#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 20, 2024; 1:07 GMT TreeBASE (cc) 1994-2008 Study reference: Tanaka E., & Tanaka C. 2007. Phylogenetic study of clavicipitaceous fungi using acetaldehyde dehydrogenase gene sequences. Mycoscience, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1925] [ The following blocks are input data for analysis step 3936 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3936; DIMENSIONS NTAX=21; TAXLABELS Aciculodporium_take_1 Aciculodporium_take_2 Claviceps_purpurea_China Claviceps_purpurea_Japan Cordyceps_heteropoda Cordyceps_militaris1 Cordyceps_militaris2 Cordyceps_ophioglossoides Cordyceps_paradoxa Ephelis_japonica1 Ephelis_japonica4 Epichloe_typhina Gibberella_zeae_2 Heteroepichloe_bambusae Heteroepichloe_sasae Neotyphodium Neurospora_crassa1 Nomuraea_atypicola Parepichloe_cinerea Ustilaginoidea_virens_China Ustilaginoidea_virens_Japan ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2927] TITLE 'ALDH1-1 Exon-3'; LINK TAXA = TaxaForAnalysisStep3936; DIMENSIONS NCHAR=889; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aciculodporium_take_1 CTTGGTGTCTGCGGTCAAATCATACCCTGGAACTTTCCTCTTCTGATGCTTGCCTGGAAGATTGGCCCTGCTTTGGCCACGGGTAACACGGTCATTATGAAGTCTGCTGAGCAAACTCCCTTGTCCGCTCTCGTCTTTGCCAACCTTGTCAAGGAAGCCGGTTTTCCGCCCGGTGTTTACAACCTCCTCTCTGGTTTCGGCAACGTTGCTGGTGTTGCCATCTCGTCTCACATGGACATTGACAAGGTCGCCTTCACGGGCTCGACCATCGTTGGCCGTACCATCATGAAGGCTGCTGCCTCTTCCAACTTGAAAAAGGTTACTCTTGAGCTTGGTGGCAAATCTCCCAACATCGTCTTCAAGGATGCCGATATCGAACAGGCCATTTCATGGGTCAACTTTGGCATCTACTTCAACCACGGCCAGTGCTGCTGCGCAGGTTCCCGCATCTTTGTTCAGGAGGAAATTTACGACGAGTTCCTCGCCGCATTCAAGAAGCGTGCGCAACAGAACAAGGTCGGCGACCCCTTTGATGAGGATACCTTCCAGGGTCCCCAGGTCAGTCAGCTGCAGTATGACCGCATCATGAGCTACATCAAGTCCGGCAAGGAGGAAGGTGCCACTGTGGAAATCGGTGGTGAGCGCCACGGCAAGAAGGGATATTTCATCCAACCAACTATTTTCAGCAATGTACGCCCTGAGATGAAGATTATGCAAGAAGAAATCTTTGGCCCCGTGTGCGCCATTTCCAAGTTCAAGGATGAGGAGGAAGCCATTAGGTTGAGTAACCAGTCCAACTACGGTCTTGCGGCTGCTATTCACACCGAGGACCTCAACACGAGCATTCGTGTCAGCAATGCATTGAAGGCTGGTACCGTATGGGTCAATT