#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on January 12, 2026; 14:41 GMT TreeBASE (cc) 1994-2008 Study reference: Moon C., Guillaumin J., Ravel C., Li C., Craven K., & Schardl C.L. 2007. New Neotyphodium endophyte species from the grass tribes Stipeae and Meliceae. Mycologia, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1831] [ The following blocks are input data for analysis step 3695 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3695; DIMENSIONS NTAX=73; TAXLABELS Epichloe_amarillans_200743 Epichloe_amarillans_200744 Epichloe_baconii_200745 Epichloe_baconii_76552 Epichloe_baconii_90167 Epichloe_brachyelytri_200752 Epichloe_brachyelytri_201561 Epichloe_bromicola_200749 Epichloe_bromicola_200750 Epichloe_bromicola_201558 Epichloe_clarkii_200742 Epichloe_elymi_200850 Epichloe_elymi_201551 Epichloe_festucae_434 Epichloe_festucae_90661 Epichloe_glyceriae_200747 Epichloe_glyceriae_200755 Epichloe_sp._E9924 Epichloe_sylvatica_200748 Epichloe_sylvatica_200751 Epichloe_typina_200736 Epichloe_typina_200738 Epichloe_typina_200739 Epichloe_typina_200740 Epichloe_typina_201666 Epichloe_typina_201667 Epichloe_typina_201669 Epichloe_typina_E1158 Epichloe_typina_E5303 Neotyphodium_aotearoae_MYA_1192 Neotyphodium_chisosum_64037_copy_a Neotyphodium_chisosum_64037_copy_b Neotyphodium_chisosum_64037_copy_c Neotyphodium_coenophialum_90664_copy_a Neotyphodium_coenophialum_90664_copy_b Neotyphodium_coenophialum_90664_copy_c Neotyphodium_funkii_copy_a Neotyphodium_funkii_copy_b Neotyphodium_gansuense_E7080 Neotyphodium_gansuense_E7082 Neotyphodium_gansuense_E7083 Neotyphodium_gansuense_E7084 Neotyphodium_gansuense_E7086 Neotyphodium_gansuense_E7087 Neotyphodium_gansuense_E7088 Neotyphodium_gansuense_E7090 Neotyphodium_gansuense_E7092 Neotyphodium_gansuense_MYA_3669 Neotyphodium_gansuense_var._inebrians_MYA_1187 Neotyphodium_gansuense_var._inebrians_MYA_1228 Neotyphodium_guerinii_A28_copy_a Neotyphodium_guerinii_A28_copy_b Neotyphodium_guerinii_CBS112035_copy_a Neotyphodium_guerinii_CBS112035_copy_b Neotyphodium_guerinii_CBS112036_copy_a Neotyphodium_guerinii_CBS112036_copy_b Neotyphodium_guerinii_CBS113029_copy_a Neotyphodium_guerinii_CBS113029_copy_b Neotyphodium_guerinii_MYA_1235_copy_a Neotyphodium_guerinii_MYA_1235_copy_b Neotyphodium_guerinii_MYA_1236_copy_a Neotyphodium_guerinii_MYA_1236_copy_b Neotyphodium_melicicola_MYA_1188_copy_a Neotyphodium_melicicola_MYA_1188_copy_b Neotyphodium_melicicola_MYA_1190_copy_a Neotyphodium_melicicola_MYA_1190_copy_b Neotyphodium_occultans_Lrr1_copy_a Neotyphodium_occultans_Lrr1_copy_b Neotyphodium_sp._DQ675589 Neotyphodium_tembladerae_MYA_2564_copy_a Neotyphodium_tembladerae_MYA_2564_copy_b Neotyphodium_tembladerae_Ms803_copy_a Neotyphodium_tembladerae_Ms803_copy_b ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1950] TITLE tubB; LINK TAXA = TaxaForAnalysisStep3695; DIMENSIONS NCHAR=579; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Epichloe_amarillans_200743 GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAACGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAACA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAGAGAACG---------AGAGAAAAAG-TGTCATC--ATGCTCATCCATGTGACAG Epichloe_amarillans_200744 GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAACGAATGCGGTA-TTCGAGAACTG-TAGCTGACCGTTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAGAGAACG---------AGAGAAAAAG-TGTCATC--ATGCTCATCCATGTGACAG Epichloe_baconii_200745 GTAAGTTCAAGCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCAAAC----GAC-GGGCACAAACA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGAGACGGGAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG Epichloe_baconii_76552 GTAAGTTCAAACTCCCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCACCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-GCCGACCTCGAAC----GAC-AGGCACAAACA--GCATG-AAAAACTCACATTCTTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCGTTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAAAGAACG---------AAAGAAAAAG-TGCTATC--ATGCTCATCCATGTGACAG Epichloe_baconii_90167 GTAAGTTCAAACTCCCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCTCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-GCCGACCTCGAAC----GAC-AGGCACAAACA--GCATG-AAAAACTCACATTCTTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCGTTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAAAGAACG---------AAAGAAAAAG-TGCTATC--ATGCTCATCCATGTGACAG Epichloe_brachyelytri_200752 GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGAACCCC-----GCCGAGTGCGGCCACGACG-TGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTCATGAATGCGGTA-TTCGAGAACTG-TAGCTGACC----TTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGGAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGAAGG---------AAAGAAAAAG-TGTCATC--ATGCTAATCTATGTGACAG Epichloe_brachyelytri_201561 GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGAACCCC-----GCCGAGTGCGGCCACGACG-TGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTCATGAATGCGGTA-TTCGAGAACTG-TAGCTGACC----TTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGGAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CACACCGCCCTGGAGATGAGACGGAAAGAGAAGG---------AAAGAAAAAG-TGTCATC--ATGCTAATCTATGTGACAG Epichloe_bromicola_200749 GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAATGAAC-AGTCGTGATGAGAGGCGGACCGAGAC--AAAAAAAATAATGATTGCGGTA-TTCGAGAACTG-TAGCTGACC----TTTTCC------TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATAACACATG-GAAAACTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTG----CATACCGCCCTGGAGATGAGACGGAAAGAGAACG-----------ATAAAAAG-TGTTAAC--ATGCTAATCTATGTGACAG Epichloe_bromicola_200750 ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAATGAAC-AGTCGTGATGAGAGGCGGACCGAGACAAAAAAAAAATGATGATTGCGGTA-TTCGAGAACTG-TAGCTGACC----TTTTCC------TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTTGAAC----GAC-AGGCACAAACAACACATG-AAAAACTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTTGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGAACG-----------ATAAAAAG-TGTTAAC--ATGCTAATCTATGTGACAG Epichloe_bromicola_201558 GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAATGAAC-AGTCGTGATGAGAGGCGGACCGAGACAAAAAAAAAATGATGATTGCGGTA-TTCGAGAACTG-TAGCTGACC----TTTTCC------TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAACAACACATG-GAAAACTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGCAGATGAGACGGAAAGAGAACG-----------ATAAAAAG-TGTTAAC--ATGCTCATCTATGTGACAG Epichloe_clarkii_200742 GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCTCCCTCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC---TTTTTTC------TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTACAAAAGTCTCCATTGAGCTA----CATACTGCCCTGGAGATGGGGCGGGAGAAGATGG---------AAAGGAAAAG-TGTTATC--ATGCTAATCTATGTGACAG Epichloe_elymi_200850 GTAAGTTTAACCGCTCTGTTTGTCTTGGGGACACCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAATGGACAAGTCGTGATGAGAGGCGGACCGAGAC---AAAAAATTAATGATTGCGGTA-TTCGAGAACTGTTAGCTGACC----TTTTTC------TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTAGAAC----GAC-GGGCACAAATA--ACATG-AAAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGAACG---------AAAGAAAAAG-TGTCATCATATGCTAATCTATGTGACAG Epichloe_elymi_201551 GTAAGTTTAACCGCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACGTTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC---AAAAAATTAATGATTGCGGTA-TTCGAGAACTGTTAGCTGACC----TTTTTC------TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTAGAAC----GAC-GGGCACAAATA--ACATG-AAAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGAACG---------AAAGAAAAAG-TGTCATCATATGCTAATCTATGTGACAG Epichloe_festucae_434 GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGAAG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGGGACGGAAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG Epichloe_festucae_90661 GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGAAG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGGGACGGAAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG Epichloe_glyceriae_200747 GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT----CGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAAAGATTGCGGTA-TTCGAGAACTG-TAGCTGACCTTTTTCTTCCTCTCTTCTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAGC----GAC-AGGCACCAATA--ACATG-AAAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----TATACCGCCCTGGAGATGAGACGGAAAGAGAACG---------AAAGAAAAAG-TGTCATA--ATGCTAATCTATGTGACAG Epichloe_glyceriae_200755 GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT----CGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAAAGATTGCGGTA-TTCGAGAACTG-TAGCTGACCTTTTTCTTCCCCTCTTCTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAGC----GAC-AGGCACCAATA--ACATG-AAAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----TATACCGCCCTGGAGATGAGACGGAAAGAGAACG---------AAAGAAAAAG-TGTCATA--ATGCTAATCTATGTGACAG Epichloe_sp._E9924 ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAGC-CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATCAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCTTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAAAA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG Epichloe_sylvatica_200748 GTGAGTTCATTCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGAC-AGTAGTGATGAGAGGCGGACCGAGAC-----AACATTAATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC----TTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCGGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGAAAAAGAAGG---------AAAGAAAAAG-TGTTATC--ATGCTAATCTATGTGACAG Epichloe_sylvatica_200751 GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCATGATGAGAGGCGGACCGAGAC-----AACATTAATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC----TTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGAAAAAGAAGG---------AAAGAAAAAG-TGTTATC--ATGCTAATCTATGTGACAG Epichloe_typina_200736 GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCCGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC---TTTTTTC------TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTACAAAAGTCTCCATTGAGCTA----CATACTGCCCTGGAGATGGGGCGGGAGAAGATGG---------AAAGGAAAAG-TGTTATC--ATGCTAATCTATGTGACAG Epichloe_typina_200738 GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAACGCGGTA-TTCGAAAACCG-TAGCTGA-C---TTTTTTA------TTTCCCTCTAGGTTCATCTTCAAACCGGCCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GACAAGGCACAGATA--ACATG-AAAAACTCACATTGACTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGGAAAAGAAGC---------GAAGAAAAAG-TATTATC--ATGCTAATCTATGTGACAG Epichloe_typina_200739 GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCATGATGAGAGGCGGACCGAGAC-----AACATTAATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC----TTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGAAAAAGAGGG---------AAAGAAAAAG-TGTTATC--ATGCTAATCTATGTGACAG Epichloe_typina_200740 GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC---TTTTTTC------TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATGAAAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCTATTGAGCTA----CATACCGCCCCGGAGATGGGACGGGAAAAGAAGC---------AAATAAAACG-TGTTATC--ATGCTAATCTATGTGACAG Epichloe_typina_201666 GTGAGTCCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCCGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGGCCGAGAC-----AACATTGATGAATGCTGTA-TTCGAAAACCG-TAGCTGACC-TTTTTTTTC------TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCCCCATTGAGCTA----CATACCGCCCTGGAGATTGGACAGGAAAAGATGG---------AAAGAAAAAG-TGCCATC--ATGCTAATCTATGTGACAG Epichloe_typina_201667 GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA-TTCGAGAACTG-TAGCTGACC----TTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCTGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG-------------------CAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGAAAAAGAAGG---------AAAGAAAAAG-TGTTATC--ATGCTAATCTATGTGACAG Epichloe_typina_201669 GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGATGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA-TTCGAGAACTG-TAGCTGACC----TTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG-------------------CAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGAAGG---------AAAGAAAAAG-TGTTATC--ATGCTAATCTATGTGACAG Epichloe_typina_E1158 ?????TTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCCGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC---TTTTTTC------TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATGAAAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCAAAATCTAAAAAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGGAAAAGAAGC---------GAAGAAAAAG-TATTATC--ATGCTAATCTATGTGACAG Epichloe_typina_E5303 GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGAC-AGTAGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA-TTCGAGAACTG-TAGCTGACC----TTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCTGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGACTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGGAGG---------AAAGAAAAAG-TGTTATC--ATGCTAATCTGTGTGACAG Neotyphodium_aotearoae_MYA_1192 ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGACCACGACG-TGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGACACAAATA--ACATG-AAAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGAAGG---------AAAGAAAAAG-TGCCATC--ATGCTAATCTATGTGACAG Neotyphodium_chisosum_64037_copy_a ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATTAACGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGACAGAC-AGGCACAAACA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAGAGAACG---------AGAGAAAAAG-TGTCATC--ATGCTCATCCATGTGACAG Neotyphodium_chisosum_64037_copy_b ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA-TTCGAG-ACTG-TAGCTGACC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG-------------------CAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGAAGG---------AAAGAAAAAG-TGTTATC--ATGCTAATCTATGTGACAG Neotyphodium_chisosum_64037_copy_c ???????????TTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-AAAAAAAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGACA----TTTTAC------TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATTAGACGGAAAGAGAACG-----------ATGAAAAG-TGTTAAC--ATGCTAATCTATGTGACAG Neotyphodium_coenophialum_90664_copy_a GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGAAG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGGGACGGAAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG Neotyphodium_coenophialum_90664_copy_b GTAAGTTCAAACTCTCTGTCTGTCTTGGAACCTCTCT-CCTCGACGCGTTCCGGTGTTGAGCCCCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-GCCGACCTCGAAC----GAC-AGGCACAAACA--GCATGAAAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCGTTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG Neotyphodium_coenophialum_90664_copy_c GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA-TTCGAGAACTG-TAGCTGACC----TTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCTGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG-------------------CAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGAAAAAGAAGG---------AAAGAAAAAG-TGTTATC--ATGCTAATCTATGTGACAG Neotyphodium_funkii_copy_a ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGAAG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGGGACGGAAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG Neotyphodium_funkii_copy_b ???????????CGCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACGTTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC---AAAAAATTAATGATTGCGGTA-TTCGAGAACTGTTAGCTGACC----TTTTTC------TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTAGAAC----GAC-GGGCACAAATA--ACATG-AAAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTTAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGAACG---------AAAGAAAAAG-TGTCATCATATGCTAATCTATGTGACAG Neotyphodium_gansuense_E7080 GTAAGTTTGACCTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC--AAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATAAGACGGAAAGAGAACGAAAAAAAAAAAAGAAGAAGGTTTTTTC--ATGCTAATCTATGTGACAG Neotyphodium_gansuense_E7082 GTAAGTTTGACCTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC--AAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATAAGACGGAAAGAGAACGAAAAAAAAAAAAGAAAAAGGTTTTTTC--ATGCTAATCTATGTGACAG Neotyphodium_gansuense_E7083 GTAAGTTTGACCTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC--AAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATAAGACGGAAAGAGAACGAAAAAAAAAAAAGAAAAAGGTTTTTTC--ATGCTAATCTATGTGACAG Neotyphodium_gansuense_E7084 GTAAGTTTGACCTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC--AAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATAAGACGGAAAGAGAACGAAAAAAAAAAAAGAAGAAGGTTTTTTC--ATGCTAATCTATGTGACAG Neotyphodium_gansuense_E7086 GTAAGTTTGACCTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC--AAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATAAGACGGAAAGAGAACGAAAAAAAAAAAAGAAAAAGGTTTTTTC--ATGCTAATCTATGTGACAG Neotyphodium_gansuense_E7087 GTAAGTTTGACCTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC--AAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATAAGACGGAAAGAGAACGAAAAAAAAAAAAGAAGAAGGTTTTTTC--ATGCTAATCTATGTGACAG