#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 12, 2025; 11:16 GMT TreeBASE (cc) 1994-2008 Study reference: Schmidt-lebuhn A., Kessler M., & Kumar M. 2006. Promiscuity in the Andes: Species relationships in Polylepis (Rosaceae, Sanguisorbeae) based on AFLP and morphology. Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1565] [ The following blocks are input data for analysis step 3047 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3047; DIMENSIONS NTAX=32; TAXLABELS Acaena_Elongatae Polylepis_aff_besseri Polylepis_australis Polylepis_besseri Polylepis_cristagalli Polylepis_flavipila Polylepis_hieronymi Polylepis_incana Polylepis_incarum Polylepis_lanata Polylepis_lanuginosa Polylepis_microphylla Polylepis_multijuga Polylepis_neglecta Polylepis_pacensis Polylepis_pallidistigma Polylepis_pauta Polylepis_pepei Polylepis_quadrijuga Polylepis_racemosaNPe Polylepis_racemosaSPe Polylepis_reticulata Polylepis_rugulosa Polylepis_sericea Polylepis_subsericans Polylepis_subtusalbida Polylepis_tarapacana Polylepis_tom_inc Polylepis_tom_nana Polylepis_tom_tom Polylepis_triacontandra Polylepis_weberbaueri ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1212] TITLE Reweighted; LINK TAXA = TaxaForAnalysisStep3047; DIMENSIONS NCHAR=28; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5" MISSING=? GAP= -; CHARSTATELABELS 1 arborescent_growth_form / no yes, 2 'bark color (ordered)' / orange_brown reddish_brown blackish_brown, 3 bark_texture / 'thin, shed in long bands' 'thick, shed in short pieces', 4 'number of leaflets (ordered)' / '>11' '7-11' '5-7' '3-5' 3., 5 'distribution of leaf serration (ordered)' / along_entire_leaflet_margin only_on_distal_half_of_leaflet absent, 6 'shape of leaflet apex (ordered)' / acute rounded emarginate, 7 shape_of_leaflet_base / cordate acute, 8 'leaf margin revolute (ordered)' / not_or_weakly conspicuously strongly, 9 leaf_texture / chartaceous coriaceous, 10 'adaxial leaflet surface with pale grey-blue layer' / no yes, 11 multicellular_brown_glandular_hairs_adaxially_on_the_central_leaflet_vein / 'present, with mace-like apex' absent 'present, with acute apex', 12 'short, multicellular glandular hairs with yellowish content on stipular sheaths' / absent present, 13 type_of_hairs_on_the_abaxial_leaflet_surface / 'sericeous, strigose' lanose_or_villous 'lanose-villous with very short hairs and-or glandular' puberulous_and_glandular, 14 indument_in_adaxial_leaflet_surface / 'sericeous, strigose' lanose_or_villous glabrous, 15 distribution_of_hairs_on_abaxial_leaflet_surface / mainly_on_veins evenly, 16 ring_of_multicellular_brown_glandular_hairs_on_the_rachis_between_the_leaflet_ba / present absent, 17 incision_of_the_stipular_sheath_relative_to_sheath_length / '> 0.5' '< 0.5', 18 'spurs on the stipular sheath (ordered)' / conspicuous weak absent, 19 'type of hairs on the stipular sheath (ordered)' / 'lanose, villous or glandular' sericeous_or_strigose glabrous, 20 'number of flowers per inflorescence (ordered)' / '>25' '12-30' '10-15' '5-12' '3-8' '1-3', 21 inflorescence_structure / branched unbranched, 22 floral_petiole / present absent, 23 hairs_on_style_basis / present absent, 24 'hairs on the anthers (ordered)' / absent mainly_on_distal_half along_whole_anther, 25 shape_of_the_stigma / 'variable, not flat and disc-like' 'flat, disc-like', 26 fruit / glochidium cupula_with_slender_spines 'cupula with coarse, rigged edges' cupula_with_membranose_edges 'cupula with knobbly, twisted edges', 27 'number of palisade parenchyma layers (ordered)' / '2-3' 2. 