#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 09, 2024; 23:42 GMT TreeBASE (cc) 1994-2008 Study reference: Marek P., & Bond J. 2006. Phylogenetic systematics of the colorful, cyanide-producing millipedes of Appalachia (Polydesmida, Xystodesmidae, Apheloriini) using a total evidence Bayesian approach. Molecular Phylogenetics and Evolution, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1580] [ The following blocks are input data for analysis step 3077 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3077; DIMENSIONS NTAX=73; TAXLABELS Apheloria_montana Apheloria_tigana Boraria_infesta Boraria_stricta Brachoria_cedra Brachoria_dentata Brachoria_electa Brachoria_enodicuma Brachoria_eutypa_ethotela Brachoria_eutypa_eutypa Brachoria_falcifera Brachoria_glendalea Brachoria_hoffmani Brachoria_hubrichti Brachoria_indianae Brachoria_initialis Brachoria_insolita Brachoria_laminata Brachoria_ligula Brachoria_mendota Brachoria_ochra Brachoria_separanda_calcaria Brachoria_separanda_hamata Brachoria_separanda_separanda Brachoria_separanda_versicolor Brachoria_sp._220 Brachoria_sp._282 Brachoria_sp._296 Brachoria_sp._71 Brachoria_splendida Brachoria_turneri Brevigonus_shelfordi Cherokia_georgiana_georgiana Cherokia_georgiana_latassa Cleptoria_arcuatus Cleptoria_rileyi Cleptoria_sp._389 Croatania_catawba Croatania_simplex Deltotaria_brimleii_brimleii Deltotaria_lea Deltotaria_philia Dicellarius_atlanta Dicellarius_bimaculatus_fictus Dicellarius_talapoosa_talapoosa Dixioria_dactylifera Dixioria_pela_coronata Dynoria_icana Dynoria_medialis Falloria_nantahalae Falloria_prolata Furcillaria_aequalis Furcillaria_convoluta Furcillaria_laminata Nannaria Nannaria_austricola Pachydesmus_crassicutis_incursus Pachydesmus_crassicutis_laticollis Pleuroloma_flavipes Pleuroloma_plana Prionogonus_divergens Rhysodesmus_Querteraro Rhysodesmus_agrestis Rudiloria_mohicana Rudiloria_trimaculata_kleinpeteri Rudiloria_trimaculata_trimaculata Sigmoria_australis Sigmoria_latior_latior Sigmoria_nigrimontis_nigrimontis Sigmoria_quadrata Sigmoria_rubromarginata Thrinaxoria_bifida Thrinaxoria_lampra ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1237] TITLE Morphology; LINK TAXA = TaxaForAnalysisStep3077; DIMENSIONS NCHAR=68; FORMAT DATATYPE=Standard SYMBOLS= "A C T G N 0 1 2 3 4 5 6 D E F H J K L M P Q R B S U" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 ] [ . . . . . . ] Apheloria_montana 10101000001110000211000100000011200023100201201000000110011200110011 Apheloria_tigana 10101000001110000111000100000011200023100201201000000110011200110011 Boraria_infesta 00000000000000000000000000000000000000000100101000011100100000010100 Boraria_stricta 00000000000000100000112001300000001000000103201001011100100000000100 Brachoria_cedra 1010110000111000011100010000121120001110?????01011000110011200000011 Brachoria_dentata 1011210000112001011211010000111130001210?????01012001110011210010011 Brachoria_electa 10101100001121000111121100001211200013100200201001001100011210110011 Brachoria_enodicuma 1010110110111000011200030000121130001210?????01000010110011200010011 Brachoria_eutypa_ethotela 10101100001110000112000200001211300012100300201112001100011210010011 Brachoria_eutypa_eutypa 10101100001110000111000200001211200012100302201112001100011110010011 Brachoria_falcifera 1010110000112000011200020000121130001210?????11112001110011110010111 Brachoria_glendalea 1010111000112100011200032000121130001110?????01000001110011200010011 Brachoria_hoffmani 10101100001121100112000200001211300012110301201012001110011210010011 Brachoria_hubrichti 10101100001210000112000100001211301011110312201001000110011200010011 