Neotyphodium_gansuense_E7088 GTAAGTTTGACCTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC--AAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATAAGACGGAAAGAGAACGAAAAAAAAAAAAGAAGAAGGTTTTTTC--ATGCTAATCTATGTGACAG Neotyphodium_gansuense_E7090 GTAAGTTTGACCTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC--AAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATAAGACGGAAAGAGAACGAAAAAAAAAAAAGAAGAAGGTTTTTTC--ATGCTAATCTATGTGACAG Neotyphodium_gansuense_E7092 GTAAGTTTGACCTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC--AAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATAAGACGGAAAGAGAACGAAAAAAAAAAAAGAAGAAGGTTTTTTC--ATGCTAATCTATGTGACAG Neotyphodium_gansuense_MYA_3669 ??????TTGACCTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC--AAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATAAGACGGAAAGAGAACGAAAAAAAAAAAAGAAGAAGGTTTTTTC--ATGCTAATCTATGTGACAG Neotyphodium_gansuense_var._inebrians_MYA_1187 ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AATCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTATTTCGAGAACTG-TAGCTGATC---CATTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCAGAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC-AAAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATGAGACGGAAAGAGAACG-AAAAAAAAAAAAAAAAAG-TGTTGTC--ATGCTAATCTATGTGACAG Neotyphodium_gansuense_var._inebrians_MYA_1228 ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGGCCACGACG-TACACGCCCGCGGCCCAATGGAC-AATCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTATTTCGAGAACTG-TAGCTGATC---CATTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCAGAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC-AAAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATGAGACGGAAAGAGAACG-AAAAAAAAAAAAAAAAAG-TGTTGTC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_A28_copy_a GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCTCCCTCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC---TTTTTTC------TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGGAAAAGAAGC---------GAAGAAAAAG-TATTATC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_A28_copy_b GTAAGTTTGACCTCTCTGTTTGTCTCGGGGACCCCCT-CATCGACGCGTTCCAGTGTTAAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGACCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCTTGTTGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC-AAAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATGAGACGGAAAGAGAACG-AAAGATAAAAAGAAAAAA-TGTTAAC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_CBS112035_copy_a GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCTCCCTCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC---TTTTTTC------TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGGAAAAGAAGC---------GAAGAAAAAG-TATTATC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_CBS112035_copy_b GTAAGTTTGACCTCTCTGTTTGTCTCGGGGACCCCCT-CATCGACGCGTTCCAGTGTTAAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGACCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCTTGTTGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC-AAAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATGAGACGGAAAGAGAACG-AAAGATAAAAAGAAAAAA-TGTTAAC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_CBS112036_copy_a GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCTCCCTCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC---TTTTTTC------TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGGAAAAGAAGC---------GAAGAAAAAG-TATTATC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_CBS112036_copy_b GTAAGTTTGACCTCTCTGTTTGTCTCGGGGACCCCCT-CATCGACGCGTTCCAGTGTTAAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGACCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCTTGTTGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC-AAAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATGAGACGGAAAGAGAACG-AAAGATAAAAAGAAAAAA-TGTTAAC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_CBS113029_copy_a GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCTCCCTCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC---TTTTTTC------TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGGAAAAGAAGC---------GAAGAAAAAG-TATTATC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_CBS113029_copy_b