Aciculodporium_take_2 CTTGGTGTCTGCGGTCAAATCATACCCTGGAACTTTCCTCTTCTGATGCTTGCCTGGAAGATTGGCCCTGCTTTGGCCACTGGTAACACGGTCATTATGAAGTCTGCTGAGCAAACTCCCTTGTCCGCTCTCGTCTTTGCCAACCTCGTCAAGGAAGCCGGTTTTCCGCCCGGTGTTTACAACCTCCTCTCTGGTTTCGGCAACGTTGCTGGTGCTGCCTTCTCGTCTCACATGGACATTGACAAGGTTGCCTTCACGGGCTCGACCATCGTTGGCCGTACCATCATGAAGGCTGCTGCCTCTTCCAACTTGAAAAAGGTTACTCTTGCGCTTGGTGGCAAATCTCCCAACATCGTCTTCAAGGATGCCGATATCGAACAGGCCATTTCATGGGTCAACTTTGGCATCCACTTCAACCACGGCCAGTGCTGCTGCGCAGGTTCCCGCATCTTTGTTCAGGAGGAAATTTACGACGAGTTCCTCGCAGCATTCAAGAAGCGTGCGCAACAGAACAAGGTCGGCGACCCCTTTGATGGGGATACCTTCCAGGGTCCCCAGGTCAGTCAGCTGCAGTATGACCGCATCATGAGCTACATCAAGTCCGGCAAGGAGGAAGGTGCCACTGTGGAAATCGGTGGTGAGCGCCACGGCAAGAAGGGATATTTCATCCAACCAACTATTTTCAGCAATGTACGCCCTGAGATGAAGATTATGCAAGAAGAAATCTTTGGCCCCGTGTGCGCCATTTCCAAGTTCAAGGATGAGGAGGAAGCCATTAGGTTGAGTAACCAGTCCAACTACGGTCTTGCGGCTGCTATTCACACCAAGGACCTCGACACGAGCATTCGTGTCAGCAATGCATTGAAGGCTGGTACCGTATGGGTCAATT Claviceps_purpurea_China CTTGGTGTCTGCGGCCAAATCATTCCCTGGAACTTTCCTCTTCTCATGCTGGCCTGGAAGATTGGCCCTGCCTTGGCCACCGGCAACACTATCATCTTGAAGACTGCTGAGCAAACACCATTGTCTGGTCTCGTCTTTGCCAACCTCGTCAAGGAGGCTGGATTCCCGCCTGGTGTTTTCAACCTTCTCTCTGGGTTCGGCAAGGTTGCTGGCGCTGCCATCTCCTCTCACATGGACATCGACAAGGTTGCTTTCACAGGGTCGACAATCGTCGGTCGTACTATCATGAAGGCTGCTGCATCGTCCAACCTGAAAAAGGTCACCCTCGAACTTGGCGGTAAATCTCCAAACATTGTCTTCAACGACGCCGATATAGAACAAGCCATCTCATGGGTCAACTTTGGAATTTACTTCAACCATGGGCAATGCTGCTGCGCAGGTACTCGAATCTTCGTTCAGGAGGGTATCTATGACCAATTCCTTGAAGCTTTCAAGAAACGTGCCCAAAAAAACAAGGTCGGCGATCCGTTTGCGGAAGATACCTTCCAGGGTCCTCAGGTCAGCCAACTCCAGTATGACCGTATCATGAGCTACATTCAGTCTGGCAAGGACGAAGGTGCTACCATTGAAGTCGGTGGCGAACGACATGGCGACAAGGGCTATTTTATCCAACCCACCATTTTCAGCAATGTACGATCGGACATGAAGATTATGAAGGAAGAAATCTTCGGTCCTGTCTGCGCCATCTCCAAATTTAAGGATGAAGAAGAAGTCATCAGGCTGAGCAACGAAACTCCGTACGGTCTTGCTGCTGCTATTCACACCAAGGACCTAAACACGAGCATTCGCGTCTGCAACGCGCTGAAGGCTGGTACTGTCTGGGTCAATT