#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 2:16 GMT TreeBASE (cc) 1994-2008 Study reference: Doust A., Penly A., Jacobs S., & Kellogg E. 2007. Congruence, Conflict, and Polyploidization Shown by Nuclear and Chloroplast Markers in the Monophyletic “Bristle Clade” (Paniceae, Panicoideae, Poaceae). Systematic Botany, 32(3): 531-544. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1731] [ The following blocks are input data for analysis step 3430 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3430; DIMENSIONS NTAX=37; TAXLABELS 'Cenchrus calyculatus A-a' 'Cenchrus ciliaris 2-D-a' Cenchrus_echinatus_D 'Cenchrus myosuroides E-b' 'Cenchrus pilosus E-a' 'Cenchrus setigerus F-b' 'Ixophorus unisetus 1-T-a' 'Panicum miliaceum I-a' 'Paspalidium aversum G-b' 'Paspalidium distans 2-F-a' 'Paspalidium jubiflorum E-a' 'Pennisetum alopecuroides B-a' 'Pennisetum flaccidum 1-B' 'Pennisetum glaucum E-b' Pennisetum_villosum_F 'Pseudoraphis paradoxa F-b' Setaria_barbata_A 'Setaria geniculata G-a' 'Setaria grisebachii F-a' 'Setaria italica 1-H' 'Setaria palmifolia F-a' 'Setaria parviflora G-a' 'Setaria poiretiana 1-B-a' 'Setaria poiretiana 2-B-b' 'Setaria pumila E-b' 'Setaria sphacelata A-b' 'Setaria verticillata 1-O' 'Setaria verticillata 2-G-a' 'Setaria viridis 2-C' Spinifex_sericeus_H 'Stenotaphrum secundatum I-b' 'Zuloagea bulbosa 1-R-b' 'Zuloagea bulbosa 2-R-b' 'Zuloagea bulbosa 3-O-a' 'Zuloagea bulbosa 4-F-b' 'Zygochloa paradoxa 1-G-a' 'Zygochloa paradoxa 2-G-a' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1724] TITLE kn1_reduced; LINK TAXA = TaxaForAnalysisStep3430; DIMENSIONS NCHAR=762; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Cenchrus calyculatus A-a' TCGAGTGCCAGAAGGCAAGTAG---------------TAGTAGCAGTCT---AACAGT-GGAGCTTG------------------CTGCTGCGGTTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC--TCAGCTGGCTCA-TGTA--GACA----TCTGCATCG----AACG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGT----------------------ACC-------TAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGT----CCTTTTG---TG---------------------------CAC-GT-ACGGT-GGCGTAC---------CAA-------GTCTCAACTCG--------------TTTTTTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGAGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTGTCCATCTCCGGCAGA 'Cenchrus ciliaris 2-D-a' TCGAGTGCCAGAAGGCAAGTAG---------------TAGTAGCAGTCT---AACAGT-GGAGCTTG------------------CTGCTGCT---------TCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC--TCAGCTGGCTCA-TGTA--GACA----TGCGCATCG----AACG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGT----------------------ACC-------TAG---TAACC---AACAATT-----CCTCTTCAGAT----CGAGAAAGAA-CGCGT----CTTTTTG---TG---------------------------CAC-GT-ACGGT-GGCGTAC---------CAA-------GTCTCAACTCG--------------TTTTTTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGAGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCCCTGTCCATCTCCGGCAGA Cenchrus_echinatus_D TCGAGTGCCAGAAGGCAAGTAG---------------TAGTAGCAGTCT---AACAGT-GGAGCTTG------------------CTGCTGCGGCTTCCGGTTCTGCTCGAGAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGAA--GGCTATAATTTATGCATGCTACTC--TCAGCTGGCTCA-TGTA--GACC----TGTGCATTG----AACG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCACCGCCGGAGGTGTCGGCGAGGCTAACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGT----------------------ACC-------TAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGT----CCTTTTG---TG---------------------------CAC-GT-ACGGT-GGCATAC---------CAA-------GTCTCAACTCG--------------TTTTTTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGAGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCCCTGTCCATCTCCGGCAGA 'Cenchrus