#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 19:21 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ruiz-sánchez E., Sosa V., & Mejia-saulés M. 2008. Phylogenetics of Otatea Inferred
from Morphology and Chloroplast DNA Sequence Data, and Recircumscription of Guaduinae
(Poaceae: Bambusoideae). Systematic Botany, 33(2): 277-283.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1884]

[ The following blocks are input data for analysis step 3842 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep3842;
        DIMENSIONS NTAX=25;
        TAXLABELS
            Arthrostylidium_ecuadorense
            Atractantha_radiata
            Aulonemia_clarkiae
            Aulonemia_fulgor
            Aulonemia_laxa
            Aulonemia_patula
            Bambusa_vulgaris
            Chusquea_bilimekii
            Eremocaulon_asymmetricum
            Eremocaulon_aureofimbriatum
            Glaziophyton_mirabile
            Guadua_aculeata
            Guadua_amplexifolia
            Guadua_angustifolia
            Guadua_longifolia
            Guadua_paniculata
            Guadua_velutina
            Neurolepis_aperta
            Olmeca_recta
            Olmeca_reflexa
            Otatea_acuminata
            Otatea_fimbriata
            Otatea_glauca
            Otatea_sp_nov
            Rhipidocladum_racemiflorum
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3746]

	TITLE Molecular_Combined;
	LINK TAXA = TaxaForAnalysisStep3842;
	DIMENSIONS NCHAR=30;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                       10        20        30]
[                                        .         .         .]
Arthrostylidium_ecuadorense     ?????CACCGATGGCAATGCGGGTTCAAAA
Atractantha_radiata             ?????CACCAATTGCAA-AAGTGGTCAAAA
Aulonemia_clarkiae              AGTAT???????????ATACGTGGTCAAAA
Aulonemia_fulgor                AGTATCACCGAGTGTAATAAGTTGTCAAAA
Aulonemia_laxa                  CACCT???????????ATAAGTTGTTAAAC
Aulonemia_patula                ?????CACAAATGGCAGTAAGTGGTTCAAC
Bambusa_vulgaris                CACCTCTCTGGATGCGATAAAGGGCCCAAA
Chusquea_bilimekii              CACCTCTTTAGGTGCGACAAAGGTCCACAC
Eremocaulon_asymmetricum        -GTACTCTCGAGTTTAATAAGTGGTCAAAA
Eremocaulon_aureofimbriatum     -GTACTACCGAGTTTAATAAGTGGTCAAAA
Glaziophyton_mirabile           ?????CACCGATTGCAACAAGTGGTCAAAA
Guadua_aculeata                 AGTACTACCGAGTGTAATGAGTGGTCAAAA
Guadua_amplexifolia             -GTACTTCCGAGTGTAATGAGTGGTCAAAA
Guadua_angustifolia             -GTACTACCGAGTGTAA-GAGTGGTCAAAA
Guadua_longifolia               -GTACTACCGAGTGTAATGAGTGGTCAAAA
Guadua_paniculata               -GTACTACCGAGTGTAATGAGTGGTCAAAA
Guadua_velutina                 AGTACTACCGAGTGTAATGAGTGGTCAAAA
Neurolepis_aperta               ?????CTCCGGTTGTAATAAGGGGCCACAA
Olmeca_recta                    -GTATCACCGAGTGTAATACGTGGTCAAAA
Olmeca_reflexa                  AGTACCACCGAGTGTAATAAGTGGTCAAAA
Otatea_acuminata                AGTATCACCGAGTGTAAT-AGTGGTCAACA
Otatea_fimbriata                -GTATCACCGAGTGTAAT-AGTGGTCAACA
Otatea_glauca                   -GTATCACCGAGTGTAAT-AGTGGTCAACA
Otatea_sp_nov                   -GTATCACCGAGTGTAAT-AGTGGTCAACA
Rhipidocladum_racemiflorum      CACCTCACCGATTGCAGT-AGTGGTCAAAA
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = Molecular_Combined) = 
		N: 1-30;
CODONPOSSET  CodonPositions (CHARACTERS = Molecular_Combined) = 
		N: 1-30;
END;
[ The following blocks are output data for analysis step 3842 ]
BEGIN TREES;
      TITLE Tb8615;
      LINK TAXA = TaxaForAnalysisStep3842;
      TREE Fig._2 = [&R] (Bambusa_vulgaris,(Chusquea_bilimekii,(Neurolepis_aperta,(Arthrostylidium_ecuadorense,((Glaziophyton_mirabile,(Rhipidocladum_racemiflorum,(Atractantha_radiata,(Aulonemia_laxa,Aulonemia_patula)))),((Olmeca_reflexa,((Guadua_velutina,(Guadua_longifolia,(Guadua_amplexifolia,(Guadua_aculeata,(Guadua_paniculata,Guadua_angustifolia))))),(Eremocaulon_asymmetricum,Eremocaulon_aureofimbriatum))),(Aulonemia_fulgor,((Otatea_acuminata,(Otatea_sp_nov,(Otatea_fimbriata,Otatea_glauca))),(Olmeca_recta,Aulonemia_clarkiae)))))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2855]


END;