Claviceps_purpurea_Japan CTTGGTGTCTGCGGCCAAATTATTCCCTGGAACTTTCCTCTTCTCATGCTGGCCTGGAAGATTGGCCCTGCCTTGGCCACCGGCAATACCATCATCTTGAAGACTGCTGAGCAAACACCATTATCTGGCCTCGTCTTTGCCAACCTTGTCAAGGAGGCCGGGTTCCCGCCTGGTGTTTTCAACCTCCTCTCTGGGTTCGGCAAGGTTGCTGGCGCTGCTATCTCCTCTCACATGGACATCGACAAGGTTGCTTTCACAGGGTCGACGATCGTCGGTCGTACTATCATGAAGGCTGCTGCATCGTCAAACCTCAAAAAGGTCACCCTTGAACTTGGCGGTAAATCTCCAAACATTGTCTTTAACGATGCCGATATAGAACAAGCCATCTCATGGGTCAACTTTGGAATTTACTTCAACCATGGGCAGTGCTGCTGCGCAGGTACCCGAATCTTTGTTCAGGAGGGTATCTACGACCAATTCCTTGAAGCTTTCAAGAAACGTGCCCAAAAAAACAAAGTCGGCGATCCGTTTGCGGAAGATACCTTCCAGGGTCCTCAGGTCAGCCAGCTCCAGTATGACCGTATCATGAGCTACATTCAGTCTGGCAAGGACGAAGGTGCTACCATTGAAGTCGGTGGCGAACGACATGGCGACAAGGGCTATTTCATTCAACCTACCATTTTCAGCAACGTACGATCGGACATGAAGATCATGAAGGAAGAAATCTTCGGTCCTGTCTGCGCCATCTCCAAATTCAAGGATGAAGAAGAAGTCATCAGGCTGAGCAACGAAACTCCGTACGGTCTTGCTGCTGCTATTCACACCAAGGACCTCAACACGAGCATTCGCGTCTGCAACGCGTTGAAGGCTGGTACCGTCTGGGTCAATT Cordyceps_heteropoda GTGGGCGTCTGCGGTCAAATCATCCCCTGGAACTTCCCTCTTCTCATGATGTCCTGGAAAATTGGCCCTGCTCTCGCCACCGGCAACACCGTAGTCATGAAGACCGCCGAGCAAACTCCGCTGTCGGCTCTGGTCCTTGCCAACTTCATCAAGGAGGCTGGATTCCCCCCTGGTGTCTTCAACCTACTCTCTGGATTTGGCAAGGTTGCCGGCGCCGCCATCTCCTCTCACATGGACATCGACAAGGTCGCCTTCACTGGCTCAACTATCGTCGGCCGTGCTATCATGAAGGCTGCTGCCTCGTCCAACCTGAAAAAAGTCACGCTCGAGTTGGGCGGCAAGTCTCCCAACATTGTCTTCAATGACGCCGACATCGAGCAGACCCTTTCCTGGGTCAACTTTGGAATCTACTTCAATCACGGTCAGTGCTGTTGCGCCGGGTCTCGTATCTTTGTCCAGGAGGGCATTTACGACAAGTTCCTCGAGGCCTTCAAGAAGCGTGCTGCTCAAAACAAGCTTGGGGACCCATTCGATGAGACAACCTTCCAGGGTCCCCAAGTCAGCCAGCTTCAGTTCGATCGTATCATGGGTTACATCAAATCCGGCAAGGATGAGGGCGCCACCGTTGAGATTGGTGGCGCGCGCCACGGTGACAAGGGCTATTTTATCCAGCCCACCATCTTCTCCAACGTCCGCTCCGACATGAAAATCATGCAGGAGGAGATCTTTGGCCCCGTCTGCACCGTCGCCAAATTTAAAGATGAGGAAGAGGCTATTAAGCTGGGCCACGAAACCACCTACGGCTTGGCTGCTGCCGTACACACAAAGGACCTGAACACCGCCCTCCGTGTCAGCTACGCGCTGAAGGCGGGCACCGTCTGGGTCAACT Cordyceps_militaris1 