myosuroides E-b' TCGAGTGCCAGAAGGCAAGTAG---------------TAGTAGCAGTCG---AACAGT-GGAGCTTG------------------CTGCTGCGGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC--TCAGCTGGCTCA-TGTA--GACA----TCTGCATCG----AACG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGT----------------------ACC-------TAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGT----CCTTTTG---TG---------------------------CAC-GT-ACGGT-GGCGTAC---------CAA-------GTCTCAACTCG--------------TTTTTTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGAGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTGTCCATCTCCGGCAGA 'Cenchrus pilosus E-a' TCGAGTGCCAGAAGGCAAGTAG---------------TAGTAGCAGTCT---AACAGT-GGAGCTTG------------------CTGCTGCGGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC--TCAGCTGGCTCA-TGTA--GACA----TCTGCATCG----AACG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGT----------------------ACC-------TAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGT----CCTTTTG---TG---------------------------CAC-GT-ACGGT-GGCGTAC---------CAA-------GTCTCAACTCG------------TTTTTTTTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGAGAGGAGCTGACGAGACCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAATCGCAGCTCAACTCGCTGTCCATCTCCGGCAGA 'Cenchrus setigerus F-b' TCGAGTGCCAGAAGGCAAGTAG---------------TAGTAGCAGTCT---AACAGT-GGAGCTTG------------------CTGCTGCGGCTTCCGGTTCTGCTCGAGAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGAA--GGCTATAATTTATGCATGCTACTC--CCAGCTGGCTCA-TGTA--GACC----TGTGCATTG----AACG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTAACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACGGCGCTCGGCGGGCTAGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGT----------------------ACC-------TAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGT----CCTTTTG---TG---------------------------CAC-GT-ACGGT-GGCGTAC---------CAA-------GTCTCAACTCG--------------TTTCTTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGAGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCCCTGTCCATCTCCGGCAGA 'Ixophorus unisetus 1-T-a' TCGAGTGCCAGAAGGCAAGTAT---------------------CAGTCTAACAACAGTCGGAGTTTG------------CTGCTGCTGCTGCTGCTTCCGGTTCTGCTG--GAGAAGTTTTTCC--------TACATCTGATGTCAAACA----TGG-CTC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCAAGCTACTC----AACTCGTG---TG----GACA----TGTGTATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGACGCAGGAGCTGGAAGCCCGGCAGCGCACGGCGTTCGGTGGGCTCGGCGCCGCCACTGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATAT--AATAT-----CACC----TAACAG---TAACC---AACAATT-----TCTCTTCTGAT----GGAGAAAGAA-CGCGC----CTGTCTG-TGTGTTCTCACGG-------TTTTATTCTGTCACGGTCACGGT-GGCGTAC----GTGCTCG--------GTCTCAGCTCG--------------TCTTGTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTTCATATCTGGCAGA 'Panicum miliaceum I-a' TCGAGTGCCAGAAGGCAAGACT-------AGCTGTATCAGTAACAGTCT---AACAGT-AGCG----------------------CTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCAGACTTT-CTGCTTGCTTTTCCATAGCA--TGCTATAGTTTATGCACGCTGCTC-------------A-TGTA--GACA----TGTGCATCT----AGTG--TTCAGAACTTTTGGCCGTGGGTGCTTGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAGGCCCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCGACGGAGCCGGAGCTGGACCAGTTCATGGTGAGCCATA------------CCATACATCAGCTAG---TAACA---CACAATT-----TCTCTTCA--------GAGAAAGGA-CGCGT----CAGTCT--TTGCTCTTCAAGG-------C-TTATT----CAC--TCACGGT-GGCGTAC----GTCCTTG--------CTTTCAACTCGG--------TTCTTGTTCTTCTGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAGCTCGCTCTCCATCTCCGGCAGA 'Paspalidium aversum