#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 20, 2025; 6:53 GMT TreeBASE (cc) 1994-2008 Study reference: Li J., & Wang Y. 2007. Phylogenetic Reconstruction among Species of Chiritopsis and Chirita sect. Gibbosaccus (Gesneriaceae) based on nrDNA ITS and cpDNA trnL-F Sequences. Systematic Botany, 32(4). TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1903] [ The following blocks are input data for analysis step 3886 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3886; DIMENSIONS NTAX=24; TAXLABELS Chirita_anachoreta Chirita_dielsii Chirita_hamosa Chirita_heterotricha Chirita_linearifolia Chirita_longgangensis Chirita_minutimaculata Chirita_mollifolia Chirita_ophiopogoides Chirita_peteropoda Chirita_pumila Chirita_sp.057291 Chirita_spinulosa Chirita_urticfolia Chirita_wentsaii Chiritopsis_bipinnatifida Chiritopsis_cordifolia Chiritopsis_glandulosa Chiritopsis_mollifolia Chiritopsis_repanda Chiritopsis_sp.001 Chiritopsis_sp.054271 Ornithoboea_wildeana Paraboea_rufescens ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3775] TITLE ITS; LINK TAXA = TaxaForAnalysisStep3886; DIMENSIONS NCHAR=708; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Chirita_anachoreta TCGAGACCTGCAAAGCAGACCCGCGAACATGTTTT-TGAATACGCTACCAGTGGCCGCGATGTT-GGGTGCATATTTTTTTTGTGTCCAACGTCACGGCCTCGAGA---CCCCCAAGTGCGTCTCAAGGCCGCTTGGGA-GTACTAACCTCT--CGGCGCGGCAAGCGCCAAGGAAA---ACCTTAATGGCAA-CTCTCCGTCCG-GGTGCCGTACGCGGTACCTC--GGGACGTGACGAGGACGCGTCCTATCGAATAGGACATTTATACATGTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATCAGGTTGAGGGCACGTCTGCCTGGGCGTCACGCATCTCGTCGCCCACCAAG----CATCTCCCCCTGCGCCGTGTGTAAGCAGTGCCGGGCGG--TGATGCACCC----GAAGGTGGTGCGGAAATTGGCCTCCCGTTA-TCCCG--GTGTAGCGGCCGGCCCAAAATATGATACCGTGTAGATGCATGTCACACGATGCTTGGTGGTTGTATTAC-CCGACTTGCGAACT---ATCGTGTG--GGGATGCATC-TGGCCACGGGCGCGACCCAACGGCGCACTAGA------TTGCCCCTCGA Chirita_dielsii TCGAGACCTGCAAAGCAGACCCGCGAACATGTTT---CAATACGCTACTAGTGGCCGCGATGTT-GGATGCATA--TTTTTTGCCCCCAACGTCACGGCCTCGA-----CCCCCAAGCGCGTCTCAAAGCCGCTCGGGA-GTGCTAACCCCTATCGGCGCGGAAAGCGCCAAGGAAA---ACCGTAACTGCTA-CTCTCCGTCCA-GGTGCCGTCCGCGGCAAGCCAGAGGACGTGGTGAGGATGCGCCCTATCGAATAGGACAATATAATA---AACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATCAGGTTGAGGGCACGTCTGCCTGGGCGTCACGCATCTCGTCGCACCCCAGAAT--CATCTCTCCCCAATGCTC-GAAAAGCAGTGTCGGGCGG--TGATGCATCC---CGAAGGTGGTGCGGAAATTGGCCTCCCGTTA-TCCTC--GTGTAGCGGCCGGCCCAAAATATGATACCGTGTCGATGCATGTCACACGATGCTTGGTGGTTGTATTCC-TCGACTTGCGAACT---ATCGTGTG--AGACTGCATC-GGGCCACGGACGCGACCCAACGAGGCACTAGT------TTGCCCCTCGA