Brachoria_indianae 1010111110111100011112120000121120001110?????11000000100011200010011 Brachoria_initialis 10101100001110000111000100001211200011100210201000000110011200010111 Brachoria_insolita 1010110001112000011100010000111120001310?????11111001110011110010011 Brachoria_laminata 10101100001220000111111211101211201012110301201011001110011110010111 Brachoria_ligula 10101100001120000121142211301211200012100213201012001110011210010011 Brachoria_mendota 10101000001120000111000100001211100012100210201112001110011000010011 Brachoria_ochra 10101100001111100112132100001211300011100303201000000110011210110011 Brachoria_separanda_calcaria 10101101101110000111000200001211200012100211201012001110011210010011 Brachoria_separanda_hamata 1010110000111000011100020000121120001210?????11112001110011210010011 Brachoria_separanda_separanda 10101100001110000112000100001211300012100211201012001110011100010011 Brachoria_separanda_versicolor 1010110000111000011114220000121120001210?????01112001110011210010011 Brachoria_sp._220 10101100001110000111000100001211200012100302201112001110011200010011 Brachoria_sp._282 10101100001110000111000200001211200012100102201112001110011110010011 Brachoria_sp._296 10101100001110000112000100001211300012100301201112001110011100010011 Brachoria_sp._71 10101100001111000112132211301211300012100303201000000110011210010011 Brachoria_splendida 10101100001221110112112221101211301011110302201001000110011210010111 Brachoria_turneri 10101100001111000112111320001211300012110102201112001100011210010011 Brevigonus_shelfordi 10101000000111000110112100000010000013110303201012000111011210000001 Cherokia_georgiana_georgiana 00000000000001000000112001310000010100001010001000001010011200000101 Cherokia_georgiana_latassa 000000000000010000001120013100000101000010100?1000001010011200100101 Cleptoria_arcuatus 10101011201120000111121200000011201013100303201000000110011210100001 Cleptoria_rileyi 1011201110122100011112212000001110101311?????01000000111011200100001 Cleptoria_sp._389 10112000001121000111122120000011201013110303201000000110011200100011 Croatania_catawba 10101001201121100111112121200011111013110303201001000111011110100001 Croatania_simplex 10101001201111100111112100000011100013110103201001000111011210100001 Deltotaria_brimleii_brimleii 1110100000111000011113110000001110001210?????01012101100000100010011 Deltotaria_lea 1111200000111100011113110000001110101110?????11000000110011200010011 Deltotaria_philia 1111200000111000011111110000001110001210?????01000001100011100010011 Dicellarius_atlanta 10000110000000000000000001300000020000000200201000011100001210111111 Dicellarius_bimaculatus_fictus 1000010000000000000011100130000002000000?????01000010100001210111111 Dicellarius_talapoosa_talapoosa 1000011000000000000000000130000002000000?????01000010101001210111111 Dixioria_dactylifera 1010110000111010011100010120001112001210?????01012001100011110110011 Dixioria_pela_coronata 10101100001110101112000101200011310012100201101012001100011100110011 Dynoria_icana 1011210000010000001014132130001002111101?????01001000110011210010011 Dynoria_medialis 10112100000101000010121121300010021011010100201001000110011210100001 Falloria_nantahalae 10101100001121110111111310000011101012100111201012001100011210010011 Falloria_prolata 10101000001121010112111301200011300011100303201011001110011210110011 Furcillaria_aequalis 10101100000001000000141121100010010100110201201001000010011210100001 Furcillaria_convoluta 10101000001121100121000121300011111011110303201000100011011210100001 Furcillaria_laminata 10112100000010100000112321100010011101110311201001000110011210100001 Nannaria 