#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 11:23 GMT TreeBASE (cc) 1994-2008 Study reference: Dentinger B., & Mclaughlin D. 2006. Reconstructing the Clavariaceae using nuclear large subunit rDNA sequences and a new genus segregated from Clavaria. Mycologia, 98(5): 746-762. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1699] [ The following blocks are input data for analysis step 3356 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3356; DIMENSIONS NTAX=18; TAXLABELS Auriscalpium_vulgare Cantharellopsis_prescotii Clavaria_nebulosoides Clavaria_purpurea_BD299 Clavaria_purpurea_DJM1334 Clavulina_cristata Cotylidia_alba Cotylidia_aurantiaca Cotylidia_diaphina Hyphodontia_radula Omphalina_brevibasidiata Omphalina_marchantiae Omphalina_rosella Ramaria_eumorpha Resinicium_bicolor Rickenella_mellea Rickenella_pseudogrisella Trichaptum_abietinum ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M914] TITLE Hymenochaetoid_clade_28S_rDNA; LINK TAXA = TaxaForAnalysisStep3356; DIMENSIONS NCHAR=896; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Auriscalpium_vulgare TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCG-GTCTCTGGCCGTCCGAGTTGTAGT-CTGGAGAAGTGTTTTCCGCGCTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTCATAGAGGGTGAGAATCCCGTC-TTTGACACGGAC-TACCAGTGCTC-TGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTGAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACACTTGAAGTCAGTCGCGTTCCTCGAGACTCAGCCTTGCCTTCCGGCCTGGTGTACTTCTCGTTG-AACGGGCCAGCATCAATTTTGAT-CGTCGGATAAAGGCGGGAGGAAGGTGGCACCCCTCGGGGTGTGTTATAGCCTCTCGTCACATACGACGGTTGGGATTGAGGACCGCAGCACGCCTTTATGGTCGGGG--TTCGCCC-ACGTT-CGTGCTTAGGATGCTGGCGTAATGGCTTTAAATGACCNGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTCGGGTGGA-AAACCCGTGCGCGTAATGAAAGTGAAA-GTTGGGACCTC-TGTCGTGGAGGG-CACCGACGCCCGGACCAGACCTTCTGTGACGGATCTGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Cantharellopsis_prescotii TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCA--GTTTAGGCTGTCCGAGTTGTAAT-CTGGAGAAGTGTTTTCCGTGTTGGACCGTGCAAAAGTCTCTTGGAATAGAGCATCATAGAGGGTGAGAATCCCGTC-TTTGGCACGGAC-TACCAATGCTT-TGTGATACGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCGTCCGGGACTCAGCCTTGC--TTCTGCTTGGTGTACTTCCCGGTT-GACGGGCCAACATCGATTTTTGC-TGGTGGAAAAAGGTGGGGGGAATGTGGCACCTTT--TGGTGTGTTATAGCCCCTCATTGTATGCATCAGCGGGGATCGAGGACCGCAGCACGCCC-TTGTGGCCGGG--TTCGCCC-ACGTAACGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTAGGGTGAT-AAACCCTTGCGCGTAATGAAAGTGAAA-GTTGGGATCCT-TGTCATGGGGAG-CACCGACGCCCGGCCTTGAACTTCTGTGACGGCGCCGCGGTGGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Clavaria_nebulosoides TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGACGTGTCTTTGGCCGTCCGAGTTGTAAT-CTGGAGAAGTGTTTTCTGTGTTGGACCGTGTACAAGTCCCTTGGAATAGGGCGTCATAGAGGGTGAGAATCCCGTC-TTTGACACGGAC-TACCAATGCTC-TGTGATACGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCGTCCGGGACTCAGCCTTGC--TTTTGCTCGGTGTACTTCCTGGTT-GACGGGTCAACATCGATTTTGGT-CGGCGGACAATGGTGGGGGGAATGTGGCACCTTT--GGGTGTGTTATAGCCTCCCGTCGGACGCGTCGACTGGGATCGAGGACCGCAGCACGCCTTTTTGGCCGGGG--TTCGCCC-ACGTAACGTGCTTAGGATGTTGGCATAATGGCTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTAGGGTGGT-AAACCCTTGCGCGCAATGAAAGTGAAA-GTTGGGACCTC-TGTCATGGGGGG-CACCGACGCCCGGCCTTGAACTTCTGTGACGGTGCCGCGGTGGAGCATGCATGTTGGGACCCGAAAGATGGTGAACTATGCCNGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGNGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Clavaria_purpurea_BD299 TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGACGTGTCTTTGACCGTCCGAGTTGTAAT-CTGGAGAAGTGTTTTCTGTGTTGGACCGTGTACAAGTCCCTTGGAATAGGGCGTCATAGAGGGTGAGAATCCCGTC-TTTGACACGGAC-TACCAATGCTC-TGNGATACGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCGTCCGGGACTCAGCCTTGC--TTTTGCTCGGTGTACTTCCTGGTT-GACGGGTCAACATCGATTTTGGT-TGGCGGACAATGGTGGGGGGAATGTGGCACCTTT--GGGTGTGTTATAGCCTCCCGTCGGACGCGTCGACTGGGATCGAGGACCGCAGCACGCCTTTTTGGCCGGGG--TTCGCCC-ACGTAACGTGCTTAGGATGTTGGCATAATGGCTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTAGGGTGGC-AAACCCTTGCGCGCAATGAAAGTGAAA-GTTGGGACCTC-TGTCATGGGGGG-CACCGACGCCCGGCCTTGAACTTCTGTGACGGTGCCGCGGTGGAGCATGCATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Clavaria_purpurea_DJM1334 TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGACGTGTCTTTGGCCGTCCGAGTTGTAAT-CTGGAGAAGTGTTTTCTGTGTTGGACCGTGTACAAGTCCCTTGGAATAGGGCGTCATAGAGGGTGAGAATCCCGTC-TTTGACACGGAC-TACCAATGCTC-TGTGATACGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCGTCCGGGACTCAGCCTTGC--TTTTGCTCGGTGTACTTCCTGGTT-GACGGGTCAACATCGATTTTGGT-CGGCGGACAATGGTGGGGGGAATGTGGCACCTTT--GGGTGTGTTATAGCCTCCCGTCGGACGCGTCGACTGGGATCGAGGACCGCAGCACGCCTTTTTGGCCGGGG--TTCGCCC-ACGTAACGTGCTTAGGATGTTGGCATAATGGCTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTAGGGTGGT-AAACCCTTGCGCGCAATGAAAGTGAAA-GTTGGGACCTC-TGTCATGGGGGG-CACCGACGCCCGGCCTTGAACTTCTGTGACGGTGCCGCGGTGGAGCATGCATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Clavulina_cristata TTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAAATTTAAAATCTGGCA-GTCTTTGGTTGCCCGAATTGTAAT-CTAGAGAAGCGTTTTCCGTGCTGGACTGTGTACAAGTTTCCTGGAACGGAACATCATAGAGGGTGAGAATCCCGTC-CTTGACACAGAC-CCCCAGTACTTTTGTGATGCGCTCTCGACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAATGGGAGGTAAATTCCTTCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTAAAAGGGAAACGCTTGAAGTCAGTCACGTTTGCTTGGACTCAGCCTT{AT}C--TTCGGTTTGGTGCATTTCCTTGCA-GACGGGCCAGCGTCCATGTTGTT-TGCCGGAGAAGGGGTGAGAGAATGTGGCTCCTTT--GGGAGTGTTATAGCTCTTGCTCGTATGCGGGGAATGATATGGAGTGGTACAGCAC--------------------------ACTTT-GGTGGTGCTTGTGCTGGCATAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTCTGCGAGTGTTTGGGTGGA-AAACCCGGGTGCGTAATGAAAGTGATG-GCTGGGAACCC-CTTTTGGGAGG--CACCGGCGCCCCGAGCTGACCTTCTGTGACGCATCGGAGGCAGAGCATACATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Cotylidia_alba TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCA---GTTTCACTGTCCGAGTTGTAAT-CTGGAGAAGCATTTTCCGTGCTGGACTGTATACAAGTCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTC-TTTGATACAGAC-TACCAGTACTT-TGTGATATGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTATTGGGATTCAGCCTTGC--TTCTGCTTGGTGTACTTCCTAATG-GATGGGTCAACATCGATTTTGAC-CGGTGGATAAAGGTAAAGGGAATGTGGCACCTCC--GGGTGTGTTATAGCTCTTTATCACATGCATTGGTTGGGATCGAGGATCGCAGCATGCCTTTTTGGCCGGGG--TTCGCCC-ACGTACCATGCTTAGGATGTTGACATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTAGGGTGGT-AAACCCTTGCGCGTAATGAAAGTGAAA-GTTGGGACCTC-TGTCATCGAGGG-CACCGACGCCCGGCCTTGAACTTCTGTGACAGAGCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Cotylidia_aurantiaca TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCG---GTTTCACCGTCCGAGTTGTAATTCTGGAGAAGTGTTTTCCGTGCTGGACCGTGTACAAGTCTCTTGGAATAGAGCGTCATAGAGGGTGAGAATCCCGTC-TTTGACACGGAC-TACCAGTGCTT-TGTGATACACTTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTCCGGGACTCAGCCTTGC--CTTGGCTTGGTGTACTTCCTGGTT-AACGGGCCAACATCGATTTTGACCGGATGGATAAAGTTAGAGGGAATGTGGCACCTTT--GGGTGTGTTATAGCCCTCTATCATATGCGCCGGTTGGGATCGAGGACTGCAGCACGCCTTTATGGCCGAGG--GTAACC-TACGTACCGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTAGGGTGGT-AAACCCTTGCGCGTAATGAAAGTGAAA-GTTGGGACCTC-TGTCATGGAGGG-CACCGACGCCCGGCCTTGAACTTTTGTGACGGAGCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Cotylidia_diaphina TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCA--GCTT-CGCTGTCCGAGTTGTAAT-CTGGAGAAGCATTTTCCGTGCTGTACCGTGTACAAGTCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTC-TTTGACACGGAC-TACCAGTGCTT-TGTGATATGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTCCGGGACTCAGCCTTGC--TTCTGCTTGGTGTACTTCCTGGTT-GACGGGCCAACATCAATTTTGAT-CAGTGGATAAAGGCAGAGGGAATGTGGCACCTCC--GGGTGTGTTATAGCCCTTTGTCACATGCATTGGTTGGGATTGAGGACCGCAGCACGCCTTTT-GGCCGGGG--TTCGCCC-ACGTACCGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCAAGTGTTAGGGTGGT-AAACCCTTGCGCGTAATGAAAGTGAAA-GTTGGGACCTC-TGTCATGGAGGG-CACCGACGCCCGGCCTGAAACTTCTGTGACGGAGCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Hyphodontia_radula TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGACA---GTTTCACTGTCCGAGTTGTAAT-CTGGAGAAGCATTTTCCGCGTCGGACCGTGTACAAGTTTCTTGGAATAGAACGTCATAGAGGGTGAGAATCCCGTC-CATGACACGGAC-TACCGATGCTT-TGTGATATGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGTGAGGGANNNNNNNNNNCCTTGGAAAGAGAGTTAA{AC}CAGTACGTGAAATTGTTGAAAGGGAAACGCCTGAAGTCAGTCCCGTTGGCAGAGACTCAGC--TGC--TT--GCAT-GTGTACT-CTCAGTT-AACGGGTCAACATCAATTTCAGT-TGGTGGATAAAGGC-