#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 5:27 GMT TreeBASE (cc) 1994-2008 Study reference: Poon W., Shaw P., Simmons M., & But P. 2007. Cladistic analysis of Rutaceae subfamilies Rutoideae and Toddalioideae supports a "proto-Rutaceae" group. Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1770] [ The following blocks are input data for analysis step 3539 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3539; DIMENSIONS NTAX=53; TAXLABELS Acronychia_pedunculata Acronychia_species_313 Bosistoa_medicinalis Casimiroa_edulis Clausena_lansium Dinosperma_melanophloium Euodia_hortensis_S68 Euodia_hortensis_S85 Euodia_pubifolia_8886 Halfordia_kendack Melicope_rubra Melicope_ternata_1759 Melicope_ternata_RBE9 Melicope_triphylla Melicope_vitiflora Murraya_kwangsiensis Orixa_japonica Phellodendron_amuranse Pitaviaster_haplophyllus Ptelea_augustifolia Ptelea_polyadenia Ruta_graveolens_R24 Ruta_graveolens_R25 Skimmia_anquetilia Skimmia_japonica_RBE3 Skimmia_japonica_RBE4 Skimmia_japonica_RBE5 Skimmia_japonica_subspecies_re Skimmia_laureola Tetradium_austrosinense Tetradium_daniellii_633 Tetradium_daniellii_AA13 Tetradium_daniellii_TB3 Tetradium_glabrifolium Tetradium_ruticarpum_N3 Tetradium_ruticarpum_N6 Tetradium_ruticarpum_N7 Tetradium_ruticarpum_N8 Tetradium_ruticarpum_TB1 Tetradium_ruticarpum_TB2 Tetradium_trichotomum_ET2 Tetradium_trichotomum_ET3 Tetradium_trichotomum_ET4 Toddalia_asiatica Toddalia_species_310 Zanthoxylum_armatum Zanthoxylum_nitidium Zanthoxylum_piperitum Zanthoxylum_schinifolium Zanthoxylum_simulans_AA20 Zanthoxylum_simulans_AA21 Zanthoxylum_simulans_ZX4 Zanthoxylum_stenophyllum ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1818] TITLE 'trnL-F spacer'; LINK TAXA = TaxaForAnalysisStep3539; DIMENSIONS NCHAR=413; FORMAT DATATYPE=Standard SYMBOLS= "A C G T 4 5 6 7 8 9 B D E F H J K L M N P Q R 0 1 2" MISSING=? GAP= -; CHARSTATELABELS 403 'trnL-F gap 43-45', 404 'gap 67-73', 405 'gap 78-82', 406 'gap 96-97', 407 'gap 129-133', 408 'gap 134-140', 409 'gap 204-208', 410 'gap 263-300', 411 gap_314, 412 'gap 318-330', 413 'gap 344-353', ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Acronychia_pedunculata CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTT---GTTAGTGGTTGAAAATTCGGTAGGTTTTTCATCTAGCCTACCCTACTCTT--TTCCATTTCAAA-GGGGATCTGGGCATTCTTTTTTTCTCTTATTACATATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCTGTTGAATAATTCCCAAACCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTCTCCT-CCCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG1001001211T Acronychia_species_313 CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTT---GTTAGTGGTTGAAAATTCGGTAGGTTTTTCATCTAGCCTACCCTACTCTT--TTCCATTTCAAA-GGGGATCTGGGCATTCTTTTTTTCTCTTATTACATATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCTGTTGAATAATTCCCAAACCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTCTCCT-CCCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG1001001211T Bosistoa_medicinalis CCATTTACTCCCTA-CCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGCCCAAATTTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTGCCAA-AGGGATCTGGGCATAATTTTTTT-------CTCTTATCACAAG--------TTGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTTTTTTTGAAGAT------TCAAGAAAAGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTTT---CTTTTTTAATTGACATAGACCCAAGTCCTCTAGTAAGATGAGGATGGTGTGTCG20110112112 Casimiroa_edulis CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTT---GTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCAGAATCTTTTT-------CTCTTATCACAAG--------TCATGTGGTATATACGATAGACGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTCTTCTTTTTGAAGAT------TCAAGAAATGAAATTCTCCT-CCCAAGACTCAAGACTTTTAATACTTTTTTG---CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATAAGGATGGTGTGTCG10110112102 Clausena_lansium CTATTGACTCCCTAACCATTTCTCCTACCTTCTCCTTTTTTT---GTTAGTGGTTCAAAAGTCGGTAGGTTTCTCAT-----CTATCCTCCTCTT--TTCCATTTCCAA-AAGGATATGGGCAGAATTTTTTT-------CTCTTATCACAAG--------ACGTATGGTCTATACGATATACGTAGAAATGAACAACTTTGA-----GCAAGGAATCCCCGTTTTAATGATTCCCAATACATATTATTGCTCATACTGAAACTTACAAAGTCTTCTTTTTGATGAT------TCAAGAAATGAAATTCCCTCTCCCAAGACT-------TTTAATCCTTTTT-----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGAACGGTGTGTCG20110112015 Dinosperma_melanophloium CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AGGGATCTGGGCATAATTTTTTTCTCTTATCACA-ATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACTTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGATGAAGATTCAAGAAAAGAAATTCCCCT-CCCAAGACT-------TTGAATACTTTTTT----CTTTTTGAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG2011001011T Euodia_hortensis_S68 CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTGAAAATTCGGT-------TCAT-----CTATCCTACTCTT--TTCCATTTCAAA-GGGAATCTGGGCATTCTT-----CTCTTATTACATATCACAAG--------TCGTGTGGTATATACGATAGGCGTATAAATGAACACCTTTGA-----GCAAGGAATCCCCAGTTGAATAATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAAAAAAGAAATTCACCT-CCCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG2111101211T Euodia_hortensis_S85 CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTGAAAATTCGGT-------TCAT-----CTATCCTACTCCT--TTCCATTTCAAA-GGGAATCTGGGCATTCTT-----CTCTTATTACATATCACAAG--------TCGTGTGGTATATACGATAGGCGTATAAATGAACACCTTTGA-----GCAAGGAATCCCCAGTTGAATAATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAAAAAAGAAATTCACCT-CCCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG2111101211T Euodia_pubifolia_8886 CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTGAAAATTCGGTAGGTTTTTCAT-----CTATCCTACTCTT--TCCCATTTCAAAAGGGAATCTGGGCATTCTT-----CTCTTATTACATATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCAGTTGAATAATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTCACCT-CCCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGACG2011101211T Halfordia_kendack CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTT?-----AGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACCCTT--TTCCATTTCAAA-AGGGATCTGGGCATTATTTTTTTTT-----CTCTTATCACA-----------------GTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAACCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG?0110T1211T Melicope_rubra CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTT---GTTAGTGGTTGAAAATTCG-TAGGTTTTTCATCTAGCCTACCCTACTCTT--TTCCATTTCAAA-GGGGATCTGGGCATTCTTTTTTTCTCTTATTACATATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCAGTTGAATAATTCCCAAACCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAATAAATTCTCCT-CCCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG1001001211T Melicope_ternata_1759 CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTT---GTTAGTGGGTGAAAATTCGGTAGGTTTTTCATCTAGCCTACCCTACTCTT--TTCCATTTCAAA-GGGGATCTGGGCATTCTTTTTTTCTCTTATTACATATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCAGTTGAATAATTCCCAAACCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTTAAGAT------TCAAGAAAAGAAATTATCCT-CCCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG1001001211T Melicope_ternata_RBE9 CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTT---GTTAGTGGTTGAAAATTCGGTAGGTTTTTCATCTAGCCTACCCTACTCTT--TTCCATTTCAAA-GGGGATCTGGGCATTCTTTTTTTCTCTTATTACATATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCAGTTGAATAATTCCCAAACCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTTAAGAT------TCAAGAAAAGAAATTATCCT-CCCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG1001001211T Melicope_triphylla CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTT---GTTAGTGGTTGAAAATTCGGTAGGTTTTTCATCTAGCCTACCCTACTCTT--TTCCATTTCAAA-GGGGATCTGGGCATTCTTTTTTTCTCTTATTACATATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCAGTTGAATAATTCCCAAACCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTCTCCT-ACCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG1001001211T Melicope_vitiflora CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTGAAAATTCGGTAGGTTTTTCAT-----CTATCCTACTCTT--TTCCATTTCAAA-GGGAATCTGGGCATTCTT-----CTCTTATTACATATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCAGTTGAATAATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAATATTCTTTTTGAAGAT------TCAAGAAAAGAAATTCACCT-CCCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG2011101211T Murraya_kwangsiensis CTATTGACTCCCTAACCATTTCTCCTACCTTCTCCTTTTTTT---GTTAGTGGTTCAAAAGTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-ACGGATATGGGCAGAATTTTTTT-------CTCTTATCACAAT??