Chirita_hamosa TCGATACCTGCAAAGCAGACCTGTGAACATGTTT----AACA-ACTGTG-GTGGCCATGACATC-GGATGC--------TTTGTGTTCGATGTCATGACCCCAA------TCCCAAGTTGCGT---GAGTTGCTTGGGA-GTACTAACCTCT--CGGCGCAGAAAGCGCCAAGGAAT---ACCATAACGAACACCTCTGCGTTCG-GGTGCCGTTCGCGGTGCCC---GAGACGTGA--AGG-AGCTTC--ATTGAATAG-------TCATA----ACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATCAGGCCGAGGGCCCGTCTGCCTGGGCGTCACGCATCTCGTCACCCCCCCAA---ATGTCCTCTCCCCTCACTC--AAAG----TGTTTGGAGA-TGGATGAATCC----GAAGGAGGGGTGGATATTGGCCTCCCGTTA-TCCAT--CTGTAGCGGCTGGCCCAAA-TAGTAAACCGTGTCGATGGAAGTTGCACGATAGGTGGTGGTTGGATTCC-TCAACTTGCGAACT---ATCATGCG--GGACTCCATC-GGTCTACGGGCACGAACCCATTGG-CAATAGA------TTG-CCCTCGA Chirita_heterotricha TCGAAACCTGGAAAGCAGACCCGCGAACATTTTCGAAAAATACGCTCGC---GTTCGCGACGTTTGGATGC-------TTTTGTGTCCGACGTCACGACCACGA------CCCCAGGTGGCGC---GAGTCTCCTGGGC-GCGCTGACCTCT--CGGCGCGAAAAGCGCCAAGGAAAA--AGCATACCGGGCACCTCCCCGTCGT-GGTGCTGTTCGCGGTACCC---AGGACGCGGCGAGG-CGCGTCCTATCGAATA---------GATAA-TAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCAGGCTGAGGGCACGTCTGTTTGGGCGTCACGCATCTCGTCGCCGCCTCCCACGCCGTCTTCTTCCCG-ACCC-GAAAG----TGTCGGGGGA--CGACGCATAC---GGAGGAGGGTGGGGATATTGGCCTCCCGTTA-TCCTTGTGTGTAGCGGTTGGCCCAAA-CAACGTACCGGGCCGAACGAAGTCACACGATACGTGGTGGTTGGATTCC-TCAACTCGCGAGCT---GTCGTGCA--GGACTGCATG-GAGCCACGGGCACGACCCAAGGG--CAAAAGA------TTG-CCCTCGA Chirita_linearifolia TCGAAACCTGTAAAGCAGACCCGCGAACATGTTT--AAAACACGCTTGC---GTTCGCGACGTT-GGATTC-------TTTTGTGTCCAACGCCACGACCTCGA------CCCAAAGTGGCGC---AAGTCTCTTGGGC-GGGCTAACCTCT--CGGCGCGAAAAGCGCCAAGGAAA---AGCAAACCGAGCACCTCTCCATCCT-GGTGCTGTTCGTCGTACCT---AGGACGTGATGAGG-CGCGTC-GATTGAATA---------GATC--TAAGGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGCCTTCAGGCTGAGGGCACGTCTGTTTGGGCGTCACGCATCTCGTGAACGCCTCCCGCGTCGTCCACTTCCCC-ACTC-AAAAG----TGTCGGGGGG--CGATGCGTAG----GAGGAGCGT-GGGATATTGGCCTCCCGTTA-TCCTTGCGTGTAGCGGCTGGCCCAAA-TAATAAACCGTGCCGAAGGTAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTTGCGAGCTT--ATCGTGTAGAGGACTGCATC-GATCCACGGGCAAGACCCGATGG--CAAAAGA------TTG-CCCTCGA Chirita_longgangensis