ATTGGTGTCTGCGGTCAGATCATTCCCTGGAACTTCCCTCTTCTCATGCTTTCCTGGAAGATTGGCCCTGCCCTGGCTACTGGCAATACCATTGTCATGAAGACTGCTGAGCAGACTCCTCTCTCTGGCCTCGTCTTTGCCCAGTTCGTCAAGGAAGCCGGCTTCCCCCCCGGTGTCTTCAACCTGATCTCCGGCTTCGGCAAGACGGCCGGTGCTGCCCTCTCCAACCACATGGACGTTGACAAGATCGCCTTCACTGGTTCCACCCTCGTCGGCCGCACCATCCTCAAGGCCGCTGCTTCCTCCAACCTGAAGAAGGTCACCCTCGAACTCGGTGGCAAGTCCCCCAACATTGTCTTCAACGACGCCGATATCGAGTCCGCCATCTCCTGGGTCAACTTTGGCATCTACTTCAACCATGGCCAATGCTGCTGTGCCGGCTCCCGCATCTTTGTGCAGGAGGGCATCTACGACAAGTTCCTCGAGGCCTTCAAGAAGCGCGCCGCCGCCAACGCTGTTGGTGACCCCTTTGACTCCAAGACCTTCCAGGGTCCCCAGGTCAGCCAGCTCCAGTACGACCGCATCATGAGCTACATCAAGTCCGGCAAGGAGGAGGGTGCCACGGTCGAGATTGGCGGCGAGCGCCACGGCGACAAGGGCTACTTCATCAAGCCCACCATCTTCTCCAACGTCCGCTCCGACATGAAGATTATGCAGGAGGAAATCTTTGGCCCCGTCTGCTCCATCTCCAAGTTCTCCACCGAGGAGGAGGCCATCAAGCTCGGCAACGAGACCACCTACGGTCTCGCCGCCGCGGTCCACACCAAGGACCTCAACACCAGCATCCGCGTCAGCAACGCGCTCAAGGCCGGTACCGTCTGGGTCAACT Cordyceps_militaris2 ATTGGTGTCTGCGGTCAGATCATTCCCTGGAACTTCCCTCTTCTCATGCTTTCCTGGAAGATTGGCCCTGCCCTGGCTACTGGCAATACCATTGTCATGAAGACTGCTGAGCAGACTCCTCTCTCTGGCCTCGTCTTTGCCCAGTTCGTCAAGGAAGCCGGCTTTCCCCCCGGTGTCTTCAACCTGATCTCCGGCTTCGGCAAGACGGCCGGTGCTGCCCTCTCCAACCACATGGACGTTGACAAGATCGCCTTTACTGGTTCCACCCTCGTCGGCCGCACCATCCTCAAGGCCGCTGCTTCCTCCAACCTGAAGAAGGTCACCCTCGAACTCGGTGGCAAGTCCCCCAACATTGTCTTCAACGACGCCGATATCGAGTCCGCCATCTCCTGGGTCAACTTTGGAATCTACTTCAACCACGGCCAATGCTGCTGTGCCGGCTCCCGCATCTTTGTGCAGGAGGGCATCTACGACAAGTTCCTCGAGGCCTTCAAGAAGCGCGCCGCCGCCAACGCTGTCGGTGACCCCTTTGACGCCAAGACCTTCCAGGGCCCTCAGGTCAGCCAGCTCCAGTACGACCGCATCATGAGCTACATCAAGTCCGGCAAGGAGGAGGGTGCCACGGTCGAGATTGGCGGCGAGCGCCACGGCGACAAGGGCTACTTCATCAAGCCCACCATCTTCTCCAACGTCCGCTCCGACATGAAGATTATGCAGGAGGAAATCTTTGGCCCCGTCTGCTCCATCTCCAAGTTCTCCACCGAGGAGGAGGCCATCAAGCTCGGCAACGAGACCACCTACGGTCTCGCCGCCGCGGTCCACACCAAGGACCTCAACACCAGCATCCGCGTCAGCAACGCGCTCAAGGCCGGTACCGTCTGGGTCAACT Cordyceps_ophioglossoides