#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on January 12, 2026; 14:41 GMT TreeBASE (cc) 1994-2008 Study reference: Moon C., Guillaumin J., Ravel C., Li C., Craven K., & Schardl C.L. 2007. New Neotyphodium endophyte species from the grass tribes Stipeae and Meliceae. Mycologia, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1831] [ The following blocks are input data for analysis step 3694 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3694; DIMENSIONS NTAX=49; TAXLABELS Epichloe_amarillans_200743 Epichloe_amarillans_200744 Epichloe_baconii_200745 Epichloe_baconii_76552 Epichloe_brachyelytri_200752 Epichloe_brachyelytri_201561 Epichloe_bromicola_200749 Epichloe_bromicola_201559 Epichloe_clarkii_200742 Epichloe_elymi_200850 Epichloe_elymi_201551 Epichloe_festucae_90661 Epichloe_festucae_E28 Epichloe_glyceriae_200747 Epichloe_glyceriae_200755 Epichloe_sylvatica_200748 Epichloe_typhina_200736 Epichloe_typhina_200738 Epichloe_typhina_200739 Epichloe_typhina_200740 Epichloe_typhina_201666 Epichloe_typhina_201668 Epichloe_typhina_201669 Neotyphodium_aotearoae_MYA_1192 Neotyphodium_chisosum_64037 Neotyphodium_funkii_4098_copy_a Neotyphodium_funkii_4099_copy_a Neotyphodium_funkii_4100_copy_a Neotyphodium_funkii_E4098_copy_b Neotyphodium_funkii_E4099_copy_b Neotyphodium_funkii_E4100_copy_b Neotyphodium_funkii_MYA_2583_copy_a Neotyphodium_funkii_MYA_2583_copy_b Neotyphodium_gansuense_E7080 Neotyphodium_gansuense_E7083 Neotyphodium_gansuense_E7084 Neotyphodium_gansuense_E7088 Neotyphodium_gansuense_E7092 Neotyphodium_gansuense_MYA_3669 Neotyphodium_gansuense_var._inebrians_MYA_1187 Neotyphodium_gansuense_var._inebrians_MYA_1228 Neotyphodium_guerinii_MYA_1235_copy_a Neotyphodium_guerinii_MYA_1235_copy_b Neotyphodium_guerinii_MYA_1236_copy_a Neotyphodium_guerinii_MYA_1236_copy_b Neotyphodium_melicicola_MYA_1188_copy_a Neotyphodium_melicicola_MYA_1188_copy_b Neotyphodium_melicicola_MYA_1190_copy_a Neotyphodium_melicicola_MYA_1190_copy_b ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1949] TITLE actG; LINK TAXA = TaxaForAnalysisStep3694; DIMENSIONS NCHAR=546; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Epichloe_amarillans_200743 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCATTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---TCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTCCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAATATGCACACCGTCATCCTCATCATCAAATACAACAAAA-TTCTGACATTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATACAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAAAAAATTT---GGCCTGGGCCTCGCGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_amarillans_200744 CGCAATCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCATTGCGTAGACCCACGCAACGTGTCGAGCAACAGCAG-ACGAGGCAGAATGCTTCCTGTAGCATCCGTAGATGATG---GACAACA---TCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTCCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAATATGCACACCGTCATCCTCATCATCAAATACAACAAAA-TTCTGACATTTCGCGATAGCCTCTATTGTCGGCCGTCCCCGTCATACAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAAATTT---GGCCTGGGCCTCGCGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_baconii_200745 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAATATGCACACCGTCATCCTCATCATCAAATACAACAAAA-TGCTGACATTTCGCGATAGCCTCCCTTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAAATTT---GGCCTGGGCCTCGCGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_baconii_76552 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CACTTTTACAAAGACGC-ATATCGCTGACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGAC-TGGCAACAAATATGCACATTGTCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAAGAAAACTAGAAAATTT---GACCTGGGCCTCGCGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTGGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_brachyelytri_200752 CGCAACCCCCGCTCCGCTCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAATATGCACACCGTCATCCTCATCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGCCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAAATCT---GGCCTGGGCCTCGCGCCACCCGACAGGCTGCGCTTGCGCCCGAGCTCAGATGTGTTAGGAAATTGAAACACCATTCTGACAATGTTTGGCAG Epichloe_brachyelytri_201561 CGCAACCCCCGCTCCGCTCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAATATGCACACCGTCATCCTCATCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGCCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAAATCT---GGCCTGGGCCTCGCGCCACCCGACAGGCTGCGCTTGCGCCCGAGCTCAGATGTGTTAGGAAATTGAAACACCATTCTGACAATGTTTGGCAG Epichloe_bromicola_200749 CGCAACCCCCGCTC---TCTCTCACCGACCTCCCGAAC---------ACGTAGACCCACGCAGCGTGTCGAACAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GGCAGCA---CCCTCTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGCTTCGCAGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTC---------AGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAACATGCACACCATCATCCTCATCATTAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGTCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGAT-GGCTAGGA----ACCAAAAAATTT---GGCCTGGGCCTCGCGCCGCCTGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTGGGAAATTCAAACATCATTCTGACAATGTTTGGCAG Epichloe_bromicola_201559 CGCAACCCCCGCTC---TCTCTCACCGACCTCCCGAAC---------ACGTAGACCCACGCAGCGTGTCGAACAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GGCAGCA---CCCTCTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGCTTCGCAGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTC---------AGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAACATGCACACCATCATCCTCATCATTAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGTCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGGA----ACCAAAAAATTT---GGCCTGGGCCTCGCGCCGCCTGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTGGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_clarkii_200742 CGCAACCCCCGCTCGGCTCTCTCACCGACCTCTCGAATTTGGGCACTGCGTAGACCCACGCAACGTATCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---AACAACA---CTCTTTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCTGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC-TCCTCTCAGCTCCCCCCCGAAAGACTACGTGTAGCTCTTAGAGTGAGAGGTCTGGC-TGGCAACAAACATGCACACCGTCATCCTCATCATCTAATACAACAAAAATGCTGACATTTCGCTATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AAATATTTTTTT----GGCCTGGGCCTCGTGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTCGGGGAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_elymi_200850 CGCAAACCCCGCTC---TCTCTCACCGACCTCTCGAAC---------ACGTAGACCCACGCAACGTGTCGAACAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GGAAGCA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGTCTACGCGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAACATGCACACCGTCATCCTCATCATCAAATACAACAAAAATGCTGACACTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAGATTT---GGCCTGGGCCTCGCGCCGCCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_elymi_201551 CGCAAACCCCGCTC---TCTCTCACCGACCTCTCGAAC---------ACGTAGACCCACGCAACGTGTCGAACAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GGAAGCA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGTCTACGCGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAACATGCACACCGTCATCCTCATCATCAAATACAACAAAAATGCTGACACTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAGATTT---GGCCTGGGCCTCGCGCCGCCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_festucae_90661 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGCTGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAATATGCACACCGTCATCCTTATCATTAAATATAACAAAAATGCTGACATTTCGCGATAGCCTCCATCGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGGA---AACTAGAAAAGTT---GGCCTGGGCCTCGCGCCACCTGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_festucae_E28 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGCTGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAATATGCACACCGTCATCGTTATCATTAAATATAACAAAAATGCTGACATTTCGCGATAGCCTCCATCGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGGA---AACTAGAAAAGTT---GGCCTGGGCCTCGCGCCACCTGACTGGCTGCGCTTGCGCGCGAGCTCAGATATGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_glyceriae_200747 