GTAAGTTTGACCTCTCTGTTTGTCTCGGGGACCCCCT-CATCGACGCGTTCCAGTGTTAAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGACCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCTTGTTGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC-AAAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATGAGACGGAAAGAGAACG-AAAGATAAAAAGAAAAAA-TGTTAAC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_MYA_1235_copy_a ???????????CTCTCTGTTTGTCTTGGGGACCCCCTCCCTCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC---TTTTTTC------TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGGAAAAGAAGC---------GAAGAAAAAG-TATTATC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_MYA_1235_copy_b ???????????CTCTCTGTTTGTCTCGGGGACCCCCT-CATCGACGCGTTCCAGTGTTAAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGACCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCTTGTTGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC-AAAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATGAGACGGAAAGAGAACG-AAAGATAAAAAGAAAAAA-TGTTAAC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_MYA_1236_copy_a ???????????CTCTCTGTTTGTCTTGGGGACCCCCTCCCTCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA-TTCGAAAACCG-TAGCTGACC---TTTTTTC------TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGGAAAAGAAGC---------GAAGAAAAAG-TATTATC--ATGCTAATCTATGTGACAG Neotyphodium_guerinii_MYA_1236_copy_b ???????????CTCTCTGTTTGTCTCGGGGACCCCCT-CATCGACGCGTTCCAGTGTTAAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGACCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCTTGTTGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC-AAAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATGAGACGGAAAGAGAACG-AAAGATAAAAAGAAAAAA-TGTTAAC--ATGCTAATCTATGTGACAG Neotyphodium_melicicola_MYA_1188_copy_a ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGAAG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGGCCCGGAGATGGGACGGAAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG Neotyphodium_melicicola_MYA_1188_copy_b ???????????CTCTCTGTTTGTCTTGGGG-CCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGACCACGACG-TGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGACACAAATA--ACATG-AAAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGAAGG---------AAAGAAAAAG-TGCCATC--ATGCTAATCTATGTGACAG Neotyphodium_melicicola_MYA_1190_copy_a ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGAAG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGGCCCGGAGATGGGACGGAAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG Neotyphodium_melicicola_MYA_1190_copy_b ???????????CTCTCTGTTTGTCTTGGGG-CCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGACCACGACG-TGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGACACAAATA--ACATG-AAAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGAAGG---------AAAGAAAAAG-TGCCATC--ATGCTAATCTATGTGACAG Neotyphodium_occultans_Lrr1_copy_a GTAAGTTCAAACTCTCTGTCTGTCTTGGAACCCCTCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----CCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-GCCGACCTCGAAC----AAC-AGGCACAAACA--GCATGAAAAATCTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCGTTGAGCTACATACATACCGCCCCGGAGATGAAACGGAAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG Neotyphodium_occultans_Lrr1_copy_b GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAACCCGGCCACGACG-TGCAC-------GCCCAATGAAC-AGTCGTGATGAGAGGCGGACCGAGAC--AAAAAAAATAATGATTGCTGTA-TTCGAGAACTG-TAGCTGACC----TTTTCC------TTTTCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAAC----GAC-AGGCACAAACAACACATG-AAAAACTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTA----CATACCGCCCTGGAGATGAGACGGAAAGAGATCG-----------ATAAAAAG-TGTGAAC--ATGCTAATCTATGTGACAG Neotyphodium_sp._DQ675589 GTAAGTTTGACCTCTCTGTTTGTCTCGGGGACCCCCT-CATCGACGCGTTCCAGTGTTAAG--CCCCTGATTTCGTACCCC-----GCCGGGCCCGACCACGACG-TACACGCCCGCGGCCCAATGGAC-AGTCTTGTTGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA-TTCGAGAACTG-TAGCTGATC---TTTTTTC------TTTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--ACATG--AAAACTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTTTTCATAATC-AAAAAAGTCTCCATTGAGCTG----CATACCGCTCTGGAGATGAGACGGAAAGAGAACG-AAAAATAAAAAGAAAAAA-TGTTAAC--ATGCTAATCTATGTGACAG