TCGAAACCTGTAAAGCAGACCCGCGAACATGTTT--AAAACACGCTTGC---GTTCGCGACGTT-GGATTC-------TTTTGTGTCCAACGCCACGACCTCGA------CCCAAAGTGGCGC---AAGTCTCTTGGGC-GGGCTAACCTCT--CGGCGCGAAAAGCGCCAAGGAAA---AGCAAACCGAGCACCTCTCCATCCT-GGTGCTGTTCGTCGTACCT---AGGACGTGATGAGG-CGCGTC-GATTGAATA---------GATC--TAAGGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGCCTTCAGGCTGAGGGCACGTCTGTTTGGGCGTCACGCATCTCGTGAACGCCTCCCGCGTCGTCCACTTCCCC-ACTC-AAAAG----TGTCGGGGGG--CGATGCGTAG----GAGGAGCGT-GGGATATTGGCCTCCCGTTA-TCCTTGCGTGTAGCGGCTGGCCCAAA-TAATAAACCGTGCCGAAGGTAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTTGCGAGCTT--ATCGTGTAGAGGACTGCATC-GATCCACGGGCAAGACCCGATGG--CAAAAGA------TTG-CCCTCGA Chirita_minutimaculata TCGAAACCTGCAAAGCAGACCCGCGAACATGTTT--AAAATACGCTTGC---GTTCGCGACGTC-GGATGC-------TTTTGTGTCTGACGTCAGGACGTCGA------CCCAAAGTGGCGC---AAGTCTCTTGGGC-GTGCTAACCTCT--CGGCGCGAAAAGCGCCAAGGAAA---AGCATACCGAGCACCTCTCCATCCT-GGTGCTATTCGTCATCACC---AGGACGTGATGAGG-CGCGTC-TATTGAGTA---------GATC--TAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGCCTCCAGGTTGAGGGCACGTCTGCTTGGGCGTCGAGCATCTCGTCCACGCCTCCCACGTCGTCTACTTCCCC-ACTC-GAAGT----TGTCGGGGGA--CGATGCGTACGG-AGCGGAGGGT-GGGATATTGGCCTCCCGTTAACCCTTGCGTGTTGCGGCTGGCCCAAA-AAATATACCGTGCCGAAGGAAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTTGCGAGCC---ATCGTGTA--GGACTGCATC-GAGCCACGGGCACGACCAAATGG--CAAAAGA------TTG-CCCTCGA Chirita_mollifolia TCGAAACCTGCAAAGCAGACCCGCGAACATGTTC--GAAACACGCTTGC---GTTCGCGACGTT-GGACGG-------TTTTGTGTCCAACGCCACGACCTCGA------CCCAAAGTGGCGC---AAGTCTCTTGGGC-GGGCTAACCTCT--CGGCGCGAAAAGCGCCAAGGAAA---AGCGTACCGAGCACCTCTCCATCCT-GGTGCTGTTCGCCCTGCCC---AGGACGTGATGAGG-CGCGTC-GATCGAAGA---------GATC--TAACGACTCTCGGCAACGGATATCTCGGCTCCCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGCCTTCAGGCTGAGGGCACGTCTGTTTGGGCGTCACGCATCTCGTCAACGCCTCCCGCGTCGTCCTCTTCCCC-AATC-AAAGG----TGCAGGGGGA--CGACGCGCACG---GAGGAGGGT-GGGATATTGGCCTCCCGTTA-TCCTTGCGTGTAGCGGCTGGCCCAAA-CAGTATACCGTGCCGAAGGAAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTTGCGAGCT---ATCGTGTA--GGACTGCATC-GAGCCACGGGCACGACCCGATGG--CAAATGA------TTG-CCCTCGA Chirita_ophiopogoides