#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on November 13, 2026; 5:20 GMT

TreeBASE (cc) 1994-2008

Study reference:
Reeleder R. 2007. Rhexocercosporidium panacis sp. nov., a new anamorphic species
causing rusted root of ginseng (Panax quinquefolius). Mycologia, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1786]

[ The following blocks are input data for analysis step 3578 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep3578;
        DIMENSIONS NTAX=10;
        TAXLABELS
            Euascomycete_OOO15
            Euascomycete_OOO36
            Phialophora_gregata_98G13
            Rhexocercosporidium_carotae_DAOM226960
            Rhexocercosporidium_carotae_PRI784
            Rhexocercosporidium_carotae_PRI787
            Rhexocercosporidium_panacis_DAOM235603
            Rhexocercosporidium_panacis_DAOM235604
            Rhexocercosporidium_panacis_DAOM235605
            Rhexocercosporidium_panacis_RRD3
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1852]

	TITLE ITS_Tub_combined;
	LINK TAXA = TaxaForAnalysisStep3578;
	DIMENSIONS NCHAR=716;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                  10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710      ]
[                                                   .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
Euascomycete_OOO15                         ?CCCGCGGAGCCTTGCTCCCTG--GGGCTACCCTACTTCGGTAAGGTTTAGAGTCGTCGGGCCCTCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCTAATTTTTCAGCCGTGGTAAGGTTTCTATGAAGGAGGTCGAGGATCAAATGCGCAACGTTCAGAACAAGAACTCATCCTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACCGCCCTTTGCTCCATCCCACCACGTGGTCTCAAGATGTCCTCCACCTTTGTCGGTAACTCCACCTCCATCCAAGAGCTCTTCAAGCGTATCGG
Euascomycete_OOO36                         GCCCGCGGAGC-TTGCTCCCTG--GGGCTACCCTACTTCAGTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCTAATTTTTCAGCCGTGGTAAGGTTTCTATGAAGGAGGTCGAGGATCAAATGCGCAACGTCCAGAACAAGAACTCATCCTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACCGCCCTTTGCTCCATCCCACCACGTGGTCTCAAGATGTCCTCCACCTTTGTCGGTAACTCCACCTCCATCCAAGAGCTCTTCAAGCGTATCGG
Phialophora_gregata_98G13                  CCCCACAGGAGCTTGCTCCGTGGCGGGCTGCCC------------G----------TCGAGCC-TCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGCGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTCCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCTGGCAGGTCTACATGCCAGCAACACCCAAATTTCTAGCCGTGGTAAGGTTTCCATGAAAGAGGTTGAGGATCAAATGCGCAATGTCCAGAACAAGAACTCCTCCTACTTCGTCGAGTGGATCCCCAATAACGTCCAAACCGCCCTCTGCTCTATCCCTCCACGTGGTCTTAAGATGTCTTCCACATTCGTTGGTAACTCCACCTCTATCCAGGAGCTCTTCAAGCGTATCGG
Rhexocercosporidium_carotae_DAOM226960     CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGTCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAATTCTCTAGCCGTGGTAAAGTCTCCATGAAGGAGGTCGAGGATCAGATGCGCAATGTCCAGAACAAGAACTCGTCGTACTTCGTTGAGTGGATTCCCAACAACGTCCAAACCGCCCTTTGCTCCATCCCACCACGTGGTCTCAAGATGTCCTCCACCTTCGTCGGTAACTCCACCTCCATCCAGGAGCTCTTCAAGCGTATCGG