Neotyphodium_tembladerae_MYA_2564_copy_a ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGAAG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGGGACGGAAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG Neotyphodium_tembladerae_MYA_2564_copy_b ???????????CTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA-TTCGAGAGCTG-TAGCTGACC----TTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCTGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAA-------------------GTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGAAAAAGAAGG---------AAAGAAAAAG-GTTTATC--ATGCTAATCTATGTGACAG Neotyphodium_tembladerae_Ms803_copy_a GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGACG-TGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA-TTCGAGAGCTG-TAGCTGACC----TTTTTC------TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCTGCCGACCTCGAAC----GAC-AGGCACAAATA--ACATG-AAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAA-------------------GTCTCCATTGAGCTA----CATACCGCCCTGGAGATGGGACGGAAAAAGAAGG---------AAAGAAAAAG-GTTTATC--ATGCTAATCTATGTGACAG Neotyphodium_tembladerae_Ms803_copy_b GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT-CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCC-----GCCGAGCCCGGCCACGAAG-TGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA-TTCGAGAACTG-TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAAC----GAC-AGGCACAAACA--GCATG-AAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGGGACGGAAAGAGAACG---------AAAGAAAAAG-TGTTATC--ATGCTCATCCATGTGACAG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = tubB) = N: 1-579; CODONPOSSET CodonPositions (CHARACTERS = tubB) = N: 1-579; END; [ The following blocks are output data for analysis step 3695 ] BEGIN TREES; TITLE Tb8468; LINK TAXA = TaxaForAnalysisStep3695; TREE Fig._9 = [&R] ((Epichloe_glyceriae_200747,Epichloe_glyceriae_200755),((((Epichloe_amarillans_200743,Epichloe_amarillans_200744,Neotyphodium_chisosum_64037_copy_a),(Epichloe_sp._E9924,(Epichloe_festucae_434,Epichloe_festucae_90661,Neotyphodium_coenophialum_90664_copy_a,Neotyphodium_funkii_copy_a,(Neotyphodium_melicicola_MYA_1188_copy_a,Neotyphodium_melicicola_MYA_1190_copy_a),Neotyphodium_tembladerae_Ms803_copy_b,Neotyphodium_tembladerae_MYA_2564_copy_a)),Epichloe_baconii_200745,((Epichloe_baconii_76552,Epichloe_baconii_90167),(Neotyphodium_coenophialum_90664_copy_b,Neotyphodium_occultans_Lrr1_copy_a))),(((Epichloe_brachyelytri_200752,Epichloe_brachyelytri_201561),(Neotyphodium_aotearoae_MYA_1192,Neotyphodium_melicicola_MYA_1188_copy_b,Neotyphodium_melicicola_MYA_1190_copy_b)),(((((Epichloe_clarkii_200742,Epichloe_typina_200736),Epichloe_typina_201666),(((Epichloe_typina_E1158,Neotyphodium_guerinii_MYA_1236_copy_a,Neotyphodium_guerinii_CBS113029_copy_a,Neotyphodium_guerinii_A28_copy_a,Neotyphodium_guerinii_CBS112035_copy_a,Neotyphodium_guerinii_CBS112036_copy_a,Neotyphodium_guerinii_MYA_1235_copy_a),Epichloe_typina_200738),Epichloe_typina_200740)),(Epichloe_typina_200739,Epichloe_sylvatica_200751),Epichloe_sylvatica_200748),(Epichloe_typina_E5303,((((Epichloe_typina_201667,(Neotyphodium_tembladerae_Ms803_copy_a,Neotyphodium_tembladerae_MYA_2564_copy_b)),Neotyphodium_coenophialum_90664_copy_c),Epichloe_typina_201669),Neotyphodium_chisosum_64037_copy_b))))),(((((Epichloe_bromicola_201558,Epichloe_bromicola_200750),Epichloe_bromicola_200749),Neotyphodium_occultans_Lrr1_copy_b),Neotyphodium_chisosum_64037_copy_c),(Epichloe_elymi_200850,Epichloe_elymi_201551,Neotyphodium_funkii_copy_b))),((((Neotyphodium_guerinii_MYA_1236_copy_b,Neotyphodium_guerinii_CBS113029_copy_b,Neotyphodium_guerinii_A28_copy_b,Neotyphodium_guerinii_CBS112035_copy_b,Neotyphodium_guerinii_CBS112036_copy_b,Neotyphodium_guerinii_MYA_1235_copy_b),Neotyphodium_sp._DQ675589),((Neotyphodium_gansuense_E7080,Neotyphodium_gansuense_E7084,Neotyphodium_gansuense_MYA_3669,Neotyphodium_gansuense_E7087,Neotyphodium_gansuense_E7088,Neotyphodium_gansuense_E7090,Neotyphodium_gansuense_E7092),Neotyphodium_gansuense_E7082,Neotyphodium_gansuense_E7083,Neotyphodium_gansuense_E7086)),(Neotyphodium_gansuense_var._inebrians_MYA_1228,Neotyphodium_gansuense_var._inebrians_MYA_1187))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4867] END;