TCGAAACCTGCAAAGCAGACCCGCGAACATGTTG--AAAATACGCTTGC---GTTCGCGACGTT-GGATGC-------CTTCGTGTCCGACGCCAGGACGTCGA------CCCAAAGTGGCGC---AAGTCTCTTGGGC-GCGCTAACCTCT--CGGCGCGAAAAGCGCCAAGGAAAAAAAGCATACCGAGCACCTCTCCGTCCT-GGTGCTGTTCGTCGTAACC---GGGACGTGAAGAGG-CGCGTC-TATGGAATTA--------GATC--TGACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGCCTTCGGGCTGAGGGCACGTCTGTTTGGGCGTCAAGCATCTGGTCAACGCCTCCCACGTCGTCTACTCCCCC-ACTC-GAAGG----TGCCGGGGGA--CGATGCGTACGG-AGAGGAGGGT-GGGATATTGGCCTCCCGTTAACCCTTGCGTGTTGCGGCCGGCCCAAA-AAATGCACCGTGCCGGAGGAAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTTGCGGGCC---ATCGTGTA--GTACTGCATC-GAGCCACGGGCACGACCCAATGG--CAAAGGA------TTG-CCCTCGA Chirita_peteropoda TCGAAACCTGCAAAGCAGACCCGCGAACATTTTCGAAAAATACGCTCGC---GCTCGCGACGTTTGGATGC-------TTTTGTGTCCGACGTCACGACCACGACCC---CACCAGGTGGCGC---GAGTCTCCTGGGC-GTGCTGACCTCT--CGGCGCGAAAAGCGCCAAGGAAAA--AGCATACCGGGCGCCTCCCCGTCGT-GGTGCTGTTCGCGGTACCC---AGGACGCGGCGAGG-CGCGTC-TATCGAATA---------GATA--TAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCAGGCTGAGGGCACGTCTGTTTGGGCGTCACGCATCTCGTCGCCGACTCCCACGCCGTCTTCTTCCCG-ACCC-GAAAG----TGTCGGGGGA--CGACGCATACGG-GGAGGAGGGTGGGGATATTGGCCTCCCGTTA-TCCTTGTGTGTAGCGGTTGGCCCAAA-CAACGTACCGGGCCGAACGAAGTCACACGATACGTGGTGGTTGGATTCC-TCAACTCGCGAGCT---GTCGTGCA--GGACTGCATG-GAGCCACGGGCACGACCCAAGGG--CAAAAGA------TTG-CCCTCGA Chirita_pumila TCGAAACCTGCAAAGCAGACCCGCGAACATGTTT---AAATACGCTGCT------------------------------------------------TCCTCGAGA----CCCCAAGCGTGCCGCGAAGCCGCTTGGGTGAACCTAACCTCT--CGGCGCGGAAAGCGCCAAGGAAA---ACCGTAATTGCTA-CTCTCCGTCCGCGGTGCCGTCCGCGGTGCCC---AGGATGTGATGAGGAGGCGCC-TATTGAATAG-ATAATAATACA----ACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATCAGGTTGAGGGCACGTCTGCCTGGGCGTCACGCATCTCGTCGC-CCCCAG-----CGTCTCCCCCCGG-GCTA-GAAAAG---TGCCGGGCGGGCTGATGCGTCCATCCAAAGGAGGGGCGGAAACTGGCCTCCCGTTA-TCCTT--GCGTAGCGGCCGGCCCAAAATAGGATGCCGTGTCAATGCATGTCACACGATACTTGGTGGTTGTATTCC-TCGACTCGCAAACT---ATCGTGTG--GTATTGCATC-GGGCCACGGATGCGACCCAACGGCGCACTTGATTTGTTTTGCCCCACGA Chirita_sp.057291 TCGATACCTGCAAAACAGACCTGTGAACATGTTT----AACA-ACTGTT-GTGGTTGTGACATC-GGGTGC--------TTTGTGTCCGACGTCACGACCCCAA------CCTCAAGTGGCGT---GAGCTGCTTGGGA-GTACTAACCACT--CGGCGCGGAAAGCGCCAAGGAAA---ACCATAACGAACATCTTTGCATCCG-GTTGCCGTTCGCGGTGCCC---GAGACGTGA--AGG-AGCTTCC-ATTGAATAG-------TCATA----ACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATCAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCTCGTCACCCCCCCAA---ATGTCCTCTTCCCTCACTC--GAAG----TGTTTGGAGA-TGGATGAATTA----GAAGGAGGGGTGGATATTGGCCTCCCGTTA-TCCAT--CTGTAGCGGCTGGCCCAAA-TAGTACACCGTGTCGATGGAAGTCGCACGATAGGTGGTGGTTGGATTCC-TCAACTTGTGAACT---ATCGTGCG--GGACTCCATT-GGTCTACGGGCGTGAACCCATTGG-CATTAGA------TTG-CCCTCGA