--CAAGCCGTATGGTCTATACGATATACGTAGAAACGAACACCTTTGA-----GCAAGGAATCCCCGTTTTAATGATTCCCAATCCATATTATTGTTCATACTGAAACTTACAAAGTCTTCTTTTTGATGAT------TCAAGAAATGAAATTCCCCT-CCCAAGACT-------TTTAATCCCTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGAACGGTGTGTCG1011011211T Orixa_japonica CCATTCACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCAGAATTTTTTT-------CTCTTATCACAAGTTGTCAAGTTGTGTGGTATATACGATAGACGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTCTTCTTTTTGAAGAT------TCAAGAAATGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTT---------TTAATTGACATAGACCAAAGTCATCTAGTAAGATCAGGATGATGTGTCG20110112111 Phellodendron_amuranse CCATTGACTCCCTAACCCTTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTTTT-----CTCTTATCACAAG--------TTGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAATTTACAAAGTATTCTTTGTGAAGAT------TCAAGAAAAGAAATTCCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG10110T1211T Pitaviaster_haplophyllus CCATTTACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTGAAAATTCGGTAGGTTTTTCAT-----CTATCCTACTCTT--TTCCATTTCAAA-GGGAATCTGGGCATTCTT-----CTCTTATTACATATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCAGTTGAATAATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTCTTCTTTTTGAAGAT------TCAAGAAAAGAAATTCACCT-CCCAAGACT-------TTTAATACTTTTTT----CTTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG2011101211T Ptelea_augustifolia CCATTGACCCCCTAACCGTTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAAATTTGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTT-------CTCTTATCCCAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACCCCTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTTTTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAATGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTTTTTTCTTTTTTAATTGACATAGACCCAAGTCATCGAGTAAGATGAGGATGGTGTGC--20110112110 Ptelea_polyadenia CCATTGACCCCCTAACCGTTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAAATTTGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTTTTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAATGAAATTCCACT-CCCAAGACT-------TTTAATACTTTTTTTTTTCTTTTTTAATTGACATAGACCCAAGTCATCGAGTAAGATGAGGATGGTGTGC--20110112110 Ruta_graveolens_R24 TCATTGATTCCTGAACCATTTCGCCTACCCTCTGCTTTCCTTTTCTTTTTTTGTTAGTGGTTCACAA----???AAT-----CTATTCGACCCTAGATTCCATTTACAA-AAAGATCTGGGCAGCATTTTTTTATCTT--???TTATCACAAG--------TTGTGTGGTATATATGATATACATATAAATGAGCACCTTTGA-----GCAAGAAATCCCCGTTTGAATGATTCCCAATTCATATTATTGCTCAGACTGAAACTTACAAAGTCTTCTTTTTGAATTGAAGGATTCACGAAATGAAATTCCCCT-CCCAAGACT-------TTTAAGCCCTTTT?------TTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGAGGGTGGGGCG02100210114 Ruta_graveolens_R25 TCATTGATTCCTGAACCATTTCGCCTACCCTCTGCTTTCCTTTTCTTTTTTTGTTAGTGGTTCACAA----???AAT-----CTATTCGACCCTAGATTCCATTTACAA-AAAGATCTGGGCAGCATTTTTTTATCTT--???TTATCACAAG--------TTGTGTGGTATATATGATATACATATAAATGAGCACCTTTGA-----GCAAGAAATCCCCGTTTGAATGATTCCCAATTCATATTATTGCTCAGACTGAAACTTACAAAGTCTTCTTTTTGAATTGAAGGATTCACGAAATGAAATTCCCCT-CCCAAGACT-------TTTAAGCCCTTTT?------TTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGGAGGGTGGGGCG02100210114 Skimmia_anquetilia CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTTGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCAGAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGACGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTCTTCTTTTTGAAGAT------TCAAGAAATGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTT---------TTTATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG20110112111 Skimmia_japonica_RBE3 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTTGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCAGAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGACGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTCTTCTTTTTGAAGAT------TCAAGAAATGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTT---------TTTATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG20110112111 Skimmia_japonica_RBE4 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTTGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCAGAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGACGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTCTTCTTTTTGAAGAT------TCAAGAAATGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTT---------TTTATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG20110112111 Skimmia_japonica_RBE5 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTTGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCAGAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGACGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTCTTCTTTTTGAAGAT------TCAAGAAATGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTT---------TTTATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG20110112111 Skimmia_japonica_subspecies_re CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTTGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCAGAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGACGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTCTTCTTTTTGAAGAT------TCAAGAAATGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTT---------TTTATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG20110112111 Skimmia_laureola CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTTGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCAGAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGACGTAGAAATGAACACCTTTGA-----GCAAGGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTCTTCTTTTTGAAGAT------TCAAGAAATGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTT---------TTTATTGACATAGACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG20110112111 Tetradium_austrosinense CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTGTTTTGTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTTT------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG0011051211T Tetradium_daniellii_633 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCTTTTTTTTTT-GTTAGCGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATATGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCGT011011211T Tetradium_daniellii_AA13 CCATTGGCTCCCTAACCATTTCTCCTACCCTCTCTTTTTTTTTT-GTTAGCGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATATGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCGT011011211T Tetradium_daniellii_TB3 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCTTTTTTTTTTTGTTAGCGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTAGATATGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG0011011211T Tetradium_glabrifolium CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTGTTTTGTTAGTGGTTTAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTTTT-----CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG00110T1211T Tetradium_ruticarpum_N3 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTGTTTTGTTAGTGGTTTAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTTT------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG0011051211T Tetradium_ruticarpum_N6 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTGTTTTGTTAGTGGTTTAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTTT------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG0011051211T Tetradium_ruticarpum_N7 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTGTTTTGTTAGTGGTTTAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTTT------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG0011051211T Tetradium_ruticarpum_N8 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTGTTTTGTTAGTGGTTTAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTTT------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG0011051211T Tetradium_ruticarpum_TB1 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTGTTTTGTTAGTGGTTTAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTTTT-----CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG00110T1211T Tetradium_ruticarpum_TB2 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTGTTTTGTTAGTGGTTTAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTTTT-----CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG00110T1211T Tetradium_trichotomum_ET2 ---------------CCATTTCTCCTACCCTCTCCTTTTTGTTTTGTTAGTGGTTTAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTTTT-----CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG00110T1211T Tetradium_trichotomum_ET3 ---------------CCATTTCTCCTACCCTCTCCTTTTTGTTTTGTTAGTGGTTTAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTTT------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG0011051211T Tetradium_trichotomum_ET4 ---------------CCATTTCTCCTACCCTCTCCTTTTTGTTTTGTTAGTGGTTTAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATCATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACATCTTTGA-----GCAAAGAATCCCCATTTGAATGATTCCCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTTCCCT-CCCAAGACC-------TTTAATACTTTTTT----CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGTTGTGTCG0011011211T Toddalia_asiatica CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGATTTGAGCAAGGAATCCCCATTTGAATGATTCTCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTCCCCT-CCCAATACT-------TTTAATACTTTTTTT---CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG10110102112 Toddalia_species_310 CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGATTTGAGCAAGGAATCCCCATTTGAATGATTCTCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTTT---CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG10110102112 