#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 24, 2024; 18:23 GMT

TreeBASE (cc) 1994-2008

Study reference:
Gams W., & Meyer W. 1998. What exactly is Trichoderma harzianum?. Mycologia, 90(5):
904-915.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S320]

[ The following blocks are input data for analysis step 306 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep306;
        DIMENSIONS NTAX=8;
        TAXLABELS
            Trichoderma_harzianum_CBS185.69
            Trichoderma_harzianum_CBS354.33
            Trichoderma_harzianum_Th1_CBS688.94
            Trichoderma_harzianum_Th2_CBS689.94
            Trichoderma_harzianum_Th3_CBS693.94
            Trichoderma_inhamatum_CBS273.78
            Trichoderma_longibrachiatum_CBS816.68
            Trichoderma_viride_CBS240.63
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1251]

	TITLE ITS1;
	LINK TAXA = TaxaForAnalysisStep306;
	DIMENSIONS NCHAR=275;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=. GAP= -;

MATRIX
[                                                 10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     ]
[                                                  .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
Trichoderma_harzianum_CBS185.69           CCGAGTTTACAACTCCCAAACCC.AATGTGAACCATACCAAACTGTTGCCTCGGCGGGGTCAC..GCCCCGGGTGCGTCGCAGCCCCGGAACC.A.GGCGCCCGCCGGAGGGACCAACC..AAACTCTT.TCTGTA.GTCCCC...........TCGCGG.AC.GTTATTTCTTACAGCTCTGAGCAAAAA...................T.TCCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAG
Trichoderma_harzianum_CBS354.33           CCGAGTTTACAACTCCCAAACCC.AATGTGAACGTTACCAAACTGTTGCCTCGGCGGGATCTCT.GCCCCGGGTGCGTCGCAGCCCCGGA.CCAA.GGCGCCCGCCGGAGG.ACCAACC.AAAACTCTTTT.TGTATACCCCC...........TCGCGG....GTT.TTT.T.ATAA.TCTGAGCCTT.CTCGGCGCCTCTCGTAGGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAG
Trichoderma_harzianum_Th1_CBS688.94       CCGAGTTTACAACTCCCAAACCC.AATGTGAACGTTACCAAACTGTTGCCTCGGCGGGATCTCT.GCCCCGGGTGCGTCGCAGCCCCGGA.CCAA.GGCGCCCGCCGGAGG.ACCAACCTAAAACTCTTAT.TGTATACCCCC...........TCGCGG....GTTTTTT.T.ATAA.TCTGAGCCTTTCTCGGCGCCTCTCGTAGGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAG
Trichoderma_harzianum_Th2_CBS689.94       CCGAGTTTACAACTCCCAAACCC.AATGTGAACGCTACCAAACTGTTGCCTCGGCGGGATCTCT.GCCCCGGGCGCGTCGCAGCCCCGGA.CCAA.GGCGCCCGCCGGAGG.ACCAACCCAAAACTCTTAT.TGTATACCCCC...........TCGCGG....GTTATTT.TTACTA.TCTGAGCCTT.CTCGGCGCCCCTCGTGGGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAG
Trichoderma_harzianum_Th3_CBS693.94       CCGAGTTTACAACTCCCAAACCC.AATGTGAACCATACCAAACTGTTGCCTCGGCGGGGTCAC..GCCCCGGGTGCGTCGCAGCCCCGGAACC.A.GGCGCCCGCCGGAGGGACCAACC..AAACTCTTTTCTGTA.GTCCCC...........TCGCGG.AC.GTTATTTCTTACAGCTCTGAGCAAAAA...................T.TC.AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAG
Trichoderma_inhamatum_CBS273.78           CCGAGTTTACAACTCCCAAACCC.AATGTGAACGTTACCAAACTGTTGCCTCGGCGGGATCTCT.GCCCCGGGTGCGTCGCAGCCCCGGA.CCAA.GGCGCCCGCCGGAGG.ACCAACC.AAAACTCTTAT.TGTATACCCCC...........TCGCGG....GTTTTTT.TTATAA.TCTGAGCCTT.CTCGGCGCCTCTCGTAGGCGTTTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAG
Trichoderma_longibrachiatum_CBS816.68     CCGAGTTTACAACTCCCAAACCCCAATGTGAACGTTACCAATCTGTTGCCTCGGCGGGTTCTCTTGCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGG.ACCAACTCCAAACTCTTTTTT.TCTCTCCGTCGCGGCTCCCGTCGCGGCTCTGTTTTAT.TTT.TGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAG
Trichoderma_viride_CBS240.63              CCGAGTTTACAACTCCCAAACCC.AATGTGAACCATACCAAACTGTTGCCTCGGCGGGGTCAC..GCCCCGGGTGCGTCGCAGCCCCGGAACC.A.GGCGCCCGCCGGAGGGACCAACC..AAACTCTT.TCTGTA.GTCCCC...........TCGCGG.AC.GTTATTT.TTACAGCTCTGAGCAAAAA...................T.TC.AAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAG
;
END;

[ The following blocks are output data for analysis step 306 ]
BEGIN TREES;
      TITLE Tb5086;
      LINK TAXA = TaxaForAnalysisStep306;
      TREE Fig._4 = [&R] (Trichoderma_longibrachiatum_CBS816.68,((Trichoderma_harzianum_Th2_CBS689.94,(Trichoderma_inhamatum_CBS273.78,Trichoderma_harzianum_CBS354.33,Trichoderma_harzianum_Th1_CBS688.94)),(Trichoderma_viride_CBS240.63,Trichoderma_harzianum_CBS185.69,Trichoderma_harzianum_Th3_CBS693.94)))Trichoderma;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1476]


END;