Chirita_spinulosa TCGAAACCTGCAAAGCAGACCCGCGAACATGTTG--AAAATACGCTTGC---GTTCGTGACGTT-GGATGC-------CTTGGTGTCCAACGCCAGGACGTCGA------CCCAAAGTGGCGC---AAGTCTCTTGGGC-GTGCTAACCTCT--CGGCGCGAAAAGCGCTAAGGAAAAAAAGCATACCGAGCACCTCTCCGTCCT-GGTGCTGTTCGTCGTAACC---AGGACGTGATGAGG-CGCGTC-TATGGAATTA--------GATC--TGACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGCCTTCGGGCTGAGGGCACGTCTGTTTGGGCGTCAAGCATCTCGTCAACGCCTCCCACGTCGTCTACTTCCCC-GCTC-GGAGG----TGTCGGGGGA--CGATGCGTACGG-AGAGGAGGGT-GGGATATTGGCCTCCCGTTAACCCTTGCGTGTTGCGGCCGGCCCAAA-AAATATACCGTGTCGAAGGAAGTCGCACGATACGTGGTGGTTGGATTCCCTCAACTTGCGAGCC---ATCGTGTA--GTACTGCATC-GAGCCACGGGCACGGCCCAATGG--CAAAAGA------TTG-CCCTCGA Chirita_urticfolia TCGAAACCTGCAAAGCAGACCCGCGAACATGTTT----AATACGCAAGT---GGTCGCGATGTT-GGATGC-------CTTTGTGTCCAACATCGCGACCTTCGA-----CCCCAAGTGGCGC---AAGTCGCTTGGGA-GTTCTAACCTCT--CGGCGCGGCAAGCGCCAAGGAAA---ACCGTAATTGCTA-CTCTCCGTCGTGGGTGCTGTCCGCGGTACCC---AGGACGTTATGAGGAGGCATC-TATCGAATAG-------ATATA--CAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATCAGGTTGAGGGCACGTCTGCCTGGGCGTCACGCATCTCATCGCCCCCCCGA----CATCTCCTTCCCC-GCTC-AAAAG----CGTCGGGAGA-TTGGTGCATTC----GAAGGAGGGGCGGATATTGGCCTCCCGTTA-TCCAT--GTGTAGCGGCCGGCCCAAAATAAGATACCGTGTCGATGGATGTCACACGATACGTGGTGGTTGTATTTC-TCAACATGCAAACTA-TATCGTGCG--GGACTGCATC-GAGCCACGGACACGACCCAACGGCGCACTAGA------TTGCCCCTCGA Chirita_wentsaii TCGAAACCTGCAAAGCAGACCCGCGAACATGTTG--AAACTACGCTTGC---GTTCGCGACGTT-GGATGC-------CTTTGTGTCCAACGCCAGGACGTCGA------CCCAAAGTGGCGC---AAGTCTCTTGGGC-GTGCTAACCTCT--CGGCGCGAAAAGCGCCAAGGAAAAAAAGCATACCGAGCGCCTCTCCGTCCT-GGTGCTGTTGGTCGTAACC---AGGACGTGATGAGG-CGCGTC-TATGGAATTA--------GATC--TGACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGCCTTCGGGCTGAGGGCACGTCTGTTTGGGCGTCAAGCATCTCGTCAACGCCTCCCACGTCGTCTACTTCCCC-ACTC-GAAGG----TGTCGGGGGA--CGATGCGTACGG-AGAGGAGGGT-GGGATATTGGCCTCCCGTTAAGCCTTGCGTGTTGCGGCCGGCCCAAA-AAATAAACCGTGCCGAAGGAAGTCGCACGATACGTGGTGGTTGGATTCCCTCAACTTGCGAGCC---ATCGTGTA--GTACTGCATC-GAGCCACGGGCACGGACCAATGG--CAAAAGA------TTG-CCCTCGA Chiritopsis_bipinnatifida