ATTGGAATGTGGCAC-TTC---GGTGTGTTATAGACCTCTGTCGCATACACTGACC-GGATTGAGGAACGCAGCACGCCACTAAGGCCAGGG-ATCCGTCCCATGTAACGTGCTTAGGATGTTGGCATAATGGCTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTAGGGTGGA-AAACCCTTGTGCGTAATTAACGTGAAA-GTTGGGACC---TCTTGC-GAGGG-CACCGACGCCCGGCCCTGAAGTTTACTGACGGCGCTGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG-TGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGG-TATAGGG-CGAAAG-CTA-TCG Omphalina_brevibasidiata TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGTG---GTTACGCCGCCCGAGTTGTAAT-CTGGAGAAGTGTTTTCCGTGTTGGACCGTGTACAAGTCTCTTGGAACGGAGCGTCATAGAGGGTGAGAATCCCGTC-TTTGACACGGAC-TACCAATACTT-TGTGATACGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTCTGGGACTCAGCCTGGC-TATCCGCTTGGTGTACTTCCTGGGT-GACGGGCCAACATCGATTTTGGT-CGGCGGATAAAGGTGGGGGGAATGTGGCATCTTC--GGATGTGTTATAGCCCCCTGTCGGATGCGTCGGCTGGGATCGAGGATCGCAGCACGCCTTTTTGGCCGGGG--TTCGCCC-ACGTAACGTGCTTAGGATGTTGGCATAATGGCTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTAGGGTGGA-AAACCCTTGCGCGTAATGAAAGTGAAA-GTTGGGACCCT-TGTCATGGGGGG-CACCGACGCCCGGCCTTGAACTTCTGTGACGGCGCCGCGGTGGAGCATGCATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Omphalina_marchantiae TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCG--GTTAACTCCGTCCGAGTTGTAAT-CTGAAGAAGCATTTTCGATGCCAGCCCGTGTACAAGTCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTC-CATGGCACGGACATNCTGGTGTCA-TATGATATGCTTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCAAGAAACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCACATTGGCCGGGACTCAGCCGCGACTTTGGTCTTGGTGTACTTCCTGGTT-GATGGGTCAATATCTATTTTGGT-CGACGGATAAATTCGGCTTGAATGTAGCACCCTTTTGGGTGTGTTATAGCTTGTCGTCTGATACGCCGACTGGGATTGAGGATCGCAGCACGCCCTTGTGGCCGGGG--TTCGCCC-ACGTATTGTGCTTAGGATATTGACATAATGACNTTAATCGACCCGTCTTGANACACGGNCCAAGGAGTCTAACATGCCTGCGAGTATTAGGGTGACTAAACCCTTGTGCGCAATGAAAGTGACA-GTTGGGACCC--TCTCAC-GAGGGGCACCGACGCCCGGCCTTGATCTTCTGTGACGGTGCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Omphalina_rosella TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCG--GTTTATGCCGTCTGAGTTGTAAT-CTGGAGAAGTGTTTTCTGTGTTGGACCGTGTACAAGTCTCTTGGAACAGAGCGTCGTAGAGGGTGAGAATCCCGTC-TTTGACACGGAC-TGCCAATGCTA-TGTGATACGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCAAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGTGTCGTCTGGGACTCAGCCTTGC--TTCTGCTTGGTGTACTTCCTGGTT-GACGGGCCAACATCGATTTTGAC-CAGTGGACAAAGACAAATGGAATGTGGCACCTTC--GGGTGTGTTATAGCCTTTTGTTGCATACGCTGGTTGGGATTGAGGACTGCAGCATGCCTTTTTGGCCGGGGCATTTGCCC-ACGTAACATGCTTAGGATGTTGGCATAATGGCTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTCGCGAGTGTTAGGGTGGT-AAACCCTTGCGCGTAATGAAAGTGAAA-GTTGGGACCTC-TGTCATGGAGGG-CACCGACGCCCGGCCTTGAACTTCTGTGATGGCGCCGAGGTAGAGCGCGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Ramaria_eumorpha