#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 21, 2025; 6:26 GMT TreeBASE (cc) 1994-2008 Study reference: Yokoyama E., Arakawa M., Yamagishi K., & Hara A. 2006. Phylogenetic and structural analyses of the mating-type loci in Clavicipitaceae. FEMS Microbiology Letters, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1627] [ The following blocks are input data for analysis step 3189 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3189; DIMENSIONS NTAX=27; TAXLABELS Berkelella_stilbigera Claviceps_panicoidearum Claviceps_paspali Claviceps_purpurea Claviceps_sorghicola CordyCeps_takaomontana Cordyceps_bassiana Cordyceps_brongniartii Cordyceps_chlamydosporia Cordyceps_militaris Cordyceps_sinclairii Cordyceps_subsessilis Ephelis_japonica Epichloe_typhina Gibberella_fujikuroi Gibberella_zeae Isaria_cateniannulata Isaria_farinosa Isaria_fumosorosea Lecanicillium_muscarium Lecanicillium_psalliotae Metarhizium_anisopliae Neotyphodium_uncinatum Paecilomyces_carneus Paecilomyces_marquandii Pochonia_suchlasporia Verticillium_fungicola ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3509] TITLE 'MAT1-1-1'; LINK TAXA = TaxaForAnalysisStep3189; DIMENSIONS NCHAR=133; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 ] [ . . . . . . . . . . . . . ] Berkelella_stilbigera TTTCATGGCTTTCCGCAGCTACTACCTCAAATTGTTCCCCGACGTTCCCCAAAAGGCTGCTTCCGGTTTTCTAACAACACTTTGGAATAAGGATCCGTTCCGAAACAAATGGGCTCTAATCGCGAAAGTTTAT Claviceps_panicoidearum TTTCATGGCATTCCGGAGTTATTATTTAAAGCTTTGGCCGGACCAGCAGCAAAAGACTGCGTCTGGCTTTCTCACAACGCTTTGGAACAGAGATCCATTCCGAAACAAATGGGCACTAATTGCCAAAGTCTAC Claviceps_paspali ATTCATGGCATTCCGCAGCTATTACCTGAAACTTTGGCCGGACCAGCAACAAAAGACTGCTTCTGGCTTCCTCACAACCCTTTGGAATAGGGATCCCTTTCGAAACAAATGGGCATTGATTGCTAAAGTTTAT Claviceps_purpurea TTTCATGGCATTTAGAAGCTATTATGCAAATCTTTGGCCTGAGCAGCAACAAAAGATCTCATCTGGCTGCCTGACAAGCCTCTGGAACAAAGATCCCTGTCGAAACAAATGGGTCTTGATTGCTAAGGTGTAC Claviceps_sorghicola TTTCATGGCATTCCGGAGTTATTATTTAAAGCTTTGGCCGGACCAGCAGCAAAAGACTGCGTCTGGCTTTCTCACAACGCTTTGGAATAGAGATCCATTTCGAAACAAATGGGCACTAATTGCCAAAGTCTAC CordyCeps_takaomontana TTTCATCGCTTTCAGAAGTTATTATGTGAAACTATTCCCAGAATCGCAGCAGAAGGCAGCATCAGGCTTTCTTACCACACTCTGGAGTAAAGACCCATATAGGAACCGCTGGGCAATGATTGCGAAAGTCTAT Cordyceps_bassiana TTTCATTGCATTTAGAAGCTATTACGTGAAACTATTTCCAGAGTCGCAGCAAAAGGCCGCGTCAGGCTTTCTCACTACGCTCTGGAGCAAAGACCCGTTCAGAAACCGCTGGGCAATGATCGCGAATGTCTAT Cordyceps_brongniartii TTTCATTGCATTTAGAAGCTATTACGTGAAACTATTCCCAGAGTCGCAGCAAAAGGCCGCGTCGGGCTTTCTCACTACGCTCTGGGGCAAAGACCCGTTCAGAAACCGCTGGGCAATGATCGCGAAGGTCTAT Cordyceps_chlamydosporia TTTCATGGCATTCCGAAGCTACTACCTCAAATTATTTCCTGATGTCCAGCAAAAGACGGCCTCAGGATTCCTCACAACCCTATGGAACAAGGATCCCTTCCGAAATAAATGGGCTTTGATCGCGAAAGTCTAT Cordyceps_militaris TTTCATCGCATTCAGAAGCTACTACGTGAAACTATTTCCAGAGTCGCAACAAAAGGCGGCGTCCGGCTTTCTCACGACACTCTGGAATAAAGACCCGTTCAGAAATCGCTGGGCAATGATCGCGAAGGTATAT Cordyceps_sinclairii TTTTATCGCCTTCAGAAGTTATTATGTGAAACTATTCCCAGAATCGCAGCAGAAGGCAGCATCCGGCTTTCTTACCACGCTCTGGAGCAAAGACCCATATAGGAACCGCTGGGCAATGATCGCGAAAGTCTAT Cordyceps_subsessilis TTTCATGGCATTCCGAAGCTACTACCTGAAGCTCTTCCCCGACTTCCAGCAAAAGACTGCGTCCGGATTTCTCACTACTCTGTGGAACAAAGACCCATTCAGAAGCAAGTGGGCCTTGGTTGCCAAGGTGTAT Ephelis_japonica