#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 5:29 GMT TreeBASE (cc) 1994-2008 Study reference: Poon W., Shaw P., Simmons M., & But P. 2007. Cladistic analysis of Rutaceae subfamilies Rutoideae and Toddalioideae supports a "proto-Rutaceae" group. Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1770] [ The following blocks are input data for analysis step 3537 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3537; DIMENSIONS NTAX=19; TAXLABELS Fructus_Evodiae_ER1 Fructus_Evodiae_WZY2 Tetradium_austrosinense Tetradium_daniellii_633 Tetradium_daniellii_ET2 Tetradium_daniellii_NY4 Tetradium_daniellii_TB3 Tetradium_glabrifolium_R1 Tetradium_glabrifolium_R10 Tetradium_glabrifolium_R8 Tetradium_ruticarpum_N3 Tetradium_ruticarpum_N7 Tetradium_ruticarpum_N8 Tetradium_ruticarpum_TB1 Tetradium_ruticarpum_TB2 Tetradium_ruticarpum_ZX2 Tetradium_trichotomum_ET3 Tetradium_trichotomum_ET4 Zanthoxylum_schinifolium ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1821] TITLE ITS_2; LINK TAXA = TaxaForAnalysisStep3537; DIMENSIONS NCHAR=324; FORMAT DATATYPE=Standard SYMBOLS= "A C G T 4 5 6 7 8 9 B D E F H J K L M N P Q R 0 1 2" MISSING=? GAP= -; CHARSTATELABELS 323 ITS2_gap_68, 324 'ITS2 gap 188-190', ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Fructus_Evodiae_ER1 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGTCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAAAA---GCCTCTCGAGCTCTAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCATGGACCCTGATGCTCCGCGCAAGCGGTGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA01 Fructus_Evodiae_WZY2 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGTCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAAAA---GCCTCTCGAGCTCTAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCATGGACCCTGATGCTCCGCGCAAGCGGTGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA01 Tetradium_austrosinense AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCAGGGGGCCTGGCGGTGCGGGCGGATAATGGCCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAGAACAAGCCTCTCGAGCTCAAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCAGGGACCCTGACGCTCCGCGCAAGCGGCGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA00 Tetradium_daniellii_633 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCC-ACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGTCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACGATCGGTGGTGAAAACAAGCCTCTCGAGCTCACGTCGCGTGCCCGCTTCTCCGTTTCGGGACTCAGGGACCCTGACGCTCCGCGCAAGCGGCGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA10 Tetradium_daniellii_ET2 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCC-ACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGCCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTCAAAA---GCCTCTCGAGCTCTAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCAGGGACCCTGACGCTCCGCGCAAGCGGCGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA11 Tetradium_daniellii_NY4 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCC-ACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGTCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACGATCGGTGGTGAAAACAAGCCTCTCGAGCTCACGTCGCGTGCCCGCTTCTCCGTTTCGGGACTCAGGGACCCTGACGCTCCGCGCAAGCGGCGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA10 Tetradium_daniellii_TB3 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCC-ACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGTCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACGATCGGTGGTGAAAACAAGCCTCTCGAGCTCACGTCGCGTGCCCGCGTCTCCGTTTCGGGACTCAGGGACCCTGACGCTCCGCGCAAGCGGTGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA10 Tetradium_glabrifolium_R1 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCCGGGGGCCTGGCGGTGCTGGCGGATAATGGCCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAAAACAAGCCTCTCGAGCTCAAGTCGCGGGCCCGCGTCTCCGTTTCGGGACTCAGGGACCCTGGCGCTCCGCGCAAGCGGCGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA00 Tetradium_glabrifolium_R10 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCCGGGGGCCTGGCGGTGCTGGCGGATAATGGCCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAAAACAAGCCTCTCGAGCTCAAGTCGCGGGCCCGCGTCTCCGTTTCGGGACTCAGGGACCCTGGCGCTCCGCGCAAGCGGCGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA00 Tetradium_glabrifolium_R8 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCCGGGGGCCTGGCGGTGCTGGCGGATAATGGCCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAAAACAAGCCTCTCGAGCTCAAGTCGCGGGCCCGCGTCTCCGTTTCGGGACTCAGGGACCCTGGCGCTCCGCGCAAGCGGCGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA00 Tetradium_ruticarpum_N3 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGTCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAAAA---GCCTCTCGAGCTCTAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCATGGACCCTGATGCTCCGCGCAAGCGGTGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA01 Tetradium_ruticarpum_N7 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGTCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAAAA---GCCTCTCGAGCTCTAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCATGGACCCTGATGCTCCGCGCAAGCGGTGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA01 Tetradium_ruticarpum_N8 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGTCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAAAA---GCCTCTCGAGCTCTAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCATGGACCCTGATGCTCCGCGCAAGCGGTGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA01 Tetradium_ruticarpum_TB1 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGTCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTTGGCGACCGGAGCCGCGACAATCGGTGGTGAAAA---GCCTCTCGAGCTCTAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCAGGGACCCTGATGCTCCGCGCAAGCGGTGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA01 Tetradium_ruticarpum_TB2 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGTCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTTGGCGACCGGAGCCGCGACAATCGGTGGTGAAAA---GCCTCTCGAGCTCTAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCAGGGACCCTGATGCTCCGCGCAAGCGGTGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA01 Tetradium_ruticarpum_ZX2 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCCCACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGTCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAAAA---GCCTCTCGAGCTCTAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCATGGACCCTGATGCTCCGCGCAAGCGGTGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA01 Tetradium_trichotomum_ET3 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCC-ACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGCCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAAAA---GCCTCTCGAGCTCTAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCAGGGACCCTGATGCTCCGCGCAAGCGGCGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA11 Tetradium_trichotomum_ET4 AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCACCCC-ACCCCCACCCCGGGGGCCTGGCGGTGCGGGCGGATAATGGCCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCTCGGCGACCGGAGCCGCGACAATCGGTGGTGAAAA---GCCTCTCGAGCTCTAGTCGCGAGCCCGCGTCTCTGTTTCGGGACTCAGGGACCCTGATGCTCCGCGCAAGCGGCGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA11 Zanthoxylum_schinifolium AGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCGCCCC-ACCCCCGCCC-GGGGGCTTGGCGGCGAGGGCGGATAATGGCCTCCCGTGCGCTCCCCGCTCGCGGTTGGCCCAAATTCGAGTCCCCGGCGACCGGAGCCGCGACGATCGGTGGTGAAAACAAACCTCTCGAACACACGTCGCGTGCCCGGCTCTCCGTTTCGAGACTCAGGGACCCTGACGCTCCGCGCGAGCGGCGCTCGCATCGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATA10 ; END; [ The following blocks are output data for analysis step 3537 ] BEGIN TREES; TITLE Tb8310; LINK TAXA = TaxaForAnalysisStep3537; TREE ITS_2_Strict = [&R] (Zanthoxylum_schinifolium,((Tetradium_glabrifolium_R1,Tetradium_glabrifolium_R8,Tetradium_glabrifolium_R10),(((Fructus_Evodiae_WZY2,Fructus_Evodiae_ER1,Tetradium_ruticarpum_ZX2,Tetradium_ruticarpum_N3,Tetradium_ruticarpum_N7,Tetradium_ruticarpum_N8),(Tetradium_ruticarpum_TB1,Tetradium_ruticarpum_TB2)),Tetradium_trichotomum_ET3,Tetradium_trichotomum_ET4,Tetradium_daniellii_ET2),Tetradium_austrosinense),(Tetradium_daniellii_TB3,(Tetradium_daniellii_633,Tetradium_daniellii_NY4))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2705] END;