TTCCCCTANTAACNGCGAGTGAAGCGGGAAGAGCTCNAANTTGTAATCTGGCG-GTCTCTGTCCGTCCGAGTTGTAGT-CTGGAGAAGCGTCTTCCTCGCCGGACCGTGTATAAGTCTCTTGGAAGNNGGCGTCATAGAGGGTGAGAATNCCGTC-TTCGACACGGAC-TACCGGTGCTT-TGTGATNCNCTCTCGAAGAGNCGAGNTGTTTGGGAATNCAGCTCAAAANGGGTGGTAAATTCCATCTAAAGCTAAATATTGTCGAGAGACCGATANCGAACAAGTACCGTGNGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATTGAAGTCAGTCGCGTCTCCCGGGACTCAGCCCCGC--TTCTGTGGGGTGCACTTCCCGGGGCGACGGGCCAGCATCGATTTCGAC-CGTCAGAGAAAGGTCGGGGGAATGTGGCACCTTC--GGGTGTGTTATAGCCCTCGGTCGCATGTGACGGTCGGGATCGAGGATCGCAGCACGCCTTCATGGCCGGGG--TTCGCCC-ACGTAACGTGCTTAGGATGCTGGCGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGA-AAACCCGGACGCGGAATGAAAGTGAAAGGTTGGGACCTC-TGTCGTGGAGGG-CACCGACGCCCGGACCAGACCTTCTGTGACGGTTCCGAGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAACTTGGGTATAGGGGCGAAAGACTAATCG Resinicium_bicolor TTCCCCTAGTAACTGCGAGTGAAGAGGGAAA-GCTCAAATTTAAAATCTGGCA--GCTTTGGCTGTCCGAGTTGTAAT-CTGGAGAAGTGTTTTCAGTGCAGGACCGTGTACAAGTCTCTTGGAATGGAGCATCATAGAGGGTGAGAATCCCGTC-TTTGACACGGAC-TACCTGTGCTT-TGTGATACACTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGGAGTCAGTCGCGTTTGTTAGAACTCAGC-TTGGC-TTCTGCTTAGTGTACTTTCTAATG-AACGGGCCAACATCGATTTCAGT-CAGTGGATAAGGGTAAGAGGAATGTGGCACCTTC--GGGTGTGTTATAGCCTCTTATCGTATACATTTACTGGGATCGAGGTCTGCAGCAC---TT----------------------------GTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTAGGGTGGT-AAACCCTTGCGCGTAATGAAAGTGAAA-GTTGGGACCTC-TGTCATGGGGGG-CACCGACGCCCGGTCCAGAACTTCTGTGACGGTACTGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Rickenella_mellea TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCG---GTTATGCCGNCCGAGTTGTAAT-CTGGAGAAGCGTTTTCCGTGTTGGACCGTGTACAAGTCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTC-TTTGACACGGAC-TACCAATGCTT-TGTGATACGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTCTGGGACTCAGCCTTGC--TTCTGCATGGTGTATTTCCTGGTT-AACGGGCCAACATCGATTTTGGT-CGGTGGATAAAGTCGAGAGGAATGTGGCACCTTC--GGGTGTGTTATAGCCTCTTGTCGGATGCATCGACTGGGATCGAGGATCGCAGCACGCCTTTTTGGCCGGGG--TTCGCCC-ACGTAACGTGCTTAGGATGTTGGCATAATGGCTNTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTAGGGTGGA-AAACCCTTGCGCGTAATGAAAGTGAAA-GTTGGGACCTC-TGTCATGGGGGG-CACCGACGCCCGGCCTTGAACTTCTGTGACGGCGCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Rickenella_pseudogrisella TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCG---GTTTTGCCGTCCGAGTTGTAAT-CTGGAGAAGTGTTTTCCGTGTTGGACCGTGTACAAGTCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTC-TTTGACACGGAC-TACCAATACTT-TGTGATACGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTCCGGGACTCAGCCTTGC--TTCTGCTTGGTGTATTTCCTGGTT-GACGGGCCAACATCGATTTTGGA-CGGCGGATAAAGATGGAGGGAATGTGGCACCTTA--GGGTGTGTTATAGCCTTCTGTCGCATACGTCGACTGGGATCGAGGATCGCAGCACGCCTTTTTGGCCGGGG--TTCGCCC-ACGTAACGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTAGGGTGGA-AAACCCTTGCGCGTAATGAAAGTGAAA-GTTGGGACCTC-TGTCATGGAGGG-CACCGACGCCCGGCCTTGAGCTTTTGTGACGGTGCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCG Trichaptum_abietinum TTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCG---GTTTCACCGTCCGAGTTGTAAT-CTGGAGAAGCGTTTTCCGTGTCGGACCGTGCACAAGTCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTTTTATGGCACGGAC-ACCCGATACTT-TGTGATACGTTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAGACCGATACGGACCAAGTACCGTAAGGGAAAGATCAAAAGCACCTTTGGAAAGAGAGTTAACCAGTACGTGAAATTGTTGAAAGGGAAACGCCTGAAGTCAGTCGCGTCCTCTAGGAATCAGCCTTAC--TTCGG-TTAGTGTACT--CTGGTTTGACGGGTCAACATCGATTTTGAT-CGACGGATAAAGG-AGAAGGAATGTGGCACCTCC--GGGTGTGTTATAGCCCTC-CTCGTATACGTCGATT-GGATCGAGGACTGCAGCACGCCTT-GTGGCCGGGG--TTCGCCCTACGTATCGTGCTTAGGATGTTGACATAATGGCTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTCGCGAGTGTTAGGGTGGA-AAACCCTTGCGCGTAATGAAAGTGAAA-GTTGGGACCTC-TG-CAAGGAGGG-CACCGACGCCCGGCCCTGAAGTTCTCTGACGGTGCTGCGGTAGAGCGCGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG-CGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGG-TATAGGG-CGAAAGACT-ATCG ; END; BEGIN SETS; CHARSET AMBIG (CHARACTERS = Hymenochaetoid_clade_28S_rDNA) = 54-60; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Hymenochaetoid_clade_28S_rDNA) = N: 1-896; CODONPOSSET CodonPositions (CHARACTERS = Hymenochaetoid_clade_28S_rDNA) = N: 1-896; END; [ The following blocks are output data for analysis step 3356 ] BEGIN TREES; TITLE Tb8129; LINK TAXA = TaxaForAnalysisStep3356; TREE Hymenochaetoid_MP4 = [&R] ((Ramaria_eumorpha,Clavulina_cristata),Auriscalpium_vulgare,(((((((((Clavaria_purpurea_DJM1334,Clavaria_nebulosoides),Clavaria_purpurea_BD299),Cantharellopsis_prescotii),Omphalina_brevibasidiata),Rickenella_mellea),((Trichaptum_abietinum,(Omphalina_marchantiae,Hyphodontia_radula)),Rickenella_pseudogrisella)),Omphalina_rosella),((Cotylidia_alba,Cotylidia_diaphina),Cotylidia_aurantiaca)),Resinicium_bicolor)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4733] END; BEGIN TREES; TITLE Tb8129; LINK TAXA = TaxaForAnalysisStep3356; TREE Hymenochaetoid_MP5 = [&R] ((Ramaria_eumorpha,Clavulina_cristata),Auriscalpium_vulgare,(((((((((Clavaria_purpurea_DJM1334,Clavaria_nebulosoides),Clavaria_purpurea_BD299),Cantharellopsis_prescotii),Omphalina_brevibasidiata),(((Cotylidia_alba,Cotylidia_diaphina),Cotylidia_aurantiaca),Omphalina_rosella)),(Trichaptum_abietinum,(Omphalina_marchantiae,Hyphodontia_radula))),Rickenella_pseudogrisella),Rickenella_mellea),Resinicium_bicolor)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4732] END; BEGIN TREES; TITLE Tb8129; LINK TAXA = TaxaForAnalysisStep3356; TREE Hymenochaetoid_MP7 = [&R] ((Ramaria_eumorpha,Clavulina_cristata),Auriscalpium_vulgare,(((((((((Clavaria_purpurea_DJM1334,Clavaria_nebulosoides),Clavaria_purpurea_BD299),Cantharellopsis_prescotii),Omphalina_brevibasidiata),Rickenella_mellea),Rickenella_pseudogrisella),(((Cotylidia_alba,Cotylidia_diaphina),Cotylidia_aurantiaca),Omphalina_rosella)),(Trichaptum_abietinum,(Omphalina_marchantiae,Hyphodontia_radula))),Resinicium_bicolor)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4730] END; BEGIN TREES; TITLE Tb8129; LINK TAXA = TaxaForAnalysisStep3356; TREE Hymenochaetoid_MP3 = [&R] ((Ramaria_eumorpha,Clavulina_cristata),Auriscalpium_vulgare,(((((((((Clavaria_purpurea_DJM1334,Clavaria_nebulosoides),Clavaria_purpurea_BD299),Cantharellopsis_prescotii),Omphalina_brevibasidiata),(Trichaptum_abietinum,(Omphalina_marchantiae,Hyphodontia_radula))),Rickenella_pseudogrisella),(((Cotylidia_alba,Cotylidia_diaphina),Cotylidia_aurantiaca),Omphalina_rosella)),Rickenella_mellea),Resinicium_bicolor)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4734] END; BEGIN TREES; TITLE Tb8129; LINK TAXA = TaxaForAnalysisStep3356; TREE Hymenochaetoid_MP2 = [&R] ((Ramaria_eumorpha,Clavulina_cristata),Auriscalpium_vulgare,((((((((Clavaria_purpurea_DJM1334,Clavaria_nebulosoides),Clavaria_purpurea_BD299),Omphalina_brevibasidiata),((Resinicium_bicolor,Cantharellopsis_prescotii),Rickenella_mellea)),((Trichaptum_abietinum,(Omphalina_marchantiae,Hyphodontia_radula)),Rickenella_pseudogrisella)),Omphalina_rosella),(Cotylidia_alba,Cotylidia_diaphina)),Cotylidia_aurantiaca)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4735] END; BEGIN TREES; TITLE Tb8129; LINK TAXA = TaxaForAnalysisStep3356; TREE Hymenochaetoid_MP1 = [&R] ((Ramaria_eumorpha,Clavulina_cristata),Auriscalpium_vulgare,(((((((((Clavaria_purpurea_DJM1334,Clavaria_nebulosoides),Clavaria_purpurea_BD299),Omphalina_brevibasidiata),(Resinicium_bicolor,Cantharellopsis_prescotii)),Rickenella_mellea),((Trichaptum_abietinum,(Omphalina_marchantiae,Hyphodontia_radula)),Rickenella_pseudogrisella)),Omphalina_rosella),(Cotylidia_alba,Cotylidia_diaphina)),Cotylidia_aurantiaca)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4736] END; BEGIN TREES; TITLE Tb8129; LINK TAXA = TaxaForAnalysisStep3356; TREE Hymenochaetoid_MP6 = [&R] ((Ramaria_eumorpha,Clavulina_cristata),Auriscalpium_vulgare,(((((((((Clavaria_purpurea_DJM1334,Clavaria_nebulosoides),Clavaria_purpurea_BD299),Cantharellopsis_prescotii),Omphalina_brevibasidiata),Rickenella_mellea),(((Cotylidia_alba,Cotylidia_diaphina),Cotylidia_aurantiaca),Omphalina_rosella)),Rickenella_pseudogrisella),(Trichaptum_abietinum,(Omphalina_marchantiae,Hyphodontia_radula))),Resinicium_bicolor)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4731] END;