#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 11, 2025; 21:38 GMT TreeBASE (cc) 1994-2008 Study reference: Syring J., Castillo R., Cronn R., & Liston A. 2006. Multiple nuclear loci reveal the distinctiveness of the threatened, neotropical Pinus chiapensis (Pinaceae). Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1631] [ The following blocks are input data for analysis step 3197 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3197; DIMENSIONS NTAX=33; TAXLABELS Pinus_ayacahuite_01S1 Pinus_ayacahuite_03S2 Pinus_ayacahuite_04S2 Pinus_ayacahuite_09S1 Pinus_ayacahuite_12S1 Pinus_ayacahuite_15S1 Pinus_bungeana Pinus_chiapensis_01KF Pinus_chiapensis_02 Pinus_chiapensis_03S4 Pinus_chiapensis_35S1 Pinus_chiapensis_38S1 Pinus_chiapensis_39S1 Pinus_chiapensis_41S1 Pinus_gerardiana Pinus_monticola_01S1 Pinus_monticola_01S2 Pinus_monticola_02S3 Pinus_monticola_04S1 Pinus_monticola_04S4 Pinus_monticola_05S1 Pinus_monticola_06S1 Pinus_monticola_07S1 Pinus_monticola_13S1 Pinus_monticola_16S1 Pinus_squamata Pinus_strobus_02S1 Pinus_strobus_03S1 Pinus_strobus_04S1 Pinus_strobus_05S1 Pinus_strobus_11S2 Pinus_strobus_22S3 Pinus_strobus_26N ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3511] TITLE 'LEA-like'; LINK TAXA = TaxaForAnalysisStep3197; DIMENSIONS NCHAR=990; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=- GAP= #; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Pinus_ayacahuite_01S1 AATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAATAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGACCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTCTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGG----------------- Pinus_ayacahuite_03S2 -ATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCAGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAATAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGACCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTATATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTCTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATAT-GACTATACAT- Pinus_ayacahuite_04S2 -ATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTTCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAATAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGACCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTCTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATAT-GACTATACAT- Pinus_ayacahuite_09S1 AATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCAGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAATAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGACCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTATATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTCTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATAT-GACTATACATG Pinus_ayacahuite_12S1 AATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCAGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAATAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGACCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTATATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTCTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATAT-GAC-------- Pinus_ayacahuite_15S1 AATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCAGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAATAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGACCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTATATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTCTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATAT-GACTATACATG Pinus_bungeana AATTTCTTTATCACTTTTTTCTTCAAGCTGAGTCTAGTCCAGTGTTAGGCCCAATTTCCATTACCCCAATCTCCAATGGAAGAATGGATCAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAATG------------------CCCAACTGTGTAGCTCAACTTAAGGATCCTGTTAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCCAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACGGTGTAGCCC--------------------------CTTTGTAGCGT-AACTGGAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTGTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGTCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTT-GTTAAACCCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTAATGAATT-CTTTCAGCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGC-------------------------------------------------------CTGATTAATCTGT-----------------------------------------GATCAGAGAAATAGCGTCTGGAACAATTTTAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_chiapensis_01KF -ATTTCTTTATTACTTTTTTCTTCAAGCTGAGTCTAGGCTAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGATCAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCA---------TCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGACAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTATTGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGAAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTCTTTATTACTATGTTAACCTTTTTT-GTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGC-------------------------------------------------------CTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATAT-GACTATACAT- Pinus_chiapensis_02 -ATTTCTTTATTACTTTTTTCTTCAAGCTGAGTCTAGGCTAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGATCAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCA---------TCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGACAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTATTGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGAAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTCTTTATTACTATGTTAACCTTTTTT-GTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGC-------------------------------------------------------CTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATAT-GACTATACAT- Pinus_chiapensis_03S4 AATTTCTTTATTACTTTTTTCTTCAAGCTGAGTCTAGGCTAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGATCAATTTCCATTTCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCA---------TCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGACAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTATTGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGAAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTCTTTATTACTATGTTCACCTTTTTT-GTTAATCTCTGCGCATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGC-------------------------------------------------------CTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGTAGGGATTGGGATATTGACTATACATG Pinus_chiapensis_35S1 