CTCGGTGTCTGCGGTCAGATCATTCCCTGGAACTTCCCCCTGCTCATGCTGGCATGGAAGGTTGGCCCGGCCCTCGCCACCGGCAACACCATCGTCATGAAGTCTGCTGAGCAGACCCCCCTGTCGGCTCTGGTTTTCGCCAACTTCGTTAAGGAGGCTGGCTTCCCTGCTGGTGTTTTTAACCTCGTCTCTGGCTTCGGCAAGGTTGCCGGTGCTGCCATCTCCTCCCACATGGACATCGATAAGGTCGCTTTCACTGGCTCTACTGTTGTTGGCCGGACTATCATGAAGGCTGCTGCCGCGTCCAACCTCAAGAAGGTCACCCTCGAGTTGGGTGGCAAGTCTCCCAACATCGTCTTCAACGACGCCGATATCGAGCAAACCGTCTCCTGGGTCAACTTCGGCATCTACTTCAACCACGGCCAGTGCTGCTGTGCTGGCACGCGTATCTTTGTCCAGGAGGGTGTCTACGACAAATTCCTCGAGGCTTTCAAGAAGCGAGCCGCCCAAAACAAGGTTGGCGACCCATTCGACAAGCACACTTTCCAAGGCCCCCAAGTCAGCCAGCTTCAGTTCGACCGCATCATGAGCCACATCGAGTCCGGAAAGGAGGAGGGAGCCACCGTCGAGATCGGTGGTGAGCGCCACGGTTACCAGGGCTACTTCATCCAGCCTACTATCTTCTCCAATGTCCGCCCCGACATGAAGATCATGCAGGAGGAGATTTTCGGCCCCGTCTGTGCCATTTCTAAGTTCAAGACCGAGGAGGAGGCAATCAAGCTGGGCAACGACACTACCTACGGCCTAGCTGCTGCCGTTCATACCAAGGACCTCAACACCGCTATCCGTGTCACTAACGCCCTCAAGGCCGGTACTGTCTGGGTCAACT Cordyceps_paradoxa ATTGGTGTCTGCGGCCAGATCATTCCCTGGAACTTCCCCCTGCTCATGCTGGCATGGAAGGTTGGCCCGGCCCTCGCCACCGGCAACACAATCGTCATGAAGTCTGCTGAGCAGACTCCCCTGTCGGCTCTGGTTTTCGCCAACTTGGTCAAGGAGGCCGGCTTCCCTGCTGGTGTTTTCAACCTCATCTCTGGCTTCGGCAAGGTTGCCGGTGCTGCCATCTCCTCCCACATGGACATTGACAAGGTCGCCTTCACTGGCTCTACTATTGTGGGCCGGACCATCATGAAGGCTGCTGCCTCGTCCAACCTGAAGAAGGTCACCCTCGAGTTGGGTGGCAAGTCTCCCAACATCGTATTCAACGACGCGGATATTGATCAGACCGTCTCCTGGGTCAACTTCGGCATCTACTTCAACCACGGCCAGTGCTGCTGCGCTGGCACGCGCATCTTTGTCCAGGAGGGCGTCTACGACAAGTTCCTTGAGGCTTTCAAGAAGCGTGCTTCTCAGAACAAGGTCGGCGACCCGTTCGACAAGCAGACTTTCCAAGGCCCCCAGGTCAGCCAGCTTCAGTTCGACCGCATCATGGGCTACATCAAGTCCGGGAAGGAGGAGGGAGCCACCGTCGAGATCGGTGGCGAGCGCCACGGTGACAAGGGCTACTTCGTCCAGCCTACTATCTTCTCCAACGTCCGCTCCGACATGAAGATCATGCAAGAGGAGATCTTCGGCCCCGTCTGCGCCATTTCGAAGTTCAAGACCGAGGAGGAGGCCATCAAGCTGGGCAACGACACCAACTACGGCCTGGCTGCTGCCGTTCATACCAAGGATCTCAACACCGCTATCCGCGTCACCAACGCCCTCAAGGCCGGTACCGTCTGGGTTAACT Ephelis_japonica1 