Rhexocercosporidium_carotae_PRI784         CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGCCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAATTCTCTAGCCGTGGTAAAGTCTCCATGAAGGAGGTCGAGGATCAGATGCGCAATGTCCAGAACAAGAACTCGTCGTACTTCGTTGAGTGGATTCCCAACAACGTCCAAACCGCCCTTTGCTCCATCCCACCACGTGGTCTCAAGATGTCCTCCACCTTCGTCGGTAACTCCACCTCCATCCAGGAGCTCTTCAAGCGTATCGG
Rhexocercosporidium_carotae_PRI787         CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCACGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGTCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAATTCTCTAGCCGTGGTAAAGTCTCCATGAAGGAGGTCGAGGATCAGATGCGCAATGTCCAGAACAAGAACTCGTCGTACTTCGTTGAGTGGATTCCCAACAACGTCCAAACCGCCCTTTGCTCCATCCCACCACGTGGTCTCAAGATGTCCTCCACCTTCGTCGGTAACTCCACCTCCATCCAGGAGCTCTTCAAGCGTATCGG
Rhexocercosporidium_panacis_DAOM235603     CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAATCTTTTAGCCGTGGTAAGGTCTCCATGAAGGAGGTCGAGGATCAAATGCGCAATGTCCAGAACAAGAACTCCTCGTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACTGCCCTTTGCTCCATTCCACCACGTGGTCTCAAGATGTCCTCTACCTTCGTCGGTAACTCTACCTCCATTCAGGAGCTCTTCAAGCGTATCGG
Rhexocercosporidium_panacis_DAOM235604     CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAATCTTTTAGCCGTGGTAAGGTCTCCATGAAGGAGGTCGAGGATCAAATGCGCAATGTCCAGAACAAGAACTCCTCGTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACTGCCCTTTGCTCCATTCCACCACGTGGTCTCAAGATGTCCTCTACCTTCGTCGGTAACTCTACCTCCATTCAGGAGCTCTTCAAGCGTATCGG
Rhexocercosporidium_panacis_DAOM235605     CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAATCTTTTAGCCGTGGTAAGGTCTCCATGAAGGAGGTCGAGGATCAAATGCGCAATGTCCAGAACAAGAACTCCTCGTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACTGCCCTTTGCTCCATTCCACCACGTGGTCTCAAGATGTCCTCTACCTTCGTCGGTAACTCTACCTCCATTCAGGAGCTCTTCAAGCGTATCGG
Rhexocercosporidium_panacis_RRD3           CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAATCTTTTAGCCGTGGTAAGGTCTCCATGAAGGAGGTCGAGGATCAAATGCGCAATGTCCAGAACAAGAACTCCTCGTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACTGCCCTTTGCTCCATTCCACCACGTGGTCTCAAGATGTCCTCTACCTTCGTCGGTAACTCTACCTCCATTCAGGAGCTCTTCAAGCGTATCGG
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = ITS_Tub_combined) = 
		N: 1-716;
CODONPOSSET  CodonPositions (CHARACTERS = ITS_Tub_combined) = 
		N: 1-716;
END;
[ The following blocks are output data for analysis step 3578 ]
BEGIN TREES;
      TITLE Tb8351;
      LINK TAXA = TaxaForAnalysisStep3578;
      TREE Fig._4 = [&R] (Phialophora_gregata_98G13,((Euascomycete_OOO15,Euascomycete_OOO36),((Rhexocercosporidium_panacis_DAOM235605,Rhexocercosporidium_panacis_RRD3,Rhexocercosporidium_panacis_DAOM235603,Rhexocercosporidium_panacis_DAOM235604),(Rhexocercosporidium_carotae_DAOM226960,Rhexocercosporidium_carotae_PRI787,Rhexocercosporidium_carotae_PRI784))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4810]


END;
BEGIN TREES;
      TITLE Tb8351;
      LINK TAXA = TaxaForAnalysisStep3578;
      TREE ITS_Tub_1 = [&R] (Phialophora_gregata_98G13,((Euascomycete_OOO15,Euascomycete_OOO36),(((Rhexocercosporidium_panacis_DAOM235605,Rhexocercosporidium_panacis_RRD3),(Rhexocercosporidium_panacis_DAOM235603,Rhexocercosporidium_panacis_DAOM235604)),(Rhexocercosporidium_carotae_DAOM226960,(Rhexocercosporidium_carotae_PRI787,Rhexocercosporidium_carotae_PRI784)))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4811]


END;