AATTTCTTTATTACTTTTTTCTTCAAGCTGAGTCTAGGCTAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGATCAATTTCCATTTCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCA---------TCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGACAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTATTGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGAAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTCTTTATTACTATGTTCACCTTTTTT-GTTAATCTCTGCGCATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGC-------------------------------------------------------CTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGTAGGGATTGGGATATTGACTATACATG Pinus_chiapensis_38S1 AATTTCTTTATTACTTTTTTCTTCAAGCTGAGTCTAGGCTAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGATCAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCA---------TCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGACAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGACCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTATTGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGAAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTCTTTATTACTATGTTAACCTTTTTT-GTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGC-------------------------------------------------------CTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGCCAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATA---- Pinus_chiapensis_39S1 AATTTCTTTATTACTTTTTTCTTCAAGCTGAGTCTAGGCTAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGATCAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCA---------TCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGACAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTATTGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGAAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTCTTTATTACTATGTTAACCTTTTTT-GTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGC-------------------------------------------------------CTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATA---- Pinus_chiapensis_41S1 AATTTCTTTATTACTTTTTTCTTCAAGCTGAGTCTAGGCTAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGATCAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCA---------TCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGACAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTATTGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGAAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTCTTTATTACTATGTTAACCTTTTTT-GTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGC-------------------------------------------------------CTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATA---- Pinus_gerardiana AATTTCTTTATTACTTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTACCCCAATCTCCAATGGAAGAATGGATCAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCCAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCC--------------------------CTTTGTAGCGT-AACTGGAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTGTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGTCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTT-GTTAAACTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAATGATATATTCCATTCATAATTGCAATATTGGACTCGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCCTGA--------T-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTTTAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGATGTTGGAAGGGATTGGGATATTGACTATAC--- Pinus_monticola_01S1 -------------------------------------------------------------------AATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT----------------------------------------CAACAT---TGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATG-------------------------------------- Pinus_monticola_01S2 AATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAACATTGTGTAGCCCAACTGTCAACATTGTGTAGCCCAACTGT-----------------------------------------------------------------ATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_monticola_02S3 -ATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT----------------------------------------CAACAT---TGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_monticola_04S1 ---------------------------------------------------------------------TCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCTTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCAAACTGT----------------------------------------CAACAT---TGTGTAGCCAAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTGTGTAGACCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAAGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTT-GTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_monticola_04S4 AATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGCGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCCTGTGTAACCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_monticola_05S1 AATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT----------------------------------------CAACAT---TGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_monticola_06S1 AATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_monticola_07S1 AATTTCTTTATTAATTTTTTCTTCAAGCTGAGTCTAGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT----------------------------------------CAACAT---TGTGTAGCCCAACTGTATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAGGGCAGGAATTGGAATTTTTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTAATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATATCATTCATGATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATAGTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_monticola_13S1 AATTTCTTTATTACTTTTTTTTTCAAGCTGAGTCTAGGCCATTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCTTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT-----------------------------------------------------------------ATGATCCTTTTGTGTGGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTGTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTATAGGATCCTGTCAACAAGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTT-GTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATATTCCATTAATAATTGCCT-----ATTTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_monticola_16S1 AATTTCTTTATTACTTTTTTCTTCAAGCTGAGTCTAGGCCATTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT-----------------------------------------------------------------ATGATCCTTTTGTGTAGCCCCTTTGTAGC----------GGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTCTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAAGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTT-GTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATTTCTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATAC--- Pinus_squamata