TCGAAACCCGCAAAGCAGACCCGCGAACATGTTT--GAAATACGCTTGC---GTTCGCGACGTC-GGATGC-------TTTCGTGTCCGACGCCACGACCTCGA------CCCTAAGTGGCGC---AAGTCTCTTGGGACGTGCTAACCTCT--CGGCGCGAAAAGCGCCAAGGAAA---AGAATACCGAGCACCTCTCCATCCT-GGTGCTGTTCTCCGTAACC---AGGACGTGTTGAGG-CGCACC-TATTGAAAA---------GATC--TAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCTCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGTCTTCAGGCTGAGGGCACGTCTGTTTGGGCGTCACGCATCTCGTCAACCCCTCCCACGTCGTCATCTTCCCCCACTA-AAAGG----TGCTGGTGGA--CGATGCGTAT----GAGGAGGGT-GGGATATTGGCCTCCCGTTA-TCCTTGAGCGTAGCGGCTGGCCCAAA-CAATATACCGTGCCGAAGGAAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTTGCGAGCT---ATCGTGTA--GGACTGCATTCGAGCAACGGGCACGACCCGATGG--CAGAAGA-----ATTG-CCCTCGA Chiritopsis_cordifolia TCGAAACCTGCAAAGCAGACCCGCGAACATGTTT--AAGATACGCTTGC---GTTTGCGACGTT-GGATGC-------TTTTGTGTCCGACGCCACGACCTCGACCTCGACCCCAAGTGGCGC---AAGTCTCTTGGGC-GTGCTAACCTCT--CGGCGCGAAAAGCGCCAAGGAAA---AGCATACCGAGCGCCCCTCCATCCT-GGTGCTGTTCGCCGCACCC---GGGATGTGATGAGG-CGCGTC-TATTGAATA---------GATA--TAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGCTTTCGGGCTGAGGGCACGTCTGTTTGGGCGTCACGCACCTCGTCCACGCCTCCCACGTCGTCTTCTTCCCC-ACCC-AAAGG----TGTCGGGGGA--CGATGCCTGC---GTAGGAGGGT-GGGATATTGGCCTCCCGTTA-TCCTTGCGCGTAGCGGCTGGCCCAAA-CAATATACCGTGCCGAAAGAAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTTGCGAGCT---ATCGTGTA--AGATCGCATC-GAGCCACGGGCACGACCGAATGG--CAAGAGA------TTG-CCCTCGA Chiritopsis_glandulosa TCGAAACCTGCAAAGCAGACCCGCGAACATGTTT--AAAATACGCTTGC---GTTCGCGACGTC-GGATAC-------TTTTGTGTCCGGCGCCTCGACCACGA------CCCTAAGTGGCGC---AAGTCTCTTGGGC-GTGCTAACCTCT--CGGCGCGAAAAACGCCAAGGAAA---AGCATATCGAGCACCTCTCCATCCT-GGTGCTGTTCGCCGTACCC---AGGACGTGTTGAGG-CGCGCC-TATTGAAAA---------GGTC--TAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGTCTTCAGGCTGAGGGCACGTCTGTTTGGGCGTCACGCATGTCGTCAACCCCTCCCACGTCGTCTTCTTCCTC-ACTC-AAAGG----TGTCGGGGGA--CGATCT-GACG---GAGGAGGGT-GGGATATTGGCCTCCCGTTA-TCCTTGAGCGTAGCGGCTGGCCCAAA-CAATATACCGTGCCGAAGGAAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTTGCGAGCT---ATCGTGTA--AGACTGCATTCGAGCCACGGGCACGACCCGATGG--CAGAAGA-----CTTG-CCCTCGA Chiritopsis_mollifolia TCGAAACCTGTAAAGCAGACCCGCGAACATGTTT--AAAATATGCGTGC---GTTCGTGGTGTT-GGATAA-----TTTTTTTGGTCCAACGCCACGACCTCGA------CCCGAAGTGGCGC---AAGTCTCTCGGGT-GTTCTAACCTAT--CGGCGCAAAAAGCGCCAAGGAAA---ATGATACGGAGCACCACTCCGTCCT-GGTGTTGTTCGTCGCACCC---AGGACGTGATGAGG-CGCGTC-TCTTGAATA---------GATC--TAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGCCTTCAGGCTGAGGGCACGTCTGTTTGGGTGTCACGCATCTCGTCAACGCCTCCCACGTCGCCTTCTTCCCC-ACTC-AAGGG----TGTCGGGGGA--CGATGCGTACG---GGGGAGGGT-GGGGTATTGGCCTCCCGTTA-TCCTTGCGTGTAGCGGCTGGCCCAAA-CAATATACCGTGCCGAAGGAAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTTGCGAGCT---ATCGTGTA--GGACTGCATC-GATCCACGGGCACGACCCAATGG--CAAAAGA------TTG-CCCTCGA