G-b' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGC-AGTGCTTG---------------CTGCTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTCACTCAGCT----CA-TGTA--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTCGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCACGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAACTGGATCAGTTCATGGTGAGCTATATAT----------CACC---TAG-TAG---TAACC---AACTATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC---CCTGTCTG-TGTGTTCTCAAGG-------TTTTATTCAGTCACGGTCACGGT-GGCGTAC----GTGCTCG--------CTCTCATCTCG--------------TCTTCTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGGGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCACGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Paspalidium distans 2-F-a' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGC-AGTGCTTG---------------CTGCTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTCACTCAGCT----CA-TGTA--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTCGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCACGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAACTGGATCAGTTCATGGTGAGCTATATAT----------CACC---TAG-TAG---TAACC---AACTATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC---CCTGTCTG-TGTGTTCTCAAGG-------TTTTATTCAGTCACGGTCACGGT-GGCGTAC----GTGCTCG--------CTCTCATCTCG--------------TCTTCTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCACGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Paspalidium jubiflorum E-a' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGC-AGTGCTTG---------------CTGCCGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTCACTCAGCT----CA-TGTA--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTCGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCACGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAACTGGATCAGTTCATGGTGAGCTATATAT----------CACC---TAG-TAG---TAACC---AACTATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC---CCTGTCTG-TGTGTTCTCAAGG-------TTTTATTCAGTCACGGTCACGGT-GGCGTAC----GTGCTCG--------CTCTCATCTCG--------------TCTTCTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Pennisetum alopecuroides B-a' TCGAGTGCCAGAAGGCAAGTAG-------------------CT--GTCT---AACAGT-AGAGCTTG------------------CTGCTGCGGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGGG----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC--TCAGCT----CA-TGTA--GACT----TGCGCATCG----AACG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCGCCGCCGGAGGTGTCTGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTACAT----------ATCACC-------TAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC----CTGTCTG---TGTTCTCAAGG--------TTTATT----CAC--TCACGTT-GGCCTAC----GCCCTCA--------CTTTCAACTCGG-----------TTTTTTTTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Pennisetum flaccidum 1-B' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAAT-AGAGCTTG------------------CTGCTGCGGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC--TCAGCT----CA-TGTA--GACA----TGTGCATCG----AACG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATATAT--------ATCACC-------TAG---TCACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC----CTGTCTG---TGTTCTCAAGG--------TTTATT----CAC--TCACGTC-GGCCTTC----GCCCTCA--------CTTCCAACTCGG-----------TTTTTTCCCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGTAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Pennisetum glaucum E-b' TCGAGTGCCAGAAGGCAAGTAG---------------------CTGCCTAACAACAGT-AGAGAGCT-------TGCTGCTGCTGCTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCATGCG----TGG-CGCGCATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC--TCAGCT----CA-TGTA--GACA----TGTGCATCG----AACG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCACCGCCGGAGGTGTCGGCAAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGTTGGATCAGTTCATGGTGAGCTACA----------CATCACC---TAGTAAT---TAACC---AACAATT-----TCTCTTCAGGT----CGAGAAAGAA-CGGGC----CTGTCAGCTGTGTTCTCAAGG--------TTTATT----CACTCACACGTT-GGCTTAC----GCCCTCA--------CTTTCAACTCGA---TTTTTTTTTTTACTTTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA Pennisetum_villosum_F TCGAGTGCCAGAAGGCAAGTAG---------------------CTGTCT---AACAGT-AGAGCTTG---------------CCGCTGCTGCGGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC--CCAGCT----CA-TGTA--GACA----TGTGCATCG----AACG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCGCCACCGGAGGTGTCGGCGAGGCTGTCGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACGGCGCTCGGCGGGCTCAGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTACA----------TATCACC-------TAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGGCC----ATGTC---GGTGTTCTCAAGG-------TTTT---------C--AGACGTT-GGCCTAC----GCCATCA--------CTTTCGACTCGG---------TTTTTTTCTTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Pseudoraphis paradoxa F-b' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCTT--AACAGT-AGAGCTTG---------------------CTGCTGCTTCCGGTTCTGCTC--AAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGGACACTTTTCTGCTTGCTTTTGCGTAGCG--GGCTATAGTTTATGCATGCTACTC----AGCT----CA-TGTT--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGTAGGTTGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCACAGGAACTGGAAGCCCGGCAGCGCACGGCGCTCGGCGGACTCGGCGCCGCAACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATA-------------CACA--TCAGCTAG---TAACA---AACAATT-----TCTCTTCAGAT----CGGGGT-GAA-CGCGC----CTGTCCG-TGTGCTCTCAA--------TTTTTATT----TAC--TCACGTT-GGCCTAC----GTCCTCG--------CTTTCAACCCGG---------TTTTTTTTTTCTGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA Setaria_barbata_A TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGT-AGAGCTTG---------------CTGCTGCTCCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCT----TGG-CGC--ATGCACACTTTTCCGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC----AGCT----CA-TGTA--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTAGCCGTGGGTGTTTGTAGGTTGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACAGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATGTA-----------CATC----AGCTAG---TAATC---AAGAATT-----TCTCTTCAGAT----CGAGGAAGAA-CGCGC----TCTTCTG-TG--CTCTCAAGG--------TTTATT----CAC--TCACGGT-GTCCTACGT--GTCCTCG--------TTTTGAACTC----------------------TGTACAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTAACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGTTCTCCATCTCTGGCAGA 'Setaria geniculata G-a' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGT-AGAGCTTG------------------CTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCCTGCTTTTGCATAGCG--GGCTATAGTTTATGCATGCTACTC----AGCT----CA-TGTT--GACA----TATGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGTAGGTTGGGGCGCCGCCAGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCCCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAACTGGATCAGTTCATGGTGAGCTATA----------CA-CACC----AGCTAG---TTACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGT----CTGCCTG-TGTGTTCTCAAGG--------TTTATT----CGC--TCACTTT-GGCCTAG----GTCCTCA--------CCTTCAACTCGGATC---------TTTTTTTCTGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTTTCCATCTCTGGCAGA 'Setaria grisebachii F-a' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGT-AGCGCTTG---------------CTGCTGCTGCTTCTTCCGATTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC----AGCT----CA-TGTA--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTCTTTGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGTTGACGGCGATGGCGCAGGAGCTGGAAGCCCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTAAGCTATATAT----------CCCC---TAG-TAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGAGC----CTGTCTG-TGTGTTCTCACGG-------TTTTATTCTGTCACGATCTCCGC-GGCGTAC----GTGCTCG--------CTCTCATCTCG--------------TCTTCTCCGTGCAGGAGGCATATCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCTGGCAGA 'Setaria italica 1-H' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCTT--AACAGT-AGAGCTTG------------------CTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGC-----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCG--GGCTATAGTTTATGCATGCTACTC----AGCT----CA-TGTT--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGTAGGTTGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCACAGGAGCTGGAAGCCCGGCAGCGCACGGCGCTCGGCGGGCTCGGTGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATA-------------CACA--ACAGCTAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC----TTGTCTG-TGTGTTCTCAA--------TTTTTACT----CAC--TCACGTT-GGCCTAC----GTCCTCG--------CTTTCAACTCGG---------TTTTTTTTTTCTGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Setaria palmifolia F-a' TCGAGTGCCAGAAGGCAAGTAG------------------CGGCAGTCT---AACAGT-AGCGCTTG---------------CTGCTGCTGCTGCTTCCGGTTCTGCTC--GAGAAATTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCCGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCACGCTACTC----AACT----CA-TGTA--GACA----TGTGCATCA----AGCG--TTCAGAACTTTTGGCCGTGTGTGTTTGCAGGTTGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACAGCGCTCAGCGGACTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATGTA-----------CATC----AGCTAG---TAATC---AACAATT-----TCTCTTCAGAT----CGAGGAAGAA-CGCGT----CCTTCTG-TG--CTCTCAAGG--------TTTATT----CAC--TCACGGT-GGCCTAC----GTCCTCG--------TTTTGAACTC----------------------TGTACAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Setaria parviflora G-a' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGT-AGAGCTTG------------------CTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGCGCATGCGCACTTTTCTGCTTGCTTTTGCATAGCG--GGCTATAGTTTATGCATGCTACTC----AGCT----CA-TGTT--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGTAGGTTGGCGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCCCGGCAGCGCACGGCACTCGGCGGGCTTGGCGCAGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATATAT----------CACC---TAG-TAG---TAGCC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC----CTGCCTG-TGTGTTCTCAAGG--------TTTATT----CGC--TCACGTT-GGCCTAC----GTCCTCG--------CTTTCAACTCG----------TTTTTTTTTTCTGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCTCTCTCCATCTCTGGCAGA 'Setaria poiretiana 1-B-a' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGT-CGAGCTTG---------------CTGCTACTGCTGCTTC-AGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCCGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC----AGCT----CA-TGTA--GACA----TGTGCATCT----AGCGTGTTCAGAACTTTTGGCCGTGGGTGTTTGTAGGTTGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACAGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGTTATGTA-----------CATC----AACTAG---TAATC---AAGAATT-----TCTCTTCAGAT----CGAGGAAGAA-CGCGC----CCTTCTG-TG--CTCTCAAGG--------TTTATT----CAC--TCACGGT-GGCCTACGT--GTCCTCG--------TTTTGAACTC----------------------TGTACAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCTGGCAGA 'Setaria poiretiana 2-B-b' TCGAGTGCCAGAAGGCAAGTAG------------------CGGCAGTCT---AACAGT-AGCGCTTG---------------CTGCTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCCGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCACGCTACTC----AACT----CA-TGTA--GACA----TGTGCATCA----AGCG--TTCAGAACTTTTGGCCGTGTGTGTTTGCAGGTTGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCGCGGCAGCGCACAGCGCTCAGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATGTA-----------CATC----AGCTAG---TAATC---AACAATT-----TCTCTTGAGAT----CGAGGAAGAA-CGCGT----CCTTCTG-TG--CTCTCAAGG--------TTTATT----CAC--TCACGGT-GGCCTAC----GTCCTCG--------TTTTGAACTC----------------------TGTACAGGAGGCACACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAATTCGCTCTCCATCTCCGGCAGA 