AATTTCTTTATTACTCTTTTCTTCAAGCTGAGTCTGGGCCAGTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGAATGGATCAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGAGCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTGAACTCTAGGATCCTGTCAACAGGACTATATAGCCCTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCCAACTGTCAACATTGTGTAGCCCAACTGTACGATCCTGTCAACTGTGTAGACCAATTGTAGGATTCTGTCAACAGGACTGTGTAGCCCAACTGTATGATCCTTTTGTGTCGCCCCTTTGTAGCTT-AACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTTTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTGTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGTCTAACTGTAGGATCCTGTCAACAGGGCAGCAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTT-GTTAAACTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAATGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAATGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCCTGATTAATCTGTTTCAGTGATATATTCCATTCATAATTGCCTGATTAATCTGTGAGCAGAGAAATAGCGTCTGGAACAATTTTAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_strobus_02S1 -ATTTCTTTATTACTCTTTTCTTCAAGCTGAGTCTAGGCCATTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCCTTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCTTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT-----------------------------------------------------------------ATGATCCTTTTGTGTAGACCCTTTGTAGCCC-AACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTGTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAAGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTCGTGAATTCTTTTAGTTTCAGTAATATATTCCATTCATAATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_strobus_03S1 -ATTTCTTTATTACTCTTTTCTTCAAGCTGAGTCTAGGCCATTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCTTGTGTAGC-----------------CCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT-----------------------------------------------------------------ATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGGACTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTGTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAAGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGA-GAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTAATATATTCCATTCATAATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_strobus_04S1 AATTTCTTTATTACTCTTTTCTTCAAGCTGAGTCTAGGCCATTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCTTGTGTAGC-----------------CCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT-----------------------------------------------------------------ATGATCCTTTTGTGTAGCCCCTTTGTAGCTTTAACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGGACTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTGTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAAGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGA-GAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTTGTGAATTCTTTTAGTTTCAGTAATATATTCCATTCATAATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_strobus_05S1 --------TATTACTCTTTTCTTCAAGCTGAGTCTAGGCCATTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCTTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT-----------------------------------------------------------------ATGATCCTTTTGTGTAGCCCCTTTGTAGCCC-AACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTGTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAAGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTCGTGAATTCTTTTAGTTTCAGTAATATATTCCATTCATAATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_strobus_11S2 AATTTCTTTATTACTCTTTTCTTCAAGCTGAGTCTAGGCCATTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCCTTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCTTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT-----------------------------------------------------------------ATGATCCTTTTGTGTAGCCCCTTTGTAGCCC-AACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTGTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAAGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTCGTGAATTCTTTTAGTTTCAGTAATATATTCCATTCATAATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTGACTATACATG Pinus_strobus_22S3 AATTTCTTTATTACTCTTTTCTTCAAGCTGAGTCTAGGCCATTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCTTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT-----------------------------------------------------------------ATGATCCTTTTGTGTAGCCCCTTTGTAGCCC-AACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCAACTGTAGGATCATGTCAACAGGACTGTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAAGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTCGTGAATTCTTTTAGTTTCAGTAATATATTCCATTCATAATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAATATCATGAAAGACGTTGGAAGGGATTGGGATATTG---------- Pinus_strobus_26N AATTTCTTTATTACTCTTTTCTTCAAGCTGAGTCTAGGCCATTGTTAGCCCCAATTTCCATTGCCCCAATCTCCAATGGAAGGATGGAACAATTTCCATTGCCGCAATCTCCAATGGAAGAATGGATCTCCAGTGGAAGAACGATTTGCTATGCCCAACTGTGTAGCTCAACTTTAGGATCCTGTCAACAGGACTATATAGCCTTGTGTAGCCCTAACTGTACGGTGCTCCTGTCAATATTGTGTAGCCAAACTGTCAACATTGTGTAGCCCAACTGT-----------------------------------------------------------------ATGATCCTTTTGTGTAGACCCTTTGTAGCCC-AACTGTAGGATCCTTTCCACAGGACTGTGTAGCCCAACTGTAGGATCCTCTTTTGTAGCCCTGTGTAGCCA-CTGTAGGATCATGTCAACAGGACTGTGTAGCCCAACTGTCCTGTCAATAGGTCTGTGTTGCCTAACTGTAGGATCCTGTCAACAAGGCAGGAATTGGAATTTCTTTATTACTTTGTTCACCTTTTTTTGTTAATCTCTGCACATCGAAGAAATTACCTACTGCAATATTGGATTTATGAATT-CTTTT-------AGTTTCAGTGATATATTCCATTCATAATTGCAATATTGGACTCGTGAATTCTTTTAGTCTCAGTAATATATTCCATTCATAATTGCAATATTGGATTTATGAATTCTTTTAGTTTCAGTGATATATTCCATTCATAATTGCCTGATTGATCTGT-----------------------------------------GAGCAGAGAAATAGCGTCTGGAACAATTGCAGATCCTGGGTCAGTGAAAGCCAATGACAAGACGGGCATGATCATTCCAGTGACAGTGCCTTACGACTTTTTGCTGAACATCATGAAAGACGTTGGAAGAGATTGGGATATTGACTATACATG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'LEA-like') = N: 1-990; CODONPOSSET CodonPositions (CHARACTERS = 'LEA-like') = N: 1-990; END; [ The following blocks are output data for analysis step 3197 ] BEGIN TREES; TITLE Tb7970; LINK TAXA = TaxaForAnalysisStep3197; TREE Fig._3 = [&R] (((Pinus_bungeana,Pinus_gerardiana),Pinus_squamata),((((((((Pinus_strobus_02S1,Pinus_strobus_11S2),Pinus_strobus_26N),(Pinus_strobus_22S3,Pinus_strobus_05S1)),Pinus_strobus_03S1),((Pinus_monticola_04S1,Pinus_strobus_04S1),Pinus_monticola_13S1)),Pinus_monticola_16S1),((((Pinus_ayacahuite_01S1,Pinus_ayacahuite_04S2,(Pinus_ayacahuite_15S1,Pinus_ayacahuite_12S1,Pinus_ayacahuite_09S1,Pinus_ayacahuite_03S2)),Pinus_monticola_04S4,Pinus_monticola_06S1),(Pinus_monticola_07S1,Pinus_monticola_05S1,Pinus_monticola_02S3,Pinus_monticola_01S1)),Pinus_monticola_01S2)),((Pinus_chiapensis_01KF,Pinus_chiapensis_02,Pinus_chiapensis_38S1,Pinus_chiapensis_39S1,Pinus_chiapensis_41S1),(Pinus_chiapensis_03S4,Pinus_chiapensis_35S1)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr766] END;