ATTGGTGTTTGCGGTCAGATTATCCCGTGGAACTTTCCTCTTCTAATGCTTACATGGAAGATCGGCCCTGCTCTGGCAACAGGCAACACTATCGTGATGAAGACTGCTGAGCAGACGCCCCTCTCTGCCCTTGTATTCGCCCAATTCATCAAGGAGGCTGGCTTCCCGCCTGGTGTTTTCAACCTTCTCTCTGGGTTCGGCAAGATTGCTGGTGCAGCTATAGCATCTCATATGGATGTTGACAAAGTTGCCTTCACCGGCTCTACTGTCGTTGGTCGCACTATCATGAAGGCTGCTGCCTCGTCAAACTTGAAAAAGGTCACACTTGAGCTTGGGGGCAAATCACCCAATATCGTCTTCAACGATGCCGACATTGAGCAGGCAATTTCGTGGGTCAACTTTGGAATCTACTATAATCATGGTCAGTGCTGCTGTGCTGGTGCCCGCATCTTCGTCCAAGAGGGCATCTACGACAAGTTTCTCGAGGCTTTCAAGAAGCGTGCTCAGCAGAACAAGGTTGGCGACCCCTTTCACAAGGATACCTTCCAAGGCCCTCAGGTCAGCCAGCTTCAGTACGATCGCATCATGAGCTACATCAAGTCTGGCAAAGAAGAAGGTGCTGTCGTTGAAATTGGTGGTGAGCGCCACGGTGACAAGGGATACTTTATCCAACCCACTATCTTCAGCAATGTCCACCATGATATGAAGATCATGCAGGAAGAAATTTTCGGCCCTGTCTGCTCCATTTCAAAATTCAAGGATGAAGAGGAAGCCATCAAACTAGGTAACCAGACTACCTACGGTCTGGCCGCCGCCATTCACACCAAGGACCTTGGTACTAGTATTCGTGTTAGCAACGCCCTGAAGGCCGGTACTGTCTGGGTCAACT Ephelis_japonica4 ATTGGTGTTTGCGGTCAGATTATCCCGTGGAACTTTCCTCTTCTAATGCTTACATGGAAGATCGGCCCTGCTCTGGCAACAGGCAACACTATCGTGATGAAGACTGCTGAGCAGACGCCCCTCTCTGCCCTTGTATTCGCCCAATTCATCAAGGAGGCTGGCTTCCCTCCTGGTGTTTTCAACCTTCTCTCTGGGTTCGGTAAGATTGCGGGTGCAGCTATAGCATCTCATATGGATGTTGACAAAGTTGCCTTCACCGGCTCTACTGTTGTTGGTCGCACTGTCATGAAGGCTGCTGCCTCGTCGAACTTGAAAAAGGTCACACTTGAGCTTGGGGGCAAATCACCCAACATCGTCTTCAACGATGCCGACATTGAGCAGGCAATTTCGTGGGTCAACTTTGGAATCTACTATAATCATGGTCAGTGCTGCTGTGCTGGTGCCCGCATCTTCGTCCAAGAGGGCATCTACGACAAGTTTCTCGAGGCTTTCAAGAAGCGTGCTCAGCAGAACAAGGTTGGCGACCCCTTTCACAAGGATACCTTCCAAGGCCCTCAGGTCAGCCAGCTTCAGTACGATCGTATCATGAGCTACATCAAGTCTGGCAAAGAAGAAGGTGCTGTCGTTGAGATTGGTGGTGAGCGTCACGGTGACAAGGGATACTTTATCCAACCCACTATCTTCAGCAATGTCCACCATGATATGAAGATCATGCAGGAAGAAGTTTTCGGCCCCGTCTGCTCCATTTCAAAATTCAAGGATGAAGAGGAAGCCATCAAACTAGGTAACCAGACTACCTACGGTCTGGCCGCCGCCATTCACACCAAGGACCTTGGTACTAGTATTCGTGTTAGCAACGCCCTGAAGGCCGGTACTGTCTGGGTCAACT Epichloe_typhina