum_9449E Fusarium_oxysporum_9449F Fusarium_oxysporum_9449H Fusarium_oxysporum_9449K Fusarium_oxysporum_9450A Fusarium_oxysporum_9458B Fusarium_oxysporum_9526E Fusarium_oxysporum_9613A Fusarium_oxysporum_9665J Fusarium_oxysporum_9665K Fusarium_oxysporum_Fo47 Fusarium_oxysporum_latucae_0349 Fusarium_oxysporum_lycopersici_0350 Fusarium_oxysporum_melonis_0348 Fusarium_proliferatum_9223F Fusarium_proliferatum_9721B Fusarium_proliferatum_9816A ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1179] TITLE Fig_1_Stewart_et_al.; LINK TAXA = TaxaForAnalysisStep3005; DIMENSIONS NCHAR=146; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=9 GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 ] [ . . . . . . . . . . . . . . ] Fusarium_oxysporum_9245H 10010000000001000001011000010100100010000100101110000010010111111101000111000010101100010111101001000101000009010000001010000011111001111100011000 Fusarium_oxysporum_9302A 10010001000001001001011000010100100010000100101110000010010111111101901111000010101100010111101001000101000009010000001010000111111001111100011000 Fusarium_oxysporum_9302E 11110001909900109110011000101010000011000110010010000000111000001111001111100000001100010111001001101010010000001100110100010001100000000000091000 Fusarium_oxysporum_9302G 10019000100001000001011000010100100010000100101110000010010111111100001111000010101100010101101001000101000009010000001010000111111001111100011000 Fusarium_oxysporum_9312D 10910010000001000001011000010100100010000100101110000010010111111100010011000100100100010101101001000101000000010000001010000111111001111100011000 Fusarium_oxysporum_9312F 10010000000001001001011000010100101010000100101110000010010111111000001111000010101100010111101001001101000000010000001010000011111000111100911000 Fusarium_oxysporum_9312H 10010001000001009011011000010100109010000100101110000011010111111101009119000010101100110111101001009101000009010000001010000111111001101110011000 Fusarium_oxysporum_9312L 11110000000009001100011100101010001110000110000010100000111010001110011111001010101110110110001001101019010000909100010010100011100100000000101000 Fusarium_oxysporum_9313Q 10919000109001009001011000010100100010000100101110000010010111111109001111000010101100010111101001009101000009010000001010000111111001111100011000 Fusarium_oxysporum_9315G 11110000000000001100011100101010001110000110000010100000111010000110011111001010101110110110001001101010000000000100010010100011100100000000101000 Fusarium_oxysporum_9343A 11110009110000001100011100101010001110000110000010100000111010911111011111091010191110110110911001101019010000001100010110100011100100000000101000 Fusarium_oxysporum_9343E 11110000000000001100011100101010001110000110000010100000111010000111011011001010001110010110001001101010010000000100010010100011100100000000101000 Fusarium_oxysporum_9343G 11110000000000001100011100101010001110000110000010100000111010001111011111001010101110010110001001101010010000000100010010110011100100000000101000 Fusarium_oxysporum_9348A 11110000019000001100011100101010001110000110000010100000111010000110011910001010001110010110011001101010010000000100010110100001100100000000101000 Fusarium_oxysporum_9348F 11110000100000001100011000101010191110000100000010000000111010000119011910001019001110010110000001101010010000000100010000001001100100000000101000 Fusarium_oxysporum_9348J 11110000000000001100011100101010001110000110000010100000111010000110001911001010001110010110001001101010010000000100010010100001100100000000101000 Fusarium_oxysporum_9408A 10019000100001000001011000010100100010000100101110000010010111011100000111000000101100010101101001000101000000010000001010000111111001111000011000 Fusarium_oxysporum_9411B 11110000000000001100011100101010001110010110000010100000111019000110001111001010001110010110001001101010010000900101010110000011900100000000101000 Fusarium_oxysporum_9411C 11110000019000001100011100101010001110000110000010100000111010000110001110001010001110010110011001101010010000000100090110100001900100000000101000 Fusarium_oxysporum_9418C 11110000000000001100011100101010001110000110000010100000111010000111001011001010001110010110001001101010010000000100010010100091100100000000001000 Fusarium_oxysporum_9418D 11110000000000000000001000000900000090000000000000000000000000000111001111001010001110010110001001101010010000000101010010000001100100000000101000 Fusarium_oxysporum_9418E 10010000010001000001011000010100100010000100111110000010010111001000000111000000101100010101101001000101000000000000001010000111111000111000011000 Fusarium_oxysporum_9447B 10919000100001000001011000010100100010000100111110000010010111011100000011000000101100010101101001000101000000010000001010000111111001111000011000 Fusarium_oxysporum_9447E 99999999999999999999999999999999999999999999999999999999999999000110001110001010001110010110011001101010000000000100010110100001100100000000101000 Fusarium_oxysporum_9447G 10010000010001000001011000010190100010000100101110000010010111011000000011000000101100010101101001000101000000010000001010000119110000111000011000 Fusarium_oxysporum_9447J 10910000000001000001011000010100100010000100101110000010010111111000010011000100100100010101101001000101000000010000001010000111111000111100011000 Fusarium_oxysporum_9448J 