CGCAACCCCCGCTC---TCTC--ACCGACCTCTCGAACATGGGCACTGCGAAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAAACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAATATGCATACCGTCATC---ATCATCAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAAATTT---GGCCTGGGCCTCGCGCCACCCGACTGGCTGCGCT-GCGCGCGAGCTCAGATGTGTTGGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_glyceriae_200755 CGCAACCCCCGCTC---TCTC--ACCGACCTCTCGAACATGGGCACTGCGAAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAAACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAATATGCATACCGTCATC---ATCATCAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAAATTT---GGCCTGGGCCTCGCGCCACCCGACTGGCTGCGCT-GCGCGCGAGCTCAGATGTGTTGGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_sylvatica_200748 CGCAACCCCCGCTCGGCTCTCTCACCGACCTCTCGAATTTGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTCCTCCCCTCAGCTCCCCCC-GAAAGACTACGTGTAGCTCTCAGAGTGAGAGGACTGGC-TGGCAACAAATATGCACACCGTCATCCTCATCATC-AATACAACAAAAATGCTGACATTTCGCTATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AAATATTTTTTT----GGCCTGGGCCTCGTGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGT{CT}GGGGAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_typhina_200736 CGCAACCCCCGCTCGGCTCTCTCACCGACCTCTCGAATTTGGGCACTGCGTAGACCCACGCAACGTATCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---AACAACA---CTCTTTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCTGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC-TCCTCTCAACTCCCCCC-GAAAGACTACGTGTAGCTCTTAGAGTGAGAGGTCTGGC-TGGCAACAAACATGCACACCGTCATCCTCATCATCTAATACAACAAAAATGCTGACATTTCGCTATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AAATGTTTTTTT----GGCCTGGGCCTCGTGCCACCCGACTGGCTGCGCT-GCGCGCGAGCTCAGATGTGTCGGGGAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_typhina_200738 CGCAACCCCCGCTCGGCTCTCTCACCGACCTCTCGAATTTGGGCACTGCATAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---AACAACA---CTCTTTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCTGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC-TCCTCTCAGCTTCCCCC-GAAAGACTACGTGTAGCTCTTAGAGTGAGAGGACTGGC-TGGCAACAAACATGCACACCGTCATCCTCATCATCTAATACAACAAAAATGCTGACATTTCGCTATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTA-GTCTTTCCG-CGCGATTGGCTAGAA---AAATAATTTTTC----GGCCTGGGCCTCGTGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTGGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_typhina_200739 CGCAACCCCCGCTCGGCTCTCTCACCGACCTCTCGAATTTGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GCAAACA---CCCATTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTCCTCCTCTCAGCTCCCCCC-GAAAGACTACGTGTAGCTCTTAGAGTGAGAGGACTGGC-TGGCAACAAATATGCACACCGTCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCTATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCGCCGCGATTGGCTAGAA---AAATAAAAATTTT---GGCCTGGGCCTCGTGCCACCCGACTGGCTACGCTTGCGCGCGAGCTCAGATGTGTTGGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_typhina_200740 CGCAACCCCCGCTCGGCTCTCTCACCGACCTCTCGAATTTGGGCACTGCATAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---AACAACA---CTCTTTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCTGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTCCTCCTCTCAGCTCCCCCC-GAAAGACTACGTGTAGCTCTTAGAGTGAGAGGACTGGC-TGGCAACAAACATGCACACCGTCATCCTCATCATCTAATACAACAAAAATGCTGACATTTCGCTATAGCCTCCATTGTCGGCCGCCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AAATAATTTTTC----GGCCTGGGCCTCGTGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTCGGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_typhina_201666 CGCAACCCCCGCTCGGCTCTCTCACCGACCTCTCGAATTTGGGCACTGCGTAGACCCACGCAACGTATCGAGCAACAACAGGACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---AACGACA---CTCTTTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCTGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC-TCCTCTCAGCTCCCCCC-GAAAGACTACGTGTAGCTCGTAGAGTGAGAGGACTGGCCTGGCAACAAACATGCACACTGTCATCCTCATCATCTAATACAACAAAAATGCTGACATTTCGCTATAGCCTCCATTGTCGGCCGTCCACGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AAGTATTTTTTTTTTTGGCCTGGGCCTCGTGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTCAGGAAATTCAAACACCATTCTGACAATGTTTTGCAG