ATTGGTGTTTGCGGTCAGATCATCCCCTGGAACTTCCCCCTCCTCATGCTCTCCTGGAAAATTGGCCCTGCTTTGGCCACTGGCAACACCATCGTCATGAAGTCTGCTGAACAAACTCCATTGTCTGCCCTGGTATTCGCCAACCTTGTCAAGGAAGCCGGATTTCCCGCTGGTGTGTTCAACCTCATATCTGGTTTCGGCAAGGTTGCCGGCGCCGCCATCTCCTCTCACATGGATATTGACAAGGTTGCCTTCACCGGCTCAACAATCGTTGGCCGTACCATTATGAAGGCCGCCGCCTCTTCCAACTTGAAAAAGGTCACTCTTGAACTCGGTGGCAAGTCTCCCAACATCGTCTTCAATGATGCCGACATTGAGCAGGCCATCTCATGGGTCAACTTTGGCATCTACTTCAACCACGGTCAGTGCTGCTGCGCTGGCACCCGTATTTTCGTCCAGGAGGGCATATATGACAAGTTCCTCGATGCCTTCAAGAAGCGCGCCCAGCAGAACAAGGTCGGCGACCCCTTCGCCCAGGACACCTTCCAGGGCCCTCAGGTCAGTCAGCTTCAGTACGATCGCATCATGAGCTACATCAAGTCCGGCAAGGAGGAAGGTGCCACCGTCGAGATTGGTGGTCAGCGCCACGGTGACAAGGGATACTTCATCCAGCCCACTATTTTCAGCAATGTCCGCCCTGAGATGAAGATTATGCAAGAAGAAATCTTCGGCCCTGTCTGCGCCATTTCCAAGTTCAAGGACGAGGAGGAGGCCATAAAATTGGGCAACGAGACCACCTACGGTCTCGCGGCCGCGATCCACACCAAGGACCTCAACACCAGCATTCGCGTCAGCAACGCCTTGAAGGCCGGCACTGTTTGGGTCAACT Gibberella_zeae_2 ATCGGTGTCTGCGGTCAGATTATCCCCTGGAACTTCCCCCTTCTCATGCTGGCATGGAAGATCGGACCTGCTCTGGCCACTGGTAACACCGTCGTCATGAAGACTGCTGAGCAGACTCCTCTCTCCGCTCTCGTCTTCACTCAGTTCATTGAGCAGGCTGGTTTCCCTGCTGGTGTCTTCAACCTTGTCTCTGGTTACGGCAAGACTGCCGGTGCCGCCCTCTCTTCTCACATGGACGTTGACAAGATCGCCTTCACTGGTTCTACCGTCATTGGCCGACAGATCATGAAGGCTGCTGCTTCTTCCAACCTCAAGAAGGTCACCCTCGAGCTTGGTGGCAAGTCCCCCAACATCGTCTTCGAGGATGCCGACATCGAGGAGGCCATCAACTGGGTCAACTTTGGTATCTACTACAACCACGGCCAGTGCTGCTGTGCTGGTACCCGTATCTTTGTCCAGGAGTCCATCTACGACAAGTTCCTCGCTGCCTTCAAGAAGCGAGCTGAGGAGAACAAGGTCGGTGACCCCTTCAACGAGGAGACCTTCCAGGGTCCCCAGGTCTCTCAGCTCCAGTACGACCGTATCATGGGCTACATCAAGGCCGGTAAGGACGAGGGTGCCACCGTCGAGATCGGTGGTGAGCGTCTCGGTGACAAGGGTTACTTCATCAAGCCCACCATCTTCTCCAACGTCCGCCCCGACATGAAGATCATGCAGGAGGAGATTTTCGGCCCCGTCTGCGCTATTTCCAAGTTCAAGGACGAGGCTGAGGTCATTGACCTTGCCCACGACACCGCTTACGGTCTCGCTGCCGCTGTCCACACCAAGAACCTCAACACTGCCCTCCGCGTTTCCAACGCTCTCAAGGCCGGAACTGTCTGGGTGAACT Heteroepichloe_bambusae ATTGGCGTCTGCGGTCAAATAATCCCGTGGAATTTCCCTCTTCTCATGCTTGCCTGGAAGATTGGCCCCGCGTTGGCCACGGGCAACACTGTCGTGATGAAGTCTGCTGAGCAGACGCCTCTCTCTGCCCTTGCCTTTGCCAGGCTCGTCAAGGAGGCCGGCTTCCCCCCCGGCGTCTTCAACCTCCTTTCTGGGATTGGCAAGGTTGCCGGGGCAGCCATAGCCTCTCACATGGACATTGACAAAGTTGCCTTCACCGGATCGACCGTCGTTGGCCGTAGTATCATGCAGGCTGCTGCCGCATCCAACCTGAAGAAGGTCACCCTTGAGCTCGGCGGCAAGTCGCCCAACATCGTCTTCAACGATGCCGACATTGAGCAGGCGATTTCATGGGTCAACTTTGGCATTTACTTTAACCATGGCCAGTGCTGCTGCGCTGGTACCCGCATCTTCGTGCAGGAGGGCATCTACGACAAGTTCCTCGAGGCTTTCAAGAAGCGTGCGCAGCAGAACAAGATTGGCAACCCCTTTGAAAGCGATACGTTTCAAGGACCACAGGTCAGTCAGCTCCAATACGATCGCATCATGAGCTACATCAAGTCTGGACAGGACGAAGGCGCCGTTGTGGAGGTGGGCGGTGCACGCCACGGGGACAAGGGATACTTTATCCAGCCCACCATCTTCAGCAATGTCCACCATGACATGAAGATCATGCAAGAAGAAATCTTCGGCCCCGTCTGCTCCATTTCCAAGTTCAAGGACGAGGAGGAGGTTATCAGGCTGGGCAACCAGACCAACTACGGTCTGGCGGCTGCCATTCACACCAAGGATCTTGCCACCACCATTCGCGTCAGCAACGCCTTAAAGGCCGGCACCGTCTGGGTCAACT Heteroepichloe_sasae ATTGGCGTTTGCGGTCAAATCATCCCGTGGAACTTCCCTCTTCTAATGCTTGCATGGAAGATCGGCCCTGCTCTGGCAACTGGCAACACTATCGTGATGAAGTCTGCTGAGCAGACGCCTCTCTCTGCCCTTGCATTTGCCGGGCTTGTCAAGGAGGCCGGCTTCCCTCCTGGAGTTTTCAATCTCATTTCTGGTATTGGCAAGGTTGCTGGTGCAGCCATAGCCTCTCACATGGACATTGACAAAGTTGCCTTCACTGGCTCTACTGTCGTTGGCCGCAGCATCATGAAGGCTGCTGCCTCATCGAACCTGAAAAAGGTTACACTTGAACTTGGCGGCAAATCACCCAACATCGTCTTCAACGATGCCGACATTGAGGAGGCGATTTCATGGGTCAACTTTGGAATTTACTACAACCATGGCCAGTGCTGCTGCGCCGGTACCCGCATCTTCGTCCAAGAGGGCATCTACGACAAGTTCCTCGAGGCCTTCAAGAAGCGTGCTCAGCAGAACAAGATTGGCGACCCCTTCGACAGCGACACCTTCCAAGGCCCTCAGGTCAGCCAGCTTCAGTACGATCGCATCATGAACTACATCAAGTCTGGAAAGGAAGAAGGTGCCGTGGTTGAGATTGGCGGCGAACGCCACGGTGACAAGGGATACTTTATCCAGCCCACCATCTTCAGCAATGTCCACCATGACATGAAGATAATGCAGGAAGAAATCTTCGGCCCCGTATGCTCCATTTCCAAGTTCAAGGATGAGGAGGAAGCCATCCAACTGGGCAACCAGACCAACTACGGTCTGGCGGCTGCCATTCACACCAAGGATCTTAACACCACCATCCGTGTCAGCAATGCCCT{AT}AAGGCCGGTACTGTCTGGGTCAACT Neotyphodium ATTGGTGTTTGCGGTCAGATCATCCCCTGGAACTTTCCTCTCCTCATGCTCTCCTGGAAAATTGGCCCTGCTTTGGCCACTGGCAACACTATCGTCATGAAGTCTGCTGAGCAAACTCCATTGTCTGCCCTGGTTTTCGCCAACCTTGTCAAGGAAGCCGGGTTTCCCGCTGGTGTGTTCAACCTCATATCTGGTTTCGGCAAGGTTGCCGGCGCCGCCATCTCCTCTCACATGGACATTGACAAGGTTGCCTTCACTGGCTCAACCATCGTGGGCCGTACTATTATAAAGGCCGCCGCCTCTTCCAACTTGAAGAAGGTTACTCTTGAACTCGGTGGCAAGTCTCCCAATATCGTCTTCAATGATGCCGACATTGAGCAGGCAATCTCATGGGTCAACTTTGGCATCTACTTCAACCACