#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 3:39 GMT TreeBASE (cc) 1994-2008 Study reference: Brumfield R., & Edwards S. 2007. Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes. Evolution, 61(2): 346-367. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1759] [ The following blocks are input data for analysis step 3509 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3509; DIMENSIONS NTAX=29; TAXLABELS Cymbilaimus_lineatus Frederickena_unduligera Sakesphorus_bernardi Sakesphorus_canadensis Sakesphorus_luctuosus Thamnomanes_caesius Thamnoophilus_doliatus Thamnophilus_aethiops Thamnophilus_amazonicus Thamnophilus_aroyae Thamnophilus_atrinucha Thamnophilus_bridgesi Thamnophilus_caerulescens Thamnophilus_cryptoleucus Thamnophilus_divisorius Thamnophilus_insignis Thamnophilus_murinus Thamnophilus_nigriceps Thamnophilus_nigrocinereus Thamnophilus_palliatus Thamnophilus_praecox Thamnophilus_punctatus Thamnophilus_ruficapillus Thamnophilus_schistaceus Thamnophilus_stictocephalus Thamnophilus_tenuepunctatus Thamnophilus_torquatus Thamnophilus_unicolor Thamnophilus_zarumae ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1665] TITLE bf5a; LINK TAXA = TaxaForAnalysisStep3509; DIMENSIONS NCHAR=532; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Cymbilaimus_lineatus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATG-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTCATTCAGGAAAGTCTCGTTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAATGTATATGTGGGCAGAGAAGAAGAGCCTGGCTCATTTCTTATT-ATGCACTAGGCAAAAGAACAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAGGTACTAC-TTAAGTATGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGC---TCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTCCTTTTGTACTGGTAATTTAATCTGAAATACTGTTGCTCCTGTAGGCT Frederickena_unduligera AGGTTAGTGTGAAATAACTGTGTTGTTAAAATAACCAATTGATGGATGCTACAAAAAATAACTAGTGATTTGCATTTTATACAAACAAATATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAAT-TAACTCATTCAGGAAAGTCTCATTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAATGTATATGTGGGCAGAGAAGAAGAGCCTGGCTCATTTCTTGCT-GTGCACTAGGCAAAAGAACAGGGCATTCCTTCAATTTCTGCTTTTTTTTCACCTTTCCTTATGAAGCAAGGTGCTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTCCTTTTGTACTGGCAATTTAATCTTAAATACTGTTGCTCCTGTAGGCT Sakesphorus_bernardi AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATGAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTATTTGAGAATTAAATCTATTTCATTCAGGAAAGTCTCGTTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGCAACTGGAAATAAACTGCATAGGTATCTTCCGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTCCACCTTTCCTTATGAAGCAAGGTACTAC-TTAAGTGTGAGCAAAAATCACAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTGTCTTAGTGGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGTAGGCT Sakesphorus_canadensis AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGAT-CTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGTAGTGATACCTTTTGTAGTTACTTGAGAATTAACTCTAACTCATTCAGGAAAGTCTCG{CT}TGGTCATCTGCTGATACGTGGTTACATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAACTGATAATGTATATGCGGGCAGAGAAGAAGAGCCTGGCTCATTTCTTACT-AGGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAGGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATCCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCCTATTAGTTGATGCTCCTTTTGTACTGGCAATGTAATCTTAAATACTGTTGCTCCTGTAGGCT Sakesphorus_luctuosus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGAT-CTGCCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGTAGTGATACCTTTTGTAGTTACTTGAGAATTAACTCTAACTCATTCAGGAAAGTCTCGTTGGTCATCTGCTGATACAGGGTTACATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAACTGATAATGTATATGCGGGCAGAGAAGAAGAGCCTGGCTCATTTCTTACT-AGGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAAGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATCCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTCCTTTTGTACTGGCAATGTAATCTTAAATACTGTTGCTCCTGTAGGCT Thamnomanes_caesius AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAAGTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTCGTAGTTACTTGAGAATTAAATCTAACTCATTCAGGAAAGTCTCGTTGGTCATCTACTGATACGTGGTTGCATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAATGTATATGTGGGCAGAGAAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGAGCATTCCTTCAATTTCTGCTTTTTTTTAACCTTTCCTTATGAAGCAAGGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTGGTAGTTGATGCTCCTTTTGTACTGGCAATTTAACCTTAAATACTGTTGCTCCTGCAGGCT Thamnoophilus_doliatus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATGTAACTCATTCAGGAAAGTCTCGTTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGCAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTTATTTCTTACT-ATGCACCAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTTTTTTTTCACCTTTCCTTACGAAGCAAGGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTTTGTCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGTAGGCT Thamnophilus_aethiops AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTTATTCAGGAAAGTCTCGCTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGCAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAAGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACTTGCTTCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGCAGGCT Thamnophilus_amazonicus AGGTTAGTGTGAAATAACTGTCTTGTTAAAATATTAATT-GATGGATGCTTCCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATGTAACTCATTCAGGAAAGTCTCGCTGGTCATCTGCTGATACATGATTGCATACTTCTATAATGCAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAA{CT}GGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTCCACCTTTCCTTATGAAGCAAGGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTGTCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGTAGGCT Thamnophilus_aroyae AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTTATTCAGGAAAGTCTCGCTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGCAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCATTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAAGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACTTGCTTCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGCAGGCT Thamnophilus_atrinucha AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATGAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTATTTGAGAATTAAATCTATTTCATTCAGGAAAGTCTCGTTGGTCATCTGCTGATACATGGTTGCATACTTCTATCATGCAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTCCACCTTTCCTTATGAAGCAAGGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTGTCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCTTGTAGGCT Thamnophilus_bridgesi AGGTTAGTGTGAAATAACTGTGTTGTTAAAATACGAATT-GATGGATGCTACCAAAAATAATTAGTGATTTACATTTTATGCAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTATTTCATTCAGGAAAGTCTCGTTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGT{AG}ACCAGAATGGATAATGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAACCAAGGTACTAT-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGAGTCTTAGTAGTTGATGCTCCTTTTGTACTGGCAATGTAATCTTAAATACTGTTGCTCCTGCAGGCT Thamnophilus_caerulescens AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGTAGTGATACCTTTTGTAGTTACTTGAGAATTAAATGTAACTCATTCAGGAAGGTCTCGCTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCT{CT}ATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAAGTACTAC-TTAAGTGTGAGCAAAAATCACAAAGCTGAGGTCATAAGCAGTGAAGGACTTGCTTCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATTCTAAATACTGTTGCTCCTGCAGGCT Thamnophilus_cryptoleucus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTTATTCAGGAAAGTCTCGCTGGTCATCTGCTGATACATGGTTGCATACTTCTAGAATGAAACTGGAAATAAACTGCATAGGTACCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAAGTACTACTTTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACTTGCTTCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATTCTAAATACTGTTGCTCCTGTAGGCT Thamnophilus_divisorius AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATG?ATT-GATGGATGC?ACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATAACTTTTGTAGTTACTTGAGAATTAAATCTAACTCATTCAGGAAAGTCTCGCTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTACATGTGGGCAGAGGAGAAGAGCCTGGCTGATTTCTTACT-ATGCACTAGGC{AC}AAAGACCAGGGCATTCCTTCAATTTCTTTTT-TTTTTCACCTTTCCTTATGAAGCAAAGTACTAC-CTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGA{AG}ATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTA{AG}ATACTGTTGCTCCTGTAGGCT Thamnophilus_insignis AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATGAATT-GATGGATGCTACCAAAAATAATTAGTGATTTACATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGATAATTAAATCTAACTCATTCAGGAAAGTCTCGCTGGTCATCTGCTGATACATGATTGCATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAATGTATATGTGGGCAGAGGAGAAGAGCCTGGCTGATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGGTT-TTTTTCACCTTTCCTTATGAAGCGAAGTACTAC-CTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCCGCAGGCT Thamnophilus_murinus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTAATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTCATTCAGGAAAGTCTCATTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAAAAGAAGAGTCTGGCTCATTTCTTACTAATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAGGTACTAT-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTCCTTTTGTACCGGCAATATAATGTTAAATACTGCTGCTCCTGTAGGCT Thamnophilus_nigriceps AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATATAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTTATTCAGGAAAGTCTCGCTGGTCATCTGCTGATACATGGTTGCA{CT}ACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTTTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGGAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAAGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTACTTATGAAGCAAAGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACTTGCTTCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGCAGGCT Thamnophilus_nigrocinereus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTTATTCAGGAAAGTCTCGCTGGTCATCTGCTGATAC{AG}TGGTTGCATACTTCTAGAATGAAACTGGAAATAAACTGCATAGGTACCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAAGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACTTGCTTCAAGGAAGCCATATGCTCTTCTTG{GT}CCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATTCTAAATACTGTTGCTCCT{AG}TAGGCT Thamnophilus_palliatus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGCGATTTACATTTTATACGAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTCATTCAGGAAAGTCTCGTTGGTCATCTGCTGATACATGGTTGCATACTTCTACAATGCAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACCAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAGGTACTAT-TTAAGTGTGAGCAAAAATCGCAAAGCTAAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTTTGTCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGTAGGCT Thamnophilus_praecox AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTTATTCAGGAAAGTCTCGCTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAAC{AG}TATATGTGGGCAGAGGAGGAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAAGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACTTGCTTCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGCAGGCT Thamnophilus_punctatus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACTTTTTGTAGTTACTTAAGAATTAAATCTAACTCATTCAGGAAAGTCTCGCTGGTCATCTGCTGATACATGGTTGCATACTTCTAGAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAAGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAACTGAGGTCATAAGCAGTGAAGGACTTGCTTCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGCAGGCT Thamnophilus_ruficapillus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAG{CT}GATTTACATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTCATTCAGGAAAGTCTCGTTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGCAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAATGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACCAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCAGCTTTCCTTATGACGCAAGGTACTAC-TTACGTGTGAGTAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTTTGTCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATC{CT}TAAATACTGTTGCTCCTGTAGGCT Thamnophilus_schistaceus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACAAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTCATTCAGGAAAGTCTCATTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAAAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAGGTACTAC-TTAAGTGTGAGCAAAAATCACAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATCCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCGTAAATACTGTTGCTCCTGTAGGCT Thamnophilus_stictocephalus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTCATTCAGGAAAGTCTCGCTGGTCATCTGCTGATACATGGTTGCATACTTCTAGAATGAAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCATGGCATTCCTTCAATTTCTGCTT-TTTTTCACCCTTCCTTATGAAGCAAAGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACTTGCTTCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGAACTGGCAATTTAATCCTAAATACTGTTGCTCCTGCAGGCT Thamnophilus_tenuepunctatus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGCGATTTACATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTCATTCAGGAAAGTCTCGTTGGTCATCTGCTGATACATGGTTGCATACTTCTACAATGCAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACCAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAGGTACTAT-TTAAGTGTGAGCAAAAATCGCAAAGCTAAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTTTGTCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGTAGGCT Thamnophilus_torquatus AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGCGATTTACATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTCATTCAGGAAAGTCTCGTTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGCAACTGGAAATAAACTGCATAGGTATCTTTTGTGACCAGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACCAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCAGCTTTCCTTATGACGCAAGGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCTGCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTTTGCCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGTAGGCT Thamnophilus_unicolor AGGTTAGTGTGAAATAACTGTGTTGTTAAGATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTGCATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATCTAACTTATTCAGGAAAGTCTCGCTGGTCATCTGCTGATACATGGTCGCATACTTCTATAATGCAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCAGAATGGATAACGTATATGTGGGAAGAGGAGAAGAGCCTGGCTCATTTCTTACT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAAGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACTTGCTTCAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTGTATCTTAGTAGTTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGCAGGCT Thamnophilus_zarumae AGGTTAGTGTGAAATAACTGTGTTGTTAAAATATTAATT-GATGGATGCTACCAAAAATAATTAGTGATTTACATTTTATACAAACAAGTATGGAGTGATACCTTTTGTAGTTACTTGAGAATTAAATGTAACTCATTCAGGAAAGTCTCGTTGGTCATCTGCTGATACATGGTTGCATACTTCTATAATGCAACTGGAAATAAACTGCATAGGTATCTTCTGTGACCGGAATGGATAACGTATATGTGGGCAGAGGAGAAGAGCCTGGCTCATTTCTTTCT-ATGCACTAGGCAAAAGACCAGGGCATTCCTTCAATTTCTGCTT-TTTTTCACCTTTCCTTATGAAGCAAGGTACTAC-TTAAGTGTGAGCAAAAATCGCAAAGCTGAGGTCATAAGCAGTGAAGGACCTGCT{AG}CAAGGAAGCCATATGCTCTTCTTGTCCTGAGATGAAGTTAGAAGGGCTTTGTCTTAGTAGCTGATGCTTCTTTTGTACTGGCAATTTAATCCTAAATACTGTTGCTCCTGTAGGCT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = bf5a) = N: 1-532; CODONPOSSET CodonPositions (CHARACTERS = bf5a) = N: 1-532; END; [ The following blocks are output data for analysis step 3509 ] BEGIN TREES; TITLE Tb8282; LINK TAXA = TaxaForAnalysisStep3509; TREE Fig._2d = [&R] (Cymbilaimus_lineatus,(Frederickena_unduligera,(((((Sakesphorus_bernardi,Thamnophilus_atrinucha),Thamnophilus_amazonicus),((Thamnoophilus_doliatus,Thamnophilus_zarumae),((Thamnophilus_palliatus,Thamnophilus_tenuepunctatus),(Thamnophilus_ruficapillus,Thamnophilus_torquatus)))),((((Thamnophilus_aethiops,Thamnophilus_aroyae,Thamnophilus_unicolor),(Thamnophilus_nigriceps,Thamnophilus_praecox)),Thamnophilus_caerulescens,((Thamnophilus_cryptoleucus,Thamnophilus_nigrocinereus),Thamnophilus_punctatus,Thamnophilus_stictocephalus)),(Thamnophilus_insignis,Thamnophilus_divisorius)),Thamnophilus_schistaceus),((Sakesphorus_canadensis,Sakesphorus_luctuosus),(Thamnophilus_bridgesi,Thamnophilus_murinus)),Thamnomanes_caesius))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4666] END;