'Setaria pumila E-b' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGT-AGAGCTTG---------------------CTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGCGCATGCGCACTTTTCGGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC----AGCT----CA-TGTT--GACA----TGTGCTTCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGTAGGTTGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCCCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATATAT----------CACA-------------TAACT---------------TCTCTTCAGAT----CGAGAAAGAA-CGCGC----CTGCCTG-TGTGTCCTCAAGG--------TTTATT----CGC--TCAATTT-GGCCTAC----GTCCTCG--------CTTTCAACTCGGATC--------TTTTTTTCTGGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCTGGCAGA 'Setaria sphacelata A-b' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGT-AGAG------------------CTTGCTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGCGCATGCGCACTTTTCTGCTTGCTTTTGCATAGCG--GGCTATAGTTTATGCATGCTACTC----AGCT----CA-TGTT--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCTGTGGGTGTTTGTAGGTTGGCGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCCCGGCAGCGCACGGCACTCGGCGGGCTTGGCGCAGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATATAT----------CACC---TAG-TAG---TAGCC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC----CTGCCTG-TGTGTTCTCAAGG--------TTTATT----CGC--TCACGTT-GGCCTAC----GTCCTCG--------CTTTCAACTCG----------TTTTTTTTTTCTGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCTCTCTCCATCTCTGGCAGA 'Setaria verticillata 1-O' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGT-AGAGCTTG---------------CTGCTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCAAGCTACTC----GGCT----CA-TGTA--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCGCAGGAGCTGGAAGCCCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCTCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATGTA---------------CATCAGCTAG---TAACT---AACAATTATATTTCTTTTCAGAT----CGACGAAGAA-CGCGT----CTTTCTG-TG--CCCTCAAGGAGTCATGGTTTATTCACTCACGGT-------GGCCTAC----GTCCTCG---------TTTGAACTC----------------------TGTACAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTGTCCATCTCAGGCAGA 'Setaria verticillata 2-G-a' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCTT--AACAGT-AGAGCTTG------------------CTGCTGCTGCTTCCGGTTCTGCTC--GACAAGTTTCTCC--------TACATCTGATGTCAAGC-----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCG--GGCTATAGTTTATGCATGCTACTC----AGCT----CA-TGTT--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGTAGGTTGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCACAGGAGCTGGAAGCCCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATA---------------CACAACAGCTAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC----TTGTCCG-TGTGTTCTCAA--------TTTTTACTCACTCACGTT-------GGCCTAC----GTCCTCG--------CTTTCAACTCGG----------TTTTTTTTTCTGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAACTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Setaria viridis 2-C' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCTT--AACAGT-AGAGCTTG------------------CTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTGC--------TACATCTGATGTCAAGC-----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCG--GGCAATAGTTTATGCATGCTACTC----AGCT----CA-TGTT--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGTAGGTTGGGGCGCCACCGGAGGTGTCGGCGAGGCTGACGGCGATGGCACAGGAGCTGGAAGCCCGGCAGCGCACGGCGCTCGGCGGGCTCGGTGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATA-------------CACA--ACAGCTAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC----TTGTCTG-TGTGTTCTCAA-------TTTTTTACT----CAC--TCACGTT-GGCCTAC----GTCCTCG--------CTTTCAACTCGG----------TTTTATATTATGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA Spinifex_sericeus_H TCGAGTGCCAGAGGGCAAGTAG---------------------CAGTCTT--AACAGT-AGAGAACTAGAGA----------TTGCTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCGCGGGCTATAGTTTATGCATGCTGCTC----AGCT----CA-TGTT--GACA----TGTGCATCC----AGCA--TTCAGAACTTTTGGCCGTGGGTGTTTGTAGGTTGGGGCGCCGGCGGAGGTGTCGGCGAGGCTGACGGCGATGGCACAGGAGCTGGAAGCCCGGCAGCGCACGGCGCTC---------GGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTGTA-------------CACA--TCAGCTAG---TAACC---AACAATT-----TCTCTTCTGAT----CGAGAAAGAA-CGCGC----CTGTCTG-TGTGTTCTCAA-------TTTTTGTT-CACTCAT----ACGTT-GGCCTAC----GTCCTCGGCTCCTCGCTTTCAACCCC---------TGTTTTTTTTTCTGCGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAAGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Stenotaphrum secundatum I-b' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGT-AGCGCTTG---------------CTGCTGCTGCTGCTTCCGGTTCTGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTCGCTTTTTAATAGCA--GGCTATAGTTTATGCATGCTACTC----AGCT----CA-TGTGT---CA----TGTGCATCT---TAGCG--TTCAGAACTTTTTGCCGTGGGTGTTTGCAGGTGGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGTCGGCGATGGCGCAGGAGCTGGAAGCACGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATGTATATAT------CACCC--------------------AACAATT-----TCTCTCCAGAT----CGAGAAAGAA-CGCGC----CTGTCTG-TGTGTGCTCAAGG-------TTTTATTCAGTCACGGTCACGGT-GGCGTAC----GTGCTCG--------CTCTCATCTCG--------------TCTTCTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Zuloagea bulbosa 1-R-b' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCTT--AACAGT-AGAGCTTG------------------CTGCTGCCGCTTCCGGTTCTCCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCG--GGCTATAGTTTATGCATGCTACTC----AACT----CA-TGTTT-GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGTAGGTTGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGACGCAGGAGCTGGAAGCCCGGCAGCGCACGGCGTTCGGTGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATA---ATAT------CACC-------TAGCGGCAACC---AGCCATT-----TCTCTCCAGAT----CGAGAAAGAA-CGCGC----CTTTCTG-TGTGTCTTCA---------------TTCTGTCACGGTCACGGT-GGCGTAC----GTGCTCG--------CTCTCAGCTCG--------------TCTTCTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCTGGCAGA 'Zuloagea bulbosa 2-R-b' TCGAGTGCCAGAAGGCAAGTAG------------------------------------CAGAGCTTG---------------------CTGCTTCTTCCGTTTCTGCTC--GAGAAGTTTCTCCTACATGGTTACATCTGATGTCAAGCA----TGG-CGC--ATGGACACTTTTCTACTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTCGATCAGCTCG-----TGTA--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGTGCGCCGTCGGAGGTGTCGGCGAGGCTGACGGCGATGACGCAGGAGCTGGAAGCCCGGCAGCGCACGGCGTTCGGTGGGCTCGGCGCCGCCACGGAGCCGGAGCTG-ATCAGTTCATGGTGAGCTATA---ATAT------CACC-------TAGCGGCAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC----CTATCTG-TGTGTTCTCACGG-------TTTAATTCTGTCACGGTCACGGT-GGCGTAC----GTGCTCG--------CTCTCAGCTCG--------------TCTTGTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAAACGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Zuloagea bulbosa 3-O-a' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGT-AGCGCTTG------------------CTTCTGCTTCTTCCGTTTCTGCTC--GAGAAGTTTCTCCTACATAGCTACATCTGATGTCAAGCA----TGG-CGC--ATGGACACTTTTCTACTTGCTTTTGCATAGCA--GGCTATAGTTAATGCATGCTACTCGATCAGCTCG-----TGTA--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGTGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGACGCAGGAGCTGGAAGCCCGGCAGCGCACGGCGTTCGGTGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATA---ATAA------CACC-------TAGCAGTAACC---AACAATT-----TCTCTTCAGAT----CGTGAAAGAA-CGCGC----CTTTCGG-TGTGTCTTCA---------------TTCTGTCACGGTCACGGT-GGCGTAC----GTGCTCG--------CTCTCAGCTCG--------------TCTTGTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTGAACTCGCTCTCCATCTCTGGCAGA 