Zanthoxylum_armatum CCATTGACTTCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGCCCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGATTTGAGCAAGGAATCCCCATTTGAATGCTTCTCAATCCATATTATTGCTCATACTGAAA--------------------------------------AAGAAATTCCCCT-CCC-------------TTTAATACTTTTTTT---CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG10110101122 Zanthoxylum_nitidium CCATTGACTTCCTAACCATTTCTCCTACCCTTTCCTTTTTTTT--GTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGATTTGAGCAAGGAATCACCATTTGAATGATTCTCAATCCATATTATTGCTCATACTGAAA--------------------------------------AAGAAATTCCCCT-CCC-------------TTTAATACTTTTTTT---CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG10110101122 Zanthoxylum_piperitum CCATGGACTTCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAACTTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGATTTGAGCAAGGAATCCCCATTTGAATGATTCTCAATCCATATTATTGCTCATACTGAAA--------------------------------------AAGAAATTCCCCT-CCC-------------TTTAATACTTTTTTT---CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG10110101122 Zanthoxylum_schinifolium CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAAATTCGGTAGATTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGATTTGAGCAAGGAATCCCCATTTGACTGATTCTCAATCCATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTCCCCT-CCCAAGACT-------TTTAATACTTTTTTT---CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG10110102112 Zanthoxylum_simulans_AA20 CCATTGACTTCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGATTTGAGCAAGGAATCCCCATTTGAATGATTCTCAATCCATATTATTGCTCATACTGAAA--------------------------------------AAGAAATTCCCCT-CCC-------------TTTAATACTTTTTTT---CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG10110101122 Zanthoxylum_simulans_AA21 CCATTGACTTCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGATTTGAGCAAGGAATCCCCATTTGAATGATTCTCAATCCATATTATTGCTCATACTGAAA--------------------------------------AAGAAATTCCCCT-CCC-------------TTTAATACTTTTTTT---CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG10110101122 Zanthoxylum_simulans_ZX4 CCATGGACTTCCTAACCATTTCTCCTACCCTCTCCTTTTTTTT--GTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTT-------CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTAGAAATGAACACCTTTGATTTGAGCAAGGAATCCCCATTTGAATGATTCTCAATCCATATTATTGCTCATACTGAAA--------------------------------------AAGAAATTCCCCT-CCC-------------TTTAATACTTTTTTT---CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG10110101122 Zanthoxylum_stenophyllum CCATTGACTCCCTAACCATTTCTCCTACCCTCTCCTTTTTTT---GTTAGTGGTTCAAAATTCGGTAGGTTTCTCAT-----CTATCCTACTCTT--TTCCATTTCCAA-AAGGATCTGGGCATAATTTTTTTTTT----CTCTTATCACAAG--------TCGTGTGGTATATACGATAGGCGTCGAAATGAACACCTTTGATTTGAGCAAGGAATCCCCATTTGAATGATTCTCAATCGATATTATTGCTCATACTGAAACTTACAAAGTATTCTTTTTGAAGAT------TCAAGAAAAGAAATTCCCCTTCCCAAGACT-------TTTAATACTTTTTTT---CTTTTTTAATTGACATAAACCCAAGTCATCTAGTAAGATGAGGATGGTGTGTCG20110402012 ; END; [ The following blocks are output data for analysis step 3539 ] BEGIN TREES; TITLE Tb8312; LINK TAXA = TaxaForAnalysisStep3539; TREE 'trnL-F spacer Strict' = [&R] (Ruta_graveolens_R25,Ruta_graveolens_R24,((Murraya_kwangsiensis,Clausena_lansium),(Orixa_japonica,(Skimmia_japonica_RBE4,Skimmia_laureola,Skimmia_japonica_subspecies_re,Skimmia_japonica_RBE5,Skimmia_japonica_RBE3,Skimmia_anquetilia),Casimiroa_edulis,((Ptelea_augustifolia,Ptelea_polyadenia),((((((Euodia_hortensis_S85,Euodia_hortensis_S68),Melicope_vitiflora,Pitaviaster_haplophyllus,Euodia_pubifolia_8886),((Acronychia_species_313,Acronychia_pedunculata),Melicope_rubra,Melicope_triphylla,(Melicope_ternata_1759,Melicope_ternata_RBE9))),Dinosperma_melanophloium),Halfordia_kendack,Bosistoa_medicinalis),((((Tetradium_trichotomum_ET2,Tetradium_trichotomum_ET3,Tetradium_trichotomum_ET4,Tetradium_glabrifolium,Tetradium_ruticarpum_TB1,Tetradium_ruticarpum_TB2,Tetradium_ruticarpum_N8,Tetradium_ruticarpum_N3,Tetradium_ruticarpum_N6,Tetradium_ruticarpum_N7,Tetradium_austrosinense),(Tetradium_daniellii_TB3,(Tetradium_daniellii_633,Tetradium_daniellii_AA13))),Phellodendron_amuranse),((Zanthoxylum_simulans_AA20,Zanthoxylum_simulans_AA21,Zanthoxylum_nitidium,(Zanthoxylum_simulans_ZX4,Zanthoxylum_piperitum),Zanthoxylum_armatum),Toddalia_asiatica,Toddalia_species_310,Zanthoxylum_schinifolium,Zanthoxylum_stenophyllum))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2707] END;