Chiritopsis_repanda TCGAAACCTGCAAGGCTGACCCGCGAACATGTTT--AAAATGCGCTTGC---GTTCGCGGCGTC-GGATAC-------TTTTGTGTCCGAAGTCACGACCACGA------CCCTAAGTGGCGC---AAGTCTCTTGGGC-GTGCTGACCTTT--CGGCGCGAAAAGCGCCAAGGAAA---AGCATATCGAGCACCTCTCCATCCT-GGTGCTGTTCGCCGCACCT---AGGACGTGTTGAGG-CGCGCC-TATTGAATA---------GATC--TAACGACTCTCGGCAACGGATATCTCGGCTCTGGCATCGATGAAGAACGTAGCGAAATGCGACACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGTCTTCAGGCTGAGGGCACGTCTGTTTGGGCGTCACGCATGTCGTCAACCCTTCCCACGTCGTCTTCTTCCCC-ACTC-AAAGG----TGTCAAGGGA--CGATCT-TACG---GAGGAGGGT-GGGATATTGGCCTCCCGTTA-TCCTTGAGCGTAGCGGCTGGCCCAAA-CAATATACCGTGCCGAAGGAAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTCGCAAGCT---ATCGTGTA--GGACTGCATTCGTTCCACGGGCACGACCTGATGG--CAGAAGG-----CTTG-CCCTCGA Chiritopsis_sp.001 TCGAAACCTGCAAAGCAGACCCGCGAACATGTTT--AAAATACGCTTGC---GTTCGTGAACTC-GGATAC-------TTTTGTGTCCGACGCCACGACCTCGA------CCCTAAGTGGCGC---AAGTCTCTTGGGC-GTGCTAACCTCT--CGGCGTGAAAAGCGCCAAGGAAA---ATCATATCGAGCACCTCTCCATCCT-GGTGCGGTTCGCCGTACCT---AGGATGTGTTGAGG-CGTGCC-TATTGAACA---------GATC--TAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGTCTTCAGGCTGAGGGCACGTCTGTTTGGGCGTCACGCATCTCGTCAACCCCTCCCACGTCGTCTTCTTCCCC-ACTC-AAAGG----TGTCGGGAGA--CGATGCGTACG---GAGGAGGGT-GGGATATTGGCCTCCCGTTA-TCCTTGAGCGTAGCGGCTGGCCCAAA-CAATATACCGTGCCGAAGGAAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTTGCGAGCT---ATCGTGTA--GGACTGCATTCGAGCCACGGGCACGGCCCGATGG--CAGAAGC-----ATTG-CCCTCGA Chiritopsis_sp.054271 TCGAAACCTGCAAAGCAGACCCGCGAACATGTTT--AAGATACGCTTGC---GTTTGTGACTTT-GGATGC-------TTTTGTGTCCGGCGCCACGACCTCGAACTCGACCCCAAGTGGCGC---AAGTCTCTTGGGC-GTGCTAACCTCT--CGGCGCGGAAAGCGCCAAGGAAA---AGCATACCGAGCGCCCTCTCATCCT-GGTGCTGTTCGCCGCACCC---GGGATGTGATGAGG-CGTGTC-TATTGAATA---------GATA--TAAGGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGCCTTCGGGCTGAGGGCACGTCTGTTTGGGCGTCACGCACCTCGTCAACGCCTCCCACGTCGTCTTCTTCCCC-ACCC-AAAGG----TGTCGGGGGA--CGATGCCTGC---GTAGGAGGGT-GGGATATTGGCCTCCCGTTA-TCCTTGCGCGTAGCGGCTGGCCCAAA-AAGTATACCGTGCCGAAAGAAGTCGCACGATACGTGGTGGTTGGATTCC-TCAACTTGCGAGCT---ATCGTGTA--AGACCGCATC-GAGCCACGGGCACGACCAAATGG--CAAAAGA------TTG-CCCTCGA