'Zuloagea bulbosa 4-F-b' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCT---AACAGT-AGCGCTTG------CTGCTGCTGCTGCTGCTGCTGCTTCCGGTTCTGCTG--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTGCTTGCTTTTGCATAGCA--GGCTATAGTTTATGCATGCTACTC----AGCTCGTGTA-TGTA--GACA----TGTGCATCT----AGCG--TTCAGAACTTTTGGCCGTGGGTGTTTGCAGGTGGGTGCGCCGCTTGAGGTGTCGGCGAGGCTGACGGCGATGACGCAGGAGCTGGAAGCCCGGCAGCGCACGGCGTTCGGTGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATA---ATAT------CACC-------TAGCGGCAACC---AACAATT-----TCTCTCCAGAT----CGAGAAAGAA-CGCGC----CTTTCTG-TGTGTCTTCA---------------TTCTGTCACGGTCACGGT-GGCGTAC----GTGCTCG--------CTCTCAGCTCG--------------TCTTCTCCGTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAACTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCTGGCAGA 'Zygochloa paradoxa 1-G-a' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCTT--AACAGT-AGAGCTCG------------------CTGCTGCTGCTTCCGGTTCCGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTGCTCCTTGCTTTTGCATAGCG--GGCCATAGTTTATGCATGCTACTCAC--TGCT----CAATGTT--GACA----TGTCCATCT----AGCG--TTCAGAACTTTTGGCCGTGTGTGTTTGTAGGTTGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCACAGGAGCTGGAAGCCCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATA-------------CACA--TCAGCTAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC----CTACCTG-TGT--TGTTAA-------TTTTT-ATT----CA----CACGTT-GGCCTAC----GTCCTCG--------CTTTCAACCC----------TGTT--TTTTTTTCTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAGTCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA 'Zygochloa paradoxa 2-G-a' TCGAGTGCCAGAAGGCAAGTAG---------------------CAGTCTT--AACAGT-AGAGCTCG------------------CTGCTGCTGCTTCCGGTTCCGCTC--GAGAAGTTTCTCC--------TACATCTGATGTCAAGCA----TGG-CGC--ATGCACACTTTTCTCCTTGCTTTTGCATAGCG--GGCCATAGTTTATGCATGCTACTCAC--TGCT----CAATGTT--GACA----TGTCCATCT----AGCG--TTCAGAACTTTTGGCCGTGTGTGTTTGTAGGTTGGGGCGCCGCCGGAGGTGTCGGCGAGGCTGACGGCGATGGCACAGGAGCTGGAAGCCCGGCAGCGCACGGCGCTCGGCGGGCTCGGCGCCGCCACGGAGCCGGAGCTGGATCAGTTCATGGTGAGCTATA-------------CACA--TCAGCTAG---TAACC---AACAATT-----TCTCTTCAGAT----CGAGAAAGAA-CGCGC----CTACCTG-TGTGTTGTTAA-------TTTTT-ATT----CAC--TCACGTT-GGCCTAC----GTCCTCG--------CTTTCAACCC----------TGTT-TTTTTTTTCTGCAGGAGGCATACCATGAGA--------TGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGGAGGGTGGAATCGCAGCTCAACTCGCTCTCCATCTCCGGCAGA ; END; [ The following blocks are output data for analysis step 3430 ] BEGIN TREES; TITLE Tb8203; LINK TAXA = TaxaForAnalysisStep3430; TREE Fig_5_kn1 = [&R] ('Panicum miliaceum I-a',((((('Cenchrus calyculatus A-a','Cenchrus myosuroides E-b','Cenchrus pilosus E-a'),('Cenchrus ciliaris 2-D-a',(Cenchrus_echinatus_D,'Cenchrus setigerus F-b'))),(('Pennisetum alopecuroides B-a',('Pennisetum glaucum E-b',Pennisetum_villosum_F)),'Pennisetum flaccidum 1-B')),(((('Paspalidium aversum G-b','Paspalidium distans 2-F-a'),'Paspalidium jubiflorum E-a'),'Stenotaphrum secundatum I-b'),('Setaria grisebachii F-a',((('Zuloagea bulbosa 4-F-b',('Zuloagea bulbosa 3-O-a','Zuloagea bulbosa 2-R-b')),'Zuloagea bulbosa 1-R-b'),'Ixophorus unisetus 1-T-a')))),(((('Setaria italica 1-H','Setaria viridis 2-C'),'Setaria verticillata 2-G-a'),('Pseudoraphis paradoxa F-b',(Spinifex_sericeus_H,('Zygochloa paradoxa 1-G-a','Zygochloa paradoxa 2-G-a')))),('Setaria geniculata G-a',(('Setaria parviflora G-a','Setaria sphacelata A-b'),'Setaria pumila E-b')))),(((Setaria_barbata_A,'Setaria poiretiana 1-B-a'),('Setaria palmifolia F-a','Setaria poiretiana 2-B-b')),'Setaria verticillata 1-O')); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr966] END;