#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on November 12, 2026; 4:38 GMT

TreeBASE (cc) 1994-2008

Study reference:
Reeleder R. 2007. Rhexocercosporidium panacis sp. nov., a new anamorphic species
causing rusted root of ginseng (Panax quinquefolius). Mycologia, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1786]

[ The following blocks are input data for analysis step 3579 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep3579;
        DIMENSIONS NTAX=12;
        TAXLABELS
            Euascomycete_OOO15
            Euascomycete_OOO36
            Phialophora_gregata_98G13
            Rhexocercosporidium_carotae_DAOM226960
            Rhexocercosporidium_carotae_DAOM229433
            Rhexocercosporidium_carotae_PRI784
            Rhexocercosporidium_carotae_PRI787
            Rhexocercosporidium_panacis_DAOM235603
            Rhexocercosporidium_panacis_DAOM235604
            Rhexocercosporidium_panacis_DAOM235605
            Rhexocercosporidium_panacis_RRD3
            Rhexocercosporidium_sp_DSE481b
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1851]

	TITLE ITS_parsimony;
	LINK TAXA = TaxaForAnalysisStep3579;
	DIMENSIONS NCHAR=515;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                  10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510     ]
[                                                   .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
Euascomycete_OOO15                         ?CCCGCGGAGCCTTGCTCCCTG--GGGCTACCCTACTTCGGTAAGGTTTAGAGTCGTCGGGCCCTCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCTAAT?
Euascomycete_OOO36                         GCCCGCGGAGC-TTGCTCCCTG--GGGCTACCCTACTTCAGTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCTAAT?
Phialophora_gregata_98G13                  CCCCACAGGAGCTTGCTCCGTGGCGGGCTGCCC----------------------GTCGAGCC-TCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGCGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTCCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCTGGCAGGTCTACATGCCAGCAACACCCAAA?
Rhexocercosporidium_carotae_DAOM226960     CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGTCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAAT?
Rhexocercosporidium_carotae_DAOM229433     CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGTCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAAT?
Rhexocercosporidium_carotae_PRI784         CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGCCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAATT
Rhexocercosporidium_carotae_PRI787         CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCACGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGTCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAATT
Rhexocercosporidium_panacis_DAOM235603     CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAAT?
Rhexocercosporidium_panacis_DAOM235604     CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAAT?
Rhexocercosporidium_panacis_DAOM235605     CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAAT?
Rhexocercosporidium_panacis_RRD3           CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAAT?
Rhexocercosporidium_sp_DSE481b             CCCCACAGAAGCTTGCTTCGTGGCGGGCTACCCTACTCCGGTAGGGTTTAGAGTCGTCGAACC-TCTCGGAGAAGTTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTAGTGCCAACGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTCTCTAGTGATGTCTGAGTACTACATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTGGCTTGGTCTTGGGGTTCGCGGTCTCGCGGCTCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGCAAGTCTACTTGCCAGTAACCCCTAAA?
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = ITS_parsimony) = 
		N: 1-515;
CODONPOSSET  CodonPositions (CHARACTERS = ITS_parsimony) = 
		N: 1-515;
END;
[ The following blocks are output data for analysis step 3579 ]
BEGIN TREES;
      TITLE Tb8352;
      LINK TAXA = TaxaForAnalysisStep3579;
      TREE Fig._3 = [&R] (Phialophora_gregata_98G13,(Euascomycete_OOO36,Euascomycete_OOO15),(Rhexocercosporidium_sp_DSE481b,((Rhexocercosporidium_carotae_DAOM226960,Rhexocercosporidium_carotae_DAOM229433,Rhexocercosporidium_carotae_PRI784,Rhexocercosporidium_carotae_PRI787),(Rhexocercosporidium_panacis_DAOM235604,Rhexocercosporidium_panacis_DAOM235603,Rhexocercosporidium_panacis_DAOM235605,Rhexocercosporidium_panacis_RRD3))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4812]


END;
BEGIN TREES;
      TITLE Tb8352;
      LINK TAXA = TaxaForAnalysisStep3579;
      TREE Pars_F_1 = [&R] (Phialophora_gregata_98G13,(Euascomycete_OOO36,Euascomycete_OOO15),(Rhexocercosporidium_sp_DSE481b,(((Rhexocercosporidium_carotae_DAOM226960,(Rhexocercosporidium_carotae_PRI784,Rhexocercosporidium_carotae_PRI787)),Rhexocercosporidium_carotae_DAOM229433),(Rhexocercosporidium_panacis_DAOM235604,(Rhexocercosporidium_panacis_DAOM235603,(Rhexocercosporidium_panacis_DAOM235605,Rhexocercosporidium_panacis_RRD3))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4815]


END;
BEGIN TREES;
      TITLE Tb8352;
      LINK TAXA = TaxaForAnalysisStep3579;
      TREE Pars_F_2 = [&R] (Phialophora_gregata_98G13,((Euascomycete_OOO36,Euascomycete_OOO15),Rhexocercosporidium_sp_DSE481b),((Rhexocercosporidium_carotae_DAOM226960,Rhexocercosporidium_carotae_DAOM229433,Rhexocercosporidium_carotae_PRI784,Rhexocercosporidium_carotae_PRI787),(Rhexocercosporidium_panacis_DAOM235604,Rhexocercosporidium_panacis_DAOM235603,Rhexocercosporidium_panacis_DAOM235605,Rhexocercosporidium_panacis_RRD3)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4814]


END;
BEGIN TREES;
      TITLE Tb8352;
      LINK TAXA = TaxaForAnalysisStep3579;
      TREE Pars_F_3 = [&R] (Phialophora_gregata_98G13,((Euascomycete_OOO36,Euascomycete_OOO15),((Rhexocercosporidium_carotae_DAOM226960,Rhexocercosporidium_carotae_DAOM229433,Rhexocercosporidium_carotae_PRI784,Rhexocercosporidium_carotae_PRI787),(Rhexocercosporidium_panacis_DAOM235604,Rhexocercosporidium_panacis_DAOM235603,Rhexocercosporidium_panacis_DAOM235605,Rhexocercosporidium_panacis_RRD3))),Rhexocercosporidium_sp_DSE481b);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4813]


END;