Epichloe_typhina_201668 CGCATCCCCCGCTCGGCTCTCTCACCGACCTCTCGAATTTGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTCCTCCTCTCAGCTCCCCCC-GAAAGACTACGTGTAGCTCTTAGAGTGAGAGGACTGGC-TGGCAACAAATATGCACACCGTCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCTATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCGCCGCGATTGGCTAGAA---AAATAACATTTTT---GGCCTGGGCCTCGTGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Epichloe_typhina_201669 CGCAACCCCCGCTCGGCTCTCTCACCGACCTCTCGAATTTGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATTTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCC-ACTTCCTTCCTCCTCTCAGCTCCCCCC-GAAAGACTACGTGTAGCTCTTAGAGTGAGAG-ACTGGC-TG-CAACAAATATGCACACCGTCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCTATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTA-GTATTTCCGTCGCGATTGGCTAGAA----AATAATATTTTT---GGCCTGGGCCTCGTGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Neotyphodium_aotearoae_MYA_1192 CGCAACCCCCGCTCCGCTCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATGGACAACAACA---CCCCTTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTTCGTGAGTAACCCCACTTCCTTCCTCCTCTCAGCTCCCCCC-GAAAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAACAAATATGCACAACGTCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCATTCCG-CGCGATTGGCTGGAA---AAATAAAAAATTT---GGCCTGGGCCTCGCGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Neotyphodium_chisosum_64037 CGCAACCCCCGCTC---TCTCTCACCGACCTCCCGAAC---------ACGTAGACCCACGCAGCGTGTCGAACAACAACAG-ACGAGGCAGAATATTTCCTGTAGCATCTGTAGATAATG---GGCAGCA---CCCTCTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGCTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGTCAA---ACATGCACACCATCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGTCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAAATTT---GGCCTGGGCCTCGCGCCGCCCGACTGGCTGCGTTTGCGCGCGAGCTCAGATGTGTTGGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Neotyphodium_funkii_4098_copy_a -GCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGCTGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAA---ATATGCACACCGTCATCGTTATCATTAAATATAACAAAAATGCTGACATTTCGCGATAGCCTCCATCGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGGA---AACTAGAAAA-------------------------------------------------------------------------------------------------- Neotyphodium_funkii_4099_copy_a -------------------TCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGCTGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAA---ATATGCACACCGTCATCGTTATCATTAAATATAACAAAAATGCTGACATTTCGCGATAGCCTCCATCGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGGA---AACTAGAAAA-------------------------------------------------------------------------------------------------- Neotyphodium_funkii_4100_copy_a CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGCTGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAA---ATATGCACACCGTCATCGTTATCATTAAATATAACAAAAATGCTGACATTTCGCGATAGCCTCCATCGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGGA---AACTAGAAAA-------------------------------------------------------------------------------------------------- Neotyphodium_funkii_E4098_copy_b CGCAAACCCCGCTC---TCTCTCACCGACCTCTCGAAC---------ACGTAGACCCACGCAACGTGTCGAACAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GGAAGCA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGTCTACGCGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAA---ACATGCACACCGTCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAGA-------------------------------------------------------------------------------------------------- Neotyphodium_funkii_E4099_copy_b CGCAAACCCCGCTC---TCTCTCACCGACCTCTCGAAC---------ACGTAGACCCACGCAACGTGTCGAACAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GGAAGCA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGTCTACGCGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAA---ACATGCACACCGTCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAGA-------------------------------------------------------------------------------------------------- Neotyphodium_funkii_E4100_copy_b