#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 28, 2024; 9:04 GMT TreeBASE (cc) 1994-2008 Study reference: Dentinger B., & Mclaughlin D. 2006. Reconstructing the Clavariaceae using nuclear large subunit rDNA sequences and a new genus segregated from Clavaria. Mycologia, 98(5): 746-762. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1699] [ The following blocks are input data for analysis step 3362 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3362; DIMENSIONS NTAX=19; TAXLABELS Armillaria_NABSI_GC17 Armillaria_irazuensis Armillaria_tabescens Cyptotrama_asprata Flammulina_velutipes Gloiocephala_menieri Gloiocephala_sp._TENN7573 Gloiocephala_spathularia Oudemansiella_canarii Physalacria_aff._orinocensis Physalacria_corticola Physalacria_inflata Physalacria_maipoensis Physalacria_sp._DJM_1035 Rhizomarasmius_pyrrhocephalus Rhodotus_palmatus Strobilurus_trullisatus Xerula_furfuracea Xerula_megalospora ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M911] TITLE Physalacriaceae_clade_28S_rDNA; LINK TAXA = TaxaForAnalysisStep3362; DIMENSIONS NCHAR=902; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Armillaria_NABSI_GC17 TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCAGC-TTC-GCTGTCCGAGTTGTAATTTAGAGAAGTGTTACCCGCGTTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTACCAAGGCTTTGTGGTACGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-ANCTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCCAGTCGCGTTGGTTAGG-AATCAGCCTTGG------TTTT--CCTTGGTGTACTTCCTAA----TCGACGGGTCAACATCAGTTTTGACCGTTGGATAAAGGTCGAGGGAATGTGGCA-CCTTC-GGGTGTGTTATAGCCCTCGATTGTATACAGCGGTTGGGACT-GAGGA----ACTCAGCACGCCGAAA------GGCCGGG-TC--TTGTACCACGTTCGTG----CTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCATGCGAGTGTTTGGGTGGA-AAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGAACTCTT-AGAGTGCATCGACGCCCGGAGCAGACCTTTT-GTGACGCATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Armillaria_irazuensis TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCAGGTTT--CCTGTCCGAGTTGTAATTTAGAGAAGTGTTGCCCGCGTTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTACCAAGGCATTGTGGTACGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCCAGTCGCGTTGGTTAGC-AATCAGCCTTGGGAAGAGATTT--CCTTGGTGGACTTGGTAA----TCGACGGGTCAACATCAGTTTTGAGCGTTGGATAAATGTCAAGGGAATGTGGCAT-CCTC-GGATGTGTTATAGGCCTTGATTGTATACAGCGGTTGGGACT-GAGGA----ACTCAGCACGCC-ATTTATTTTGGCCGGG-TC--TTGTACCACGTACGTG----CTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCATGCGAGTGTTTGGGTGTA-AAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGAACTCTT-AGAGTGCATCGACGCCCGGAGCAGAGCTTTT-GTGAGGCATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Armillaria_tabescens TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCAG-TTTC-ACTGTCCGAGTTGTAATTTAGAGAAGTGTTGCCCGCGTTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTACCAAGGCTTTGTGGTACGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCCAGTCGCGTTGGTTAGG-AATCAGCCTTGG------TTTT--CCTTGGTGCACTTCCTAG----TCGACGGGTCAACATCAGTTTTGACCGTTGGATAAAGGTCAAGGGAATGTGGCA-CCTTC-GGGTGTGTTATAGCCTTTGATTGTATACAGCGGTTGGGACT-GAGGA----ACTCAGCACGCCGAAA------GGCCGGG-TC--TTGTACCACGTTCGTG----CTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGA-AAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGAACTCTT-AGAGTGCATCGACGCCCGGAGCAGACCTTTT-GTGACGCATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Cyptotrama_asprata TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCAG-TTT--GCTGTCCGAGTTGTAAATTAGAGAAGTGTTGCCCGTGTTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGGAACCCCCAATACTTTGTGGTACACTCTCAAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCCAGTCGCGTTGGTTGGA-AATCAGTCTTGC----TTGTTT--GCTTGATGTACTTTCTGA---CTTGACGGGTCAACATCAGTTTTGACCGGTGGATAAAGGTTGAGGGAATGTGGCAC-CTTC-GGGTGTGTTATAGCCCTTGATTGTATGCATCGGTTGGGACT-GAGG-----CTTC---ACGCCGCAA------GG------------------------------TGTTGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTTGGGTGGA-AAACCCACATGCGCAATGAAAGTGAAAGTTGAGAACTCGTTAGAGTGCATCGACGCCCATACCTGACGTTTTACTGACGGATATGCGGTAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG Flammulina_velutipes TCCCCTAGTAACTGCGAGTGAA--GGGAAAAGCTCAAA---AAAATCTGG--G---TC-GCTGTCCGAGTTGTAATTTAGAGAAGTGTTGCCCGCGCTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTCCCAGTGCATTGTGGTACGCTCTCAAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCCAGTCGCGTCGGTTGGG-AATCAGTCTCGC----TCTCTT--GCTTGACGTACTTCCCAC----GTGACGGGTCAGCATCAGTTTTGATCGTTGGATAAAGGTTGGAGGAATGTGGCA--CTTC-GGGTGTGTTATAGCCTCTGATTGTATACAACGGTTGGGACT-GAGGA----ACTCAGCACGCCGAAA------GGCCGGG-TAC-TTGTACCCCGTACGTG----CTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGA-AAACCCGAGTGCGCAATGAAAGTGAAAGTTGAGAACTCTTTAGAGTGCATCGACGCCCGGACCAGACGTTCT-CTGACGGATCCGCGGTAGAGCATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Gloiocephala_menieri TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGC-GCTTT--GCTGTCCGAGTTGTAATTTAGAGAAGTGTTACCCGCGTTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTACCAATGCTTTGTGGTATGCTCTCGAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCCAGTCGCGTTGGTTGGA-AATCAGTCTTGC------TTCT--GCTTGATGTACTTTCTAA----TCGACGGGTCAACATCAGTTTTGACCGTTGGATAAAGGTTGAAGGAATGTGGCAT-CTTT-AGATGTGTTATAGCCTTCAATTGTATACAACGGTTGGGACT-GAGGA----ACTCAGCATGCCGCAA------GGCCGGG-TC--TTGTACCACGTTCATG----CTTAGGATGTTGGCATAATGGCTTTAATCGA-CCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGA-AAACCCGAGTGCGCAATGAAAGTGAAAGTTGAGAACTCTTTAGAGTGCATCGACGCCCGGACCAGACGTTTT-CTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Gloiocephala_sp._TENN7573 TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCAGC-TTC-GCTGTCCGAGTTGTAATTTAGAGAAGTGTTACCCGCGTTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTACCAAGGCTTTGTGGTACGCTCTCAAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCCAGTCGCGTTGGTTGGA-AATCAGTCTTGC------TTTT--GCTTGATGTACTTTCTAA----TTGACGGGTCAACATCAGTTTTGACCGTTGGATAAAGGTTGAAGGAATGTGGCAC-CCTC-GGGTGTGTTATAGCCTTTGATTGTATACAACGGTTGGGACT-GAGGA----ACTCAGCACGCCGAAA------GGCCGGG-TC--TTGTACCACGTACGTG----CTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGA-AAACCCGAGTGCGCAATGAAAGTGAAAGTTGAGAACTCTTTAGAGTGCATCGACGCCCGGACCAGACGTTTT-CTGACGGATCTGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Gloiocephala_spathularia TCCCCTAGTAACTGCGAGTGAAGAGGGAAGAGCTCAAATTTGAAATCTGGCAGC-CTC-GCTGTCCGAGTTGTAATCTAGAGAAGCGATGCCCGCGCTGGACCGTGTACAAGTCTCCTGGAACGGGGCGTC--ACAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTGCCAGTGCTCTGTGGTACGCTCTCGAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAACGGGTGGTAAATTCCATCTAAAGCTAAACATTGGCGAGA--GACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAG-CACTTTGGAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTC-AGACGCGTTGGCCGAG-AATCAGTCTTGC----TCT-CT-CGCTCGACGTACTTCTCGGTCCTCCAACGGGTCAGCATCAGTTTCGACCGCCGGAGAAGGGCGGAGGGAAGGTGGCA-CCCTC-GGGTGTGTTATAGCCCTCTGTCGCATGCGGCGGTTC---CTCGAG------ACTGAG----------------GG-----TTC--TTGTT-CA-GGCCGTGAGGCCGTGGGATGCTGGCGTAATGGCTTCAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTCGGGTGGTGAAACCCGTGCGCGAAATGAAAGTGAAAGTTGAGAGCTCCTCAGAGCGCATCGACGCCCGGACCTGAAGTCTCACTGACGGATCCGCGGTAGAGCATGCATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Oudemansiella_canarii TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCAGC-TTC-GCTGTCCGAGTTGTAATTTAGAGAAGTGTTGCCCTTGCTGGACCGTGTACAAGTTTCCTGGAACGGAACGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTCCCAGTATGTTGTGGTGCGCTCTCGAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCTAGTCGCATCGGTTGGG-GATCAGTCTTGC------TTCT--GCTTGATGTATGTCACAA----TCGATGGGTCAGCATCAGTTTTGACCGTTGAATAAAGGTTGGGGGAATGTGGCAT-CTTC-GGATGTGTTATAGCCTCTGATTGTATACAACGGTTGGGACT-GAGGA----ACTCAGCACGCCGCAA------GGCCGGG-TAC-TTGTACCACGTTCGTG----CTTAGGATGCTGGCATAATAGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGA-AAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGAACTCATCAGAGTGCATCGACGCCCGGACCAGACGTTTT-CTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Physalacria_aff._orinocensis TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCAGC-TTC-GCTGTCCGAGTTGTAATTTAGAGAAGCAATGCCCGCGCTGGACCGTGTAAAAGTCTCCTGGAATGGTGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGATACGG-ACTACCAGTGCATTGTGGTATGCTCTCAAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTC-AGTCGCGTTGGTTGGG-AATCAGTCTTGC------TTCT--GCATGATGTACTTTCCAG----TCAATGGGTCAGCATCAGTTTTGACTGCTGGATAAAGGCTGAGGGAATGTGGCA-CCTTC-GGGTGTGTTATAGCCCTCGGTTGTATACAGTGGTTGGGACT-GAGGA----TCTCAG---GCCGCAA------GGC-----------------------------TGTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTCGGGTGGA-AAACCCGTGTGCGTAATGAAAGTGAAAGTTGAGAACTCTTTAGAGTGCATCGACGCCCGGACCAGATGTTTA-CTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Physalacria_corticola TCCCCTAGTA-CTGCGAGTGAAGAGGGAAAAGCTCAAATTTAGAATCTGGCAGC-TTC-GCTGTCCGAGTTGTAATTTAGAGAAGCAATGCCCGCGCTGGACCGTGTATAAGTCTCCTGGAATGGTGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGATACGG-ACTCCCAGTGCATTGTGGTATGCTCTCAAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTC-AGTCGCATTGGTTGGG-AATCAGTCTTGC------TTTT--GCTTGATGTACTTTCCAG----TCAATGGGTCAGCATCAGTTTTGACTGCTGGACAAAGGCTGAGGGAATGTGGCA-CCTTC-GGGTGTGTTATAGCCCTCAGTTGTATACAGTAGTTGGGACT-GAGGT----TCTCAG---GCCGCAA------GGC-----------------------------TGTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTCGGGTGGT-AAACCCGTATGCGTAATGAAAGTGAAAGTTGAGAACTCTTTAGAGTGCATCGACGCCCGGACCTGATGTTTA-CTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Physalacria_inflata TCCCCTAGTAACTGCGAGTGAAGAGGGAGAAGCTCAAATTTAGAATCTGGCGGC-TTC-GTCGCCCGAGTTGTAATTTAGAGAAGCGATGCCTGCGCTGGACCGTGTACAAGTCTCCTGGAACGGTGCGTC--ATAGAGGGTGAGAATCCCGTCTCTGACACGG-ACTGCCAGCGCTCTGTGGTACGCTCTCGAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAACATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTC-AGTCGCGTTGGCCGGG-AATCAGTCTTGC----TCTTCTGGGCTCGACGCACTTCTCGG----TNGACGGGTCAGCATCAGTTTCGACCGTCGGACAAAGGCCGAGGGAAGGTGGCATCCTTCNGGGTGTGTTATAGCCCTCGGTTGCATGCGATGGCTGGGACT-GAGGAAGGCTCTCAG---GCCGCAA------GGC-----------------------------CGCGGGATGCTGGCGTAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTCGGGTGGC-AAACCCGCGTGCGCAATGAAAGTGAAAGTTGAGAACTCTTTAGAGTGCATCGACGCCCGGACCAGACGTTTA-CTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Physalacria_maipoensis TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCAGC-TTC-GCTGTCCGAGTTGTAATTTAGAGAAGCAATGCCCGCGCTGGACCGTGTAAAAGTCTCCTGGAATGGTGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGATACGG-ACTACCAGTGCATTGTGGTATGCTCTCAAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTC-AGTCGCGTTGGTTGGG-AATCAGTCTTGC------TTCT--GCATGATGTACTTTCCAG----TCAATGGGTCAGCATCAGTTTTGACTGCTGGATAAAGGCTGNGGGAATGTGGCA-CCTTT-GGGTGTGTTATAGCCCTTGGTTGTATACNGTGGTTGGGACT-GAGGA----TCTCAG---GCCGCAA------GGC-----------------------------TGTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTCGGGTGGA-AAACCCGTGTGCGTAATGAAAGTGAAAGTTGAGAACTCTNTAGAGTGCATCGACGCCCGGACCAGATGTTTA-CTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Physalacria_sp._DJM_1035 TCCC----TAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCAGC--T--GCTGTCCGAGT-GTAATTTAGAGAAGCAATGCCCGCGCTGGACCGTGTAAAAGTCTCCTGGAATGGTGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGATACGG-ACTACCAGTGCATTGTGGTATGCTCTCAAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTC-AGTCGCGTTGGTTGGG-AATCAGTCTTG-------TTCT--GCATGATGTACTTTCCAG----TCAATGGGTCAGCATCAGTTTTGAC-GCTGGATAA-GGCTGAGGGAATGTGGCA-CCTTC-GGGTGTGTTATAGCCCTCGTTG-TATACAGTGGTTGGGACT-GAGGA----TCTCAG---GCC------------------------------------------TGTAGGATGCTGGCATAATGGCTTTAATCGACCGGTCTTGAAACACGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Rhizomarasmius_pyrrhocephalus TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCAGCTTT--GCTGTCCGAGTTGTAATTTAGAGAAGTGTTACCCGCGTTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTACCAAGGCTTTGTGGTACGCTCTCAAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTAAAAGGGAAACGCTTAAAGTCCAGTCGCGTTGGTTGGA-AATCAGTCTTGC-----TTTTT--GCTTGATGTACTTTCTAA----CTGACGGGTCAGCATCAGTTTTGATCGTTGGATAAAGGTTGAAGGAATGTGGCAT-CCTC-GGATGTGTTATAGCCTTCGATTGTATACAACGGTTGGGACT-GAGGA----ACTCAGCACGCCGAAA------GGCCGGG-TC--TTGTACCACGTTCGTG----CTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGA-AAACCCGAGTGCGCAATGAAAGTGAAAGTTGAGAACTCTTTAGAGTGCATCGACGCCCGGACCAGACGTTTT-CTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Rhodotus_palmatus TCCCCTAGTAACTGCGAGTGAAGAGGGAAGAGCTCAAATTTAAAATCTGGCAGC-TTC-GCTGTCCGAGTTGTAATTTAGAGAAGCGATGCCCGTGCTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTCCCAGTGCATTGTGGTACGCTCTCAAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCCAGTCGCGTCTTCTGGG-AATCAGTCTTGC------TTCT--GCATGATGTACTTTCTAG----TCGACGGGTCAGCATCAGTTTTGACCGGTGGACAAGAGTTGGAGGAATGTGGCA-CCCTC-GGGTGTGTTATAGCCTCTGATTGTATACGCCGGTTGGGACT-GAGGA----ACTCAGCACGCCGCAA------GGCCGGG-TCTTTTG-ACCACGTTCGTG----CTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGA-AAACCCGAGTGCGTAATGAAAGTGAAAGTTGAGAACTCTCTAGAGTGCATCGACGCCCGGACCAGATGTTTT-CTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Strobilurus_trullisatus TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGC-G---TC-GCTGTCCGAGTTGTAATTTAGAGAAGTGTTACCCGTGCTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTCCCAGTGCATTGTGGTACGCTCTCAAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCCAGTCGCGTTGGTTGGA-AATCAGTCTTGC------TTCT--GCTTGATGTACTTTCTAA----CTGACGGGTCAGCATCAGTTTTGACCGTTGGATAAAGGTTGGAGGAATGTGGCAT-CTTC-GGGTGTGTTATAGCCTTCGATTGTATACAACGGTTGGGACT-GAGGA----ACTCAGCACGCCGAAA------GGCCGGG-TC--TTGTAC-ACGTTCGTG----CTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGA-AAACCCGAGTGCGCAATGAAAGTGAAAGTTGAGAACTCTTTAGAGTGCATCGACGCCCGGACCAGACGTTTT-CTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Xerula_furfuracea TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCAGCTTTCCGCTGTCCGAGTTGTAATTTAGAGAAGTGTTGCCCTTGCTGGACCGTGTACAAGTTTCCTGGAACGGAACGTC--ATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTCCCAGCATTTTGTGGTACGCTCTCGAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG-AACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCTAGTCGCGTCGGTTGGG-AATCAGTCTTGC------TTCT--GCTTGACGTACTTTCTAA----TCGACGGGTCAGCATCAGTTTTGACCGTTGGATAAAGGTTGGGGGAAGGTGGCAT-CCTC-GGATGTGTTATAGCCTCTGATTGTATACAACGGTTGGGACT-GAGGA----ACTCAGCACGCCGCAA------GGCCGGG-TAC-TTGTACCACGTACGTG----CTTAGGATGCTGGCATAATAGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGA-AAACCCGAGCGCGCAATGAAAGTGAAAGTTGAGAACTCATCAGAGTGCATCGACGCCCGGACCAGACGTTTT-CTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG Xerula_megalospora TCCCCTAGTAACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGC-G--TTC-GCTGTCCGAGTTGTAATTTAGAGAAGTGTTACCCTTGCTGGACCGTGTACAAGTTTCCTGGAACGGAACGTCATATAGAGGGTGAGAATCCCGTCTTTGACACGG-ACTCCCAGCATTTTGTGGTACGCTCTCGAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGA--GACCGATAGCAAACAAGTACCGTGAGGGAAGGATGAAAAGAAACTTTGGAAAGACAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCTAGTCGCGTCGGTTGGGAAATCAGTCTTGC------TTCT--GCTTGACGTACTTTCTAA----TCGACGGGTCAGCATCAGTTTTGACCGTTGGATAAAGGTTGGAGGAAGGTGGCAT-CCTC-GGATGTGTTATAGCCTCTGATTGTATACAACGGTTGGGACT-GAGGA----ACTCAGCACGCCGCAA------GGCCGGG-TAC-TTGTAC-ACGTTCGTG----CTTAGGATGCTGGCATAATAGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGA-AAACCCGAGCGCGCAATGAAAGTGAAAGTTGAGAACTCATCAGAGTGCATCGACGCCCGGACCAGACGTTTT-CTGACGGATCCGCGGTAGAGCATG-ATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Physalacriaceae_clade_28S_rDNA) = N: 1-902; CODONPOSSET CodonPositions (CHARACTERS = Physalacriaceae_clade_28S_rDNA) = N: 1-902; END; [ The following blocks are output data for analysis step 3362 ] BEGIN TREES; TITLE Tb8135; LINK TAXA = TaxaForAnalysisStep3362; TREE Physalacriaceae_Clade_MP1 = [&R] (Armillaria_tabescens,((Armillaria_NABSI_GC17,(((((((((Physalacria_corticola,(Physalacria_maipoensis,Physalacria_sp._DJM_1035,Physalacria_aff._orinocensis)),(Physalacria_inflata,Gloiocephala_spathularia)),Rhodotus_palmatus),((Xerula_megalospora,Xerula_furfuracea),Oudemansiella_canarii)),Flammulina_velutipes),Strobilurus_trullisatus),Rhizomarasmius_pyrrhocephalus),(Cyptotrama_asprata,Gloiocephala_sp._TENN7573)),Gloiocephala_menieri)),Armillaria_irazuensis)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr333] END; BEGIN TREES; TITLE Tb8135; LINK TAXA = TaxaForAnalysisStep3362; TREE Physalacriaceae_Clade_MP2 = [&R] (Armillaria_tabescens,((Armillaria_NABSI_GC17,(((((((((Physalacria_corticola,((Physalacria_maipoensis,Physalacria_aff._orinocensis),Physalacria_sp._DJM_1035)),(Physalacria_inflata,Gloiocephala_spathularia)),Rhodotus_palmatus),((Xerula_megalospora,Xerula_furfuracea),Oudemansiella_canarii)),Flammulina_velutipes),Strobilurus_trullisatus),Rhizomarasmius_pyrrhocephalus),(Cyptotrama_asprata,Gloiocephala_sp._TENN7573)),Gloiocephala_menieri)),Armillaria_irazuensis)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr332] END;