11110000000000001100011100101010001110000110010010100000111010000110001110001010001110010110001001101010010000000100010010100001100100000000101000 Fusarium_oxysporum_9448M 19010909910001000001011000010109100010000100101100000000000111011100000011000000101100010101101001000101000009010000001010000119111001111900011000 Fusarium_oxysporum_9449A 10010000010001000001011000010100100010000100101110000010010111011100000110000000001100010101101001000101000000010000001010000111111000111000010000 Fusarium_oxysporum_9449C 11110000019000001100011100101010001110000110000010100000111010000110001010001010001110010110011001101010010000000100010110100091900100000000101000 Fusarium_oxysporum_9449D 11110000000000001100011100101010001110000110000010100000111010000111001111001010001110010110001001101010010000000100010010110001100100000000101000 Fusarium_oxysporum_9449E 11110000000000001100011100101010001110000110000010100000111010000111001011001010001110010119901101101010000000000100010010110001100100000000101000 Fusarium_oxysporum_9449F 11110000019000001100011100101010001110000110000010100000111010000110001110001010001110010110011001101010000000000100000110100001100100000000101000 Fusarium_oxysporum_9449H 11110000910000001100011100101010001110000110000010101000111010000110001010001010001110010110011101101010010000000100000110100001900100000000101000 Fusarium_oxysporum_9449K 11110000000000001100011100101010001110010110000010000000111010000119001011001010001110010110101001101010010000900101000010000001100100000000101000 Fusarium_oxysporum_9450A 11110000019000001100011100101010001110000110000010100000111010000110001010001010001110010110011001101010010000000100010110100001100100000000101011 Fusarium_oxysporum_9458B 11010000010901000000011010010100100010000190101110000011010111010100000010000000101100010101101001000101000000010000001010000011101000111000011000 Fusarium_oxysporum_9526E 10019000100101000100011010010100100010000100191110000010010110000100090010000000101100011001101001000101000000000000001010000011111001111000011000 Fusarium_oxysporum_9613A 10010000990001000101011000010100100010000100101110000990010111011100000011000000101100010101101001000101000000010000001010000111111000111000011000 Fusarium_oxysporum_9665J 11110100000001011110001000091010000010000110000910100000011000000100000010109910001101019111101001100010010000010100110011011001100100000001101000 Fusarium_oxysporum_9665K 10019000100001000101011000010100100010000100101110000011010111010100000910000000101100010101101001000101000000010000001010000111111001111000011000 Fusarium_oxysporum_Fo47 11110000000010009110011100101000101110090110000011100000111010000110001010001010001110010119901001101010010000000100110110000011100100000000101000 Fusarium_oxysporum_latucae_0349 11110001000000001100011100101010001110000111000010100000111010000110001010011010001110110110001001101010010100000110010010100011100100000000101000 Fusarium_oxysporum_lycopersici_0350 11110000000000010100001000101000101110000100010010110000111010900110001910000010091110110111001001100010011009100100010010010111000100000100101000 Fusarium_oxysporum_melonis_0348 11010010000000011110011000101010000011000110000010100000111000000100010011109000191100910111001001100010010000000100010011000011100100000000101000 Fusarium_proliferatum_9223F 11100001001101009000101001101001010000101111010001000100000000000010010010011000001000010000000000010010100111000100000000010009900010900000001190 Fusarium_proliferatum_9721B 11001001001101000000101000101001010000101111010011000100000000000099010010011001011000010100000000010010100111000100000000000000100010010000001100 Fusarium_proliferatum_9816A 11001000001101000000101000101001010000100010000009000900000000000090010010011001011000010100000010010010100111000100000000000000000010910000001190 ; END; [ The following blocks are output data for analysis step 3005 ] BEGIN TREES; TITLE Tb7778; LINK TAXA = TaxaForAnalysisStep3005; TREE Fig._1 = [&R] ((Fusarium_proliferatum_9223F,Fusarium_proliferatum_9721B),((((Fusarium_oxysporum_9245H,Fusarium_oxysporum_9302G,Fusarium_oxysporum_9313Q,Fusarium_oxysporum_9312F,(Fusarium_oxysporum_9302A,Fusarium_oxysporum_9312H)),(Fusarium_oxysporum_9312D,Fusarium_oxysporum_9447J)),Fusarium_oxysporum_9447B,Fusarium_oxysporum_9447G,Fusarium_oxysporum_9448M,Fusarium_oxysporum_9449A,Fusarium_oxysporum_9526E,Fusarium_oxysporum_9665K,Fusarium_oxysporum_9408A,Fusarium_oxysporum_9458B,Fusarium_oxysporum_9613A,Fusarium_oxysporum_9418E),((Fusarium_oxysporum_9315G,Fusarium_oxysporum_9312L,Fusarium_oxysporum_9343A,Fusarium_oxysporum_9343G),(Fusarium_oxysporum_9348A,Fusarium_oxysporum_9411C,Fusarium_oxysporum_9447E,Fusarium_oxysporum_9449C,Fusarium_oxysporum_9449F,Fusarium_oxysporum_9449H,Fusarium_oxysporum_9450A),Fusarium_oxysporum_9302E,(Fusarium_oxysporum_9665J,Fusarium_oxysporum_melonis_0348),Fusarium_oxysporum_9343E,Fusarium_oxysporum_9348F,Fusarium_oxysporum_9348J,Fusarium_oxysporum_9411B,Fusarium_oxysporum_9448J,Fusarium_oxysporum_9449D,Fusarium_oxysporum_9449E,Fusarium_oxysporum_9449K,Fusarium_oxysporum_9418C,Fusarium_oxysporum_9418D,Fusarium_oxysporum_latucae_0349,Fusarium_oxysporum_lycopersici_0350,Fusarium_oxysporum_Fo47)),Fusarium_proliferatum_9816A); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2450] END;