CGCAAACCCCGCTC---TCTCTCACCGACCTCTCGAAC---------ACGTAGACCCACGCAACGTGTCGAACAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GGAAGCA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGTCTACGCGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAA---ACATGCACACCGTCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAGA-------------------------------------------------------------------------------------------------- Neotyphodium_funkii_MYA_2583_copy_a -GCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGCTGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAA---ATATGCACACCGTCATCGTTATCATTAAATATAACAAAAATGCTGACATTTCGCGATAGCCTCCATCGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGGA---AACTAGAAAA-------------------------------------------------------------------------------------------------- Neotyphodium_funkii_MYA_2583_copy_b CGCAAACCCCGCTC---TCTCTCACCGACCTCTCGAAC---------ACGTAGACCCACGCAACGTGTCGAACAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GGAAGCA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGTCTACGCGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAA---ACATGCACACCGTCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AACTAGAAGA-------------------------------------------------------------------------------------------------- Neotyphodium_gansuense_E7080 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGGATGCTCCCTGTAGTATCTGTAGATGGTG---GACAACA---CCCTTTTACAAAGACGCCATATCACTAACTCGATGGTAGTTCGGGTATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCTCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTAA--GTGTGAGGATTGGC-TCACAA---ATATGCACACCGTCATCCTCCTCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTCCCCG-CTCAAT-GACTAGAA---AACTAGAACATTT---GGCCTGGGCCTCGCCCCACCCGACTGGCTCC-CTCGCGCGCGAGCGCAG-----------------AACACGATTCTGACAATGTTTGGCAG Neotyphodium_gansuense_E7083 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGGATGCTCCCTGTAGTATCTGTAGATGGTG---GACAACA---CCCTTTTACAAAGACGCCATATCACTAACTCGATGGTAGTTCGGGTATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCTCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTAA--GTGTGAGGATTGGC-TCACAA---ATATGCACACCGTCATCCTCCTCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTCCCCG-CTCAAT-GACTAGAA---AACTAGAACATTT---GGCCTGGGCCTCGCCCCACCCGACTGGCTCC-CTCGCGCGCGAGCGCAG-----------------AACACGATTCTGACAATGTTTGGCAG Neotyphodium_gansuense_E7084 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGGATGCTCCCTGTAGTATCTGTAGATGGTG---GACAACA---CCCTTTTACAAAGACGCCATATCACTAACTCGATGGTAGTTCGGGTATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCTCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTAA--GTGTGAGGATTGGC-TCACAA---ATATGCACACCGTCATCCTCCTCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTCCCCG-CTCAAT-GACTAGAA---AACTAGAACATTT---GGCCTGGGCCTCGCCCCACCCGACTGGCTCC-CTCGCGCGCGAGCGCAG-----------------AACACGATTCTGACAATGTTTGGCAG Neotyphodium_gansuense_E7088 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGGATGCTCCCTGTAGTATCTGTAGATGGTG---GACAACA---CCCTTTTACAAAGACGCCATATCACTAACTCGATGGTAGTTCGGGTATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCTCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTAA--GTGTGAGGATTGGC-TCACAA---ATATGCACACCGTCATCCTCCTCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTCCCCG-CTCAAT-GACTAGAA---AACTAGAACATTT---GGCCTGGGCCTCGCCCCACCCGACTGGCTCC-CTCGCGCGCGAGCGCAG-----------------AACACGATTCTGACAATGTTTGGCAG Neotyphodium_gansuense_E7092 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGGATGCTCCCTGTAGTATCTGTAGATGGTG---GACAACA---CCCTTTTACAAAGACGCCATATCACTAACTCGATGGTAGTTCGGGTATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCTCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTAA--GTGTGAGGATTGGC-TCACAA---ATATGCACACCGTCATCCTCCTCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTCCCCG-CTCAAT-GACTAGAA---AACTAGAACATTT---GGCCTGGGCCTCGCCCCACCCGACTGGCTCC-CTCGCGCGCGAGCGCAG-----------------AACACGATTCTGACAATGTTTGGCAG Neotyphodium_gansuense_MYA_3669 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGGATGCTCCCTGTAGTATCTGTAGATGGTG---GACAACA---CCCTTTTACAAAGACGCCATATCACTAACTCGATGGTAGTTCGGGTATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCTCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTAA--GTGTGAGGATTGGC-TCACAA---ATATGCACACCGTCATCCTCCTCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTCCCCG-CTCAAT-GACTAGAA---AACTAGAACATTT---GGCCTGGGCCTCGCCCCACCCGACTGGCTCC-CTCGCGCGCGAGCGCAG-----------------AACACGATTCTGACAATGTTTGGCAG Neotyphodium_gansuense_var._inebrians_MYA_1187 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGGATGCTTCCTGTAGCATCTGTAGATGGTG---GAAAACA---CACTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGTATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCTCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCCCGATAGACTACGTGTAGCTCTAA--GTGAGAGGATTGGC-TCGCAA--AATATGCACACCGTCATATTCCTCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTCTCCG-CGCAAT-GACTAGAA---AACTAGAACATTT---GGCCTGGGCCTTGCCCCACCCGACTGGCTCC-CTCGCGCGCGAGCTCAG-----------------AACACGATTCTGACAATGTTTGGCAG Neotyphodium_gansuense_var._inebrians_MYA_1228 CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGGATGCTTCCTGTAGCATCTGTAGATGGTG---GAAAACA---CACTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGTATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCTCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCCCGATAGACTACGTGTAGCTCTAA--GTGAGAGGATTGGC-TCGCAA--AATATGCACACCGTCATATTCCTCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTCTCCG-CGCAAT-GACTAGAA---AACTAGAACATTT---GGCCTGGGCCTTGCCCCACCCGACTGGCTCC-CTCGCGCGCGAGCTCAG-----------------AACACGATTCTGACAATGTTTGGCAG Neotyphodium_guerinii_MYA_1235_copy_a CGCAACCCCCGCTCGGCTCTCTCACCGACCTCTCGAATTTGGGCACTGCGTAGACCCACGCAACGTATCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---AACAACA---CTCTTTTATAAAGACGT-ATATCACTAACTCGATGGCAGTTCGGGCATGTGCAAGGCTGGTTTCGCTGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC-TCCTCTCAGCTCCCCCC-AAAAGACTACGTGTAGCTCTTAGAGTGAGAGGACTGGC----TGGCAAACATGCACACTGTTATCCTCATCATCTAATACAACAAAAATGCTGACATTTCGCTATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AAATATTTTTTT----GGCCTGGGCCTCGTGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAAATGTGTCAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Neotyphodium_guerinii_MYA_1235_copy_b CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGGATGCTTCCTGTAGCATCTGTAGATGGTG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGTATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCTCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTAA--GTGAGAGGATCGGC-TCGCAA---ATATGCACACTGTCATCCTCCTCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCATGGGTAAGTCTCTCCG-CGCAAT-GACTAGAA---AACTAGAACATTT---GGCCTGGGCCTCGCCCCACCCGACTGGCTCC-CTCGCGCGCGAGCGCAG-----------------AACACGATTCTGACAATGTTTGGCAG Neotyphodium_guerinii_MYA_1236_copy_a CGCAACCCCCGCTCGGCTCTCTCACCGACCTCTCGAATTTGGGCACTGCGTAGACCCACGCAACGTATCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---AACAACA---CTCTTTTATAAAGACGT-ATATCACTAACTCGATGGCAGTTCGGGCATGTGCAAGGCTGGTTTCGCTGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC-TCCTCTCAGCTCCCCCC-AAAAGACTACGTGTAGCTCTTAGAGTGAGAGGACTGGC----TGGCAAACATGCACACTGTTATCCTCATCATCTAATACAACAAAAATGCTGACATTTCGCTATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGAA---AAATATTTTTTT----GGCCTGGGCCTCGTGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAAATGTGTCAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Neotyphodium_guerinii_MYA_1236_copy_b CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGGATGCTTCCTGTAGCATCTGTAGATGGTG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGATGGTAGTTCGGGTATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCTCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTAA--GTGAGAGGATCGGC-TCGCAA---ATATGCACACTGTCATCCTCCTCATCAAATACAACAAAAATGCTGACATGTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCATGGGTAAGTCTCTCCG-CGCAAT-GACTAGAA---AACTAGAACATTT---GGCCTGGGCCTCGCCCCACCCGACTGGCTCC-CTCGCGCGCGAGCGCAG-----------------AACACGATTCTGACAATGTTTGGCAG Neotyphodium_melicicola_MYA_1188_copy_a CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGCTGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAA---ATATGCACACCGTCATCCTTATCATTAAATATAACAAAAATGCTGACATTTCGCGATAGCCTCCATCGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGGA---AACTAGAAAAGTT---GGCCTGGGCCTCGCGCCACCTGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Neotyphodium_melicicola_MYA_1188_copy_b CGCAACCCCCGCTCCGCTCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACAACACCCTTTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTTCGTGAGTAACCCCACTTCCTTCCTCCTCTCAGCTCCCCCC-GAAAGACTACGTGTAGCTCTTG--ATGAGAGGACTGGC-TGGCAA---ATATGCACAACGTCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTGGAA---AAATAAAAAATTT---GGCCTGGGCCTCGCGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Neotyphodium_melicicola_MYA_1190_copy_a CGCAACCCCCGCTC---TCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACA---CCCTTTTACAAAGACGC-ATATCACTAACTCGCTGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTCCGTGAGTAACCCCACTTCCTTC---CTCTCAGCTCCCCCC-GATAGACTACGTGTAGCTCTTA--GTGAGAGGACTGGC-TGGCAA---ATATGCACACCGTCATCCTTATCATTAAATATAACAAAAATGCTGACATTTCGCGATAGCCTCCATCGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTAGGA---AACTAGAAAAGTT---GGCCTGGGCCTCGCGCCACCTGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG Neotyphodium_melicicola_MYA_1190_copy_b CGCAACCCCCGCTCCGCTCTCTCACCGACCTCTCGAACATGGGCACTGCGTAGACCCACGCAACGTGTCGAGCAACAACAG-ACGAGGCAGAATGCTTCCTGTAGCATCTGTAGATGATG---GACAACAACACCCTTTTATAAAGACGT-ATATCACTAACTCGATGGTAGTTCGGGCATGTGCAAGGCTGGTTTCGCCGGAGATGACGCTCCCCGAGCTGTTTTTCGTGAGTAACCCCACTTCCTTCCTCCTCTCAGCTCCCCCC-GAAAGACTACGTGTAGCTCTTG--ATGAGAGGACTGGC-TGGCAA---ATATGCACAACGTCATCCTCATCATCAAATACAACAAAAATGCTGACATTTCGCGATAGCCTCCATTGTCGGCCGTCCCCGTCATCAAGGGTAAGTCTTTCCG-CGCGATTGGCTGGAA---AAATAAAAAATTT---GGCCTGGGCCTCGCGCCACCCGACTGGCTGCGCTTGCGCGCGAGCTCAGATGTGTTAGGAAATTCAAACACCATTCTGACAATGTTTGGCAG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = actG) = N: 1-546; CODONPOSSET CodonPositions (CHARACTERS = actG) = N: 1-546; END; [ The following blocks are output data for analysis step 3694 ] BEGIN TREES; TITLE Tb8467; LINK TAXA = TaxaForAnalysisStep3694; TREE Fig._8 = [&R] ((((Epichloe_brachyelytri_200752,Epichloe_brachyelytri_201561),(((Neotyphodium_guerinii_MYA_1236_copy_b,Neotyphodium_guerinii_MYA_1235_copy_b),(Neotyphodium_gansuense_E7080,Neotyphodium_gansuense_E7083,Neotyphodium_gansuense_E7084,Neotyphodium_gansuense_MYA_3669,Neotyphodium_gansuense_E7088,Neotyphodium_gansuense_E7092)),(Neotyphodium_gansuense_var._inebrians_MYA_1187,Neotyphodium_gansuense_var._inebrians_MYA_1228))),(Epichloe_amarillans_200743,Epichloe_amarillans_200744),(Epichloe_glyceriae_200747,Epichloe_glyceriae_200755),Epichloe_baconii_76552,Epichloe_baconii_200745,(((Epichloe_bromicola_200749,Epichloe_bromicola_201559),Neotyphodium_chisosum_64037),(Neotyphodium_funkii_MYA_2583_copy_b,Neotyphodium_funkii_E4098_copy_b,Neotyphodium_funkii_E4099_copy_b,Neotyphodium_funkii_E4100_copy_b,(Epichloe_elymi_200850,Epichloe_elymi_201551))),((Epichloe_festucae_E28,Neotyphodium_funkii_MYA_2583_copy_a,Neotyphodium_funkii_4098_copy_a,Neotyphodium_funkii_4099_copy_a,Neotyphodium_funkii_4100_copy_a),Epichloe_festucae_90661,Neotyphodium_melicicola_MYA_1188_copy_a,Neotyphodium_melicicola_MYA_1190_copy_a)),(((((((Epichloe_clarkii_200742,Epichloe_typhina_200736),(Epichloe_typhina_201666,(Neotyphodium_guerinii_MYA_1236_copy_a,Neotyphodium_guerinii_MYA_1235_copy_a))),(Epichloe_typhina_200738,Epichloe_typhina_200740)),Epichloe_sylvatica_200748),Epichloe_typhina_201668,Epichloe_typhina_201669),Epichloe_typhina_200739),(Neotyphodium_aotearoae_MYA_1192,(Neotyphodium_melicicola_MYA_1188_copy_b,Neotyphodium_melicicola_MYA_1190_copy_b)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4866] END;