ATTCATGGCTTTCCGCAGTTACTATCTAAAGCTTTGGCCAGACCAACAGCAAAAGACAGCTTCTGGCTTTTTGACCACTCTTTGGAATAAGGAACCCTTCAGAAACAAATGGGCATTGATTGCCAAAGTCTAT Epichloe_typhina TTTCATGGCTTTCCGCAGTTACTATCTAAAACTTTGGCCGGACCAGCAACAAAAAACCGCTTCCGGCTTCCTCACAACCCTTTGGAACAGAGATCCTTTTCGAAACAAATGGGCCTTGATTGCCAAAGTCTAC Gibberella_fujikuroi CTTCATGGCCTTTCGCACCTACTATCTGAAGCTATTCCCCGACACCCAGCAGAAGAATGCCTCCGGTTTCCTGACTCAGCTCTGGGGCGGCGACCCTCACCGAAGCAAATGGGCCCTGATTGCTAAAGTCTAT Gibberella_zeae CTTCATGGCCTTTCGAACCTACTACTTGAAGCTGTTCCCCGATACTCAGCAGAAGGACGCTTCTGGTTTTTTGACTCAGCTCTGGGCTACAGACCCCAATCGAAACAAATGGGCCCTAATTGCTAAGGTTTAC Isaria_cateniannulata TTTCATCGCCTTCAGAAGTTATTACGTGAAACTATTCCCAGAGTCGCAGCAGAAGGCAGCGTCTGGCTTTCTCACCACACTCTGGAGTAAAGACCCGTTCAGGAATCGATGGGCAATGATTGCGAAAGTCTAT Isaria_farinosa TTTCATTGCCTTCAGAAGTTATTACGTGAAACTATTCCCAGAGTCGCAGCAAAAGGCGGCGTCCGGCTTCCTCACCACACTCTGGGGAAGAGACCCATTCAGGAACCGCTGGGCAATGATTGCGAAGGTATAT Isaria_fumosorosea TTTCATCGCCTTCAGAAGTTACTATGTGAAGCTATTCCCAGAATCACAGCAGAAGGCAGCATCCGGCTTTCTCACCACGCTCTGGAGTAAAGACCCATTCAGGAACCGCTGGGCAATGATTGCTAAAGTCTAT Lecanicillium_muscarium TTTCATTGCTTTTCGAAGTTACTACGTGAAACTATTTCCGGAGTCGCAGCAAAAGGCGGCCTCGGGCTTCCTCACCACGCTCTGGGGTAAAGACCCATTCAGGAACCGCTGGGCAATGATTGCGAAGGTCTAT Lecanicillium_psalliotae ATTTATTGCTTTTCGAAGTTTCTACGTAAAGCTTTTCCCCGCCTCTCAACAAAAAGCTGCGTCTGGCTTTCTCACCACGCTCTGGAAGCAAGATCCTTTCAGGAACCGCTGGGCATTGATTGCCAAAGTCTAT Metarhizium_anisopliae CTTCATGGCATTTCGCAGTCATTATTTAAAACTGTTCCCCGACGTACAACAAAAGAGTGCATCTGGCTTCCTAACGACTCTCTGGAATAAGGATCCGTTTCGAAACAAATGGGCACTCATTGCCAAAGTTTAT Neotyphodium_uncinatum TTTCATGGCTTTCCGCAGTTACTATCTAAAACTTTGGCCGGACCAGCAACAAAAAACCGCTTCCGGTTTCCTTACAACCCTTTGGAACAGAGATCCTTTTCGAAACAAATGGGCCTTGATTGCCAAAGTCTAC Paecilomyces_carneus TTTCATGGCCTTCCGTAGTTACTATCTCAAACTATTTCCCGATGTTCAACAAAAGACAGCCTCTGGGTTCCTAACAAAACTTTGGAACAAAGATCCGTTCCGAAACAAATGGGCACTGATTGCAAAAGTGTAC Paecilomyces_marquandii TTTCATGGCTTTTCGAAGTTACTATCTCAAGCTTTTTCCCGATGTTCAGCAGAAAACTGCCTCCGGATTCCTCACGACCCTCTGGAATAAGGACCCGTATCGAAACAAATGGGCGCTGATCGCTAAGGTTTAT Pochonia_suchlasporia GTTCATGGCATTTCGCAGTTACTATCTGAAGCTATTCCCCGACCTTCAGCAGAAGACTGCCTCTGGCTTTCTTACGACCCTCTGGAATAAAGATCCATTTCGTAACAAATGGGCCCTAATTGCCAAAGTTTAC Verticillium_fungicola TTTCATAGCCTTCCGAAGCTTCTACCTGAGACTATTCCCGCAGGCACAGCAAAAGGCGGCGTCCGGCTTCCTCACCACCCTCTGGAACAAGGACCCCTGCAGACATCGATGGGCTTTGATTGCAAAAGTCTAT ; END; [ The following blocks are output data for analysis step 3189 ] BEGIN TREES; TITLE Tb7962; LINK TAXA = TaxaForAnalysisStep3189; TREE Fig._2 = [&R] ((((((((Cordyceps_sinclairii,CordyCeps_takaomontana),Isaria_fumosorosea),Isaria_cateniannulata),(Cordyceps_bassiana,Cordyceps_brongniartii),Cordyceps_militaris,Isaria_farinosa,Lecanicillium_muscarium),Lecanicillium_psalliotae),Verticillium_fungicola),Cordyceps_subsessilis,Metarhizium_anisopliae,Berkelella_stilbigera,Cordyceps_chlamydosporia,Pochonia_suchlasporia,Paecilomyces_carneus,Paecilomyces_marquandii,(Ephelis_japonica,(Epichloe_typhina,Neotyphodium_uncinatum),(Claviceps_panicoidearum,Claviceps_sorghicola),Claviceps_paspali,Claviceps_purpurea))Clavicipitaceae,(Gibberella_fujikuroi,Gibberella_zeae)Nectriaceae); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr326] END;