10000000000000100000000000000010000000000110200000001100011001000002 Nannaria_austricola 10000010001101100111111010000011101003000110200000001100011001000002 Pachydesmus_crassicutis_incursus 11000100000000000000111011300000030000000210201000000100001210111111 Pachydesmus_crassicutis_laticollis 11000100000000000000111011300000030000000100201000000101001210111110 Pleuroloma_flavipes 00000000000000000000121011200010020003010110201001001000011200000000 Pleuroloma_plana 00000000000000000000121011200010020003010110101000000000011200000101 Prionogonus_divergens 10101100001120000121112321100011101012110313201000000111011110100001 Rhysodesmus_Querteraro 0000000000000000000011200130000001000000?????01000001100001200100100 Rhysodesmus_agrestis 00000000000000000000112001300000010000000100200000001100000200010110 Rudiloria_mohicana 10112100001120000112000100000011300012100201201001001110011010110011 Rudiloria_trimaculata_kleinpeteri 1010110001112000011214210000001130001210?????01011001110011110110011 Rudiloria_trimaculata_trimaculata 10101100011120000112000200000011300012100211201011000110011210110011 Sigmoria_australis 10101100001121000121000121200011100012100103201000100110011200100001 Sigmoria_latior_latior 10101000001121010122111201300011300011100203201000000110011200100001 Sigmoria_nigrimontis_nigrimontis 10101000011111000111132100000011100012100303201012001100011110010011 Sigmoria_quadrata 10101010001121000121131210000011201011100303201000000110011200110001 Sigmoria_rubromarginata 1010100000112100011111130000001120001310?????01000000110011210110011 Thrinaxoria_bifida 10000100000000000000111011200000020000000100211000011100011210111100 Thrinaxoria_lampra 10000110000000000000000001200010020003000102211000010101001200011100 ; END; [ The following blocks are output data for analysis step 3077 ] BEGIN TREES; TITLE Tb7850; LINK TAXA = TaxaForAnalysisStep3077; TREE Fig._3b = [&R] (((((Dicellarius_atlanta,(Dicellarius_talapoosa_talapoosa,Thrinaxoria_lampra)),Dicellarius_bimaculatus_fictus),(Pachydesmus_crassicutis_laticollis,Pachydesmus_crassicutis_incursus)),Thrinaxoria_bifida),((((((((((Prionogonus_divergens,(Sigmoria_australis,Furcillaria_convoluta)),(Croatania_catawba,Croatania_simplex)),(((((((((Deltotaria_philia,Deltotaria_lea),Deltotaria_brimleii_brimleii),Sigmoria_nigrimontis_nigrimontis),Falloria_nantahalae),((((((((Brachoria_sp._71,Brachoria_ochra),(Brachoria_enodicuma,Brachoria_glendalea)),((Brachoria_laminata,Brachoria_splendida),Brachoria_hubrichti)),((Brachoria_initialis,Brachoria_cedra),(Brachoria_electa,Brachoria_indianae))),(((((Brachoria_sp._220,(Brachoria_insolita,Brachoria_mendota)),((Brachoria_separanda_calcaria,(Brachoria_separanda_versicolor,Brachoria_ligula)),Brachoria_separanda_hamata)),(Brachoria_eutypa_eutypa,Brachoria_sp._282)),(Brachoria_falcifera,(Brachoria_turneri,Brachoria_eutypa_ethotela))),(Brachoria_hoffmani,Brachoria_dentata))),(Brachoria_sp._296,Brachoria_separanda_separanda)),(((Rudiloria_trimaculata_kleinpeteri,Rudiloria_trimaculata_trimaculata),Rudiloria_mohicana),(Dixioria_pela_coronata,Dixioria_dactylifera))),(Apheloria_montana,Apheloria_tigana))),Sigmoria_rubromarginata),(Falloria_prolata,Sigmoria_latior_latior)),(Cleptoria_arcuatus,Sigmoria_quadrata)),(Cleptoria_sp._389,Cleptoria_rileyi))),Brevigonus_shelfordi),(Dynoria_medialis,Dynoria_icana)),(Furcillaria_laminata,Furcillaria_aequalis)),(Pleuroloma_plana,Pleuroloma_flavipes)),(Nannaria_austricola,Nannaria)),(Cherokia_georgiana_latassa,Cherokia_georgiana_georgiana)),(((Boraria_stricta,Boraria_infesta),Rhysodesmus_agrestis),Rhysodesmus_Querteraro))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4631] END;