Ornithoboea_wildeana TCGAGACCTGTAAAGCAGACCCGTGAGCATGTTC-AAATCGAGTTGGTC---GTCGTGATGTC--GGATGC-------CTTCGTGTCGAACACCACGCACCTGG------CCCCAGACGACGC---AAGTCGCCCGGGCGCGCCTAACCTCT--CGGCGCGGCAAGCGCCAAGGAAG---ACAGGATCGATCGCCTCTCAGTCCG-GGTGCTGTACGTGGTACCC-ATGATGTTGAT-GAGG-GGAATCAATTTGAGAT-----ATATAGCCA-TGATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCATAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACCAGGCCGAGGGCACGTCTGCCTGGGCGTCGCGCATCGCGTCGCCCCCCGG--CATCATCCGTCCCCGC-CCTC----------TGCGGGGAGA-TGGTGCATGA-----AGAGTCGGGGCGGATACTGGCCTCCCGTTA--CCCG-TGCGTAGCGGCCGGCCCAAA-TAAAAGACCGTGCCGATGGACGTCGCACGATATGTGGTGGCTGGATTCC-TCAACCTGCTGCGGACTGTCGTGTG-AGACTTGTATC-GAGC-CACGGGCGCGACCCAATGG-CGGAAGA-------TGCCCCTCGA Paraboea_rufescens TCGAAACCTGCAAAGCAGACCCGTGAACATGTTT--AATCAAATATGTG---GCTGTGATTCT--GGACGT------CGTTGCGTCCAGCTCCATGGTCCGTA-------ACCCAAACGACGC---AAGTCTGTTGGGT--AACTAACCTCT--CGGCGCGGCAAGCGTCAAGGATA--TAC-AGACCGATCGCCTCTCCAAGT--GGTGCCGTACGCGGCTCCC---GATATGTGG--AGG-AGCATC-TATCAAAAT---------AGTC-GTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATCAGGCTGAGGGCACGTCTGCCTGGGCGTCACACATCTCGTCGCCCCCCAAA----CATCGTCTTCCCCCACTT--------AGTGTAGGGAAG--TGACGCATG-----AATGTGGGGGTGGAAATTGGCCTCCCGTTA-TCCAG-TGTGTGGCGGCCGGCCTAAA-TATGAAACCGTGCCGATGAAGGTGACACGATATGTGGTGGTTGGATTCC-TCAACTTGCAAACTATCGTGATGTT-GCACTA-TATC-GAGC--CGGGTGTGGACCCAATGG-C-TGAAA------ATG-CCCTCGA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS) = N: 1-708; CODONPOSSET CodonPositions (CHARACTERS = ITS) = N: 1-708; END; [ The following blocks are output data for analysis step 3886 ] BEGIN TREES; TITLE Tb8659; LINK TAXA = TaxaForAnalysisStep3886; TREE Fig._2 = [&R] (((((((Chirita_longgangensis,Chirita_mollifolia),Chirita_linearifolia),(((Chirita_spinulosa,Chirita_wentsaii),Chirita_ophiopogoides),Chirita_minutimaculata),Chiritopsis_mollifolia,(((Chiritopsis_glandulosa,Chiritopsis_repanda),Chiritopsis_sp.001),Chiritopsis_bipinnatifida),(Chiritopsis_sp.054271,Chiritopsis_cordifolia)),(Chirita_heterotricha,Chirita_peteropoda)),((Chirita_pumila,(Chirita_dielsii,Chirita_anachoreta)),Chirita_urticfolia)),(Chirita_hamosa,Chirita_sp.057291)),(Paraboea_rufescens,Ornithoboea_wildeana)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4951] END;