1., 28 cuticule_thickness / thin thick, ; MATRIX [ 10 20 30 40] [ . . . .] Acaena_Elongatae 0{01}0{01}000000000000001000000000 Polylepis_aff_besseri 1113011110112110120301011220 Polylepis_australis 111200000010011001{01}311121310 Polylepis_besseri 11122{12}0110111110010301011220 Polylepis_cristagalli 1113111111111111110301011220 Polylepis_flavipila 111300111011{01}110021411021220 Polylepis_hieronymi 1111220110001011021110111110 Polylepis_incana 111411{01}1101131100203010{12}1220 Polylepis_incarum 11131{01}1110111110010301011220 Polylepis_lanata 1112{01}20110111100010310121220 Polylepis_lanuginosa 1002010110000001101210??11?0 Polylepis_microphylla 0111220110001111120401011111 Polylepis_multijuga 10000000102010110010000?11?0 Polylepis_neglecta 1113010000102110012111021310 Polylepis_pacensis 11121{12}1110102110010411121220 Polylepis_pallidistigma 1113011110112111110311011220 Polylepis_pauta 1001000000000001001010{01}{12}1100 Polylepis_pepei 1003220110000000021501{01}{12}1400 Polylepis_quadrijuga 1212120110001111100201011111 Polylepis_racemosaNPe 111{23}1{01}{01}11011{01}1?0010311021220 Polylepis_racemosaSPe 111{23}110110111100010411021220 Polylepis_reticulata 1112120110001001111401011111 Polylepis_rugulosa 1114110110111110010401021220 Polylepis_sericea 10011{01}01{01}0000001101101{01}{12}1100 Polylepis_subsericans 1114221110100011111511021210 Polylepis_subtusalbida 111{23}1{01}011111{12}110020400011220 Polylepis_tarapacana 1114200210113{12}1001{02}501021221 Polylepis_tom_inc 11141111101131111204010{12}1220 Polylepis_tom_nana 01141{01}{01}11011311002{02}401021220 Polylepis_tom_tom 11131{01}1110113110010401021220 Polylepis_triacontandra 11132{01}1110111100010211{01}21220 Polylepis_weberbaueri 1111220110001111120301011111 ; END; BEGIN ASSUMPTIONS; WTSET * mywets = 0.15: 24 , 0.17: 9 13 19-20 , 0.13: 4 22 , 0.08: 17 , 0.05: 7 , 0.04: 6 , 0.53: 2 , 0.1: 15-16 21 , 0.5: 8 , 0.06: 5 , 0.11: 18 , 1.0: 3 11-12 25-27 , 0.38: 28 , 0.58: 14 ; WTSET mywets = 0.08: 17 , 0.38: 28 , 0.11: 18 , 0.5: 8 , 0.1: 15-16 21 , 0.06: 5 , 0.53: 2 , 0.15: 24 , 0.04: 6 , 0.05: 7 , 0.58: 14 , 1.0: 3 11-12 25-27 , 0.13: 4 22 , 0.17: 9 13 19-20 ; END; [ The following blocks are output data for analysis step 3047 ] BEGIN TREES; TITLE Tb7820; LINK TAXA = TaxaForAnalysisStep3047; TREE Fig._4 = [&R] (Acaena_Elongatae,((Polylepis_multijuga,(Polylepis_lanuginosa,(Polylepis_sericea,(Polylepis_pepei,(((((Polylepis_weberbaueri,Polylepis_microphylla),Polylepis_quadrijuga),Polylepis_reticulata),Polylepis_hieronymi),((((((((((Polylepis_incana,Polylepis_tom_nana,Polylepis_tom_inc),Polylepis_tom_tom),Polylepis_tarapacana),Polylepis_rugulosa),(((Polylepis_incarum,(Polylepis_cristagalli,(Polylepis_aff_besseri,Polylepis_pallidistigma))),Polylepis_besseri),Polylepis_subtusalbida)),(Polylepis_triacontandra,Polylepis_flavipila)),((Polylepis_racemosaNPe,Polylepis_lanata),Polylepis_racemosaSPe)),Polylepis_pacensis),(Polylepis_neglecta,Polylepis_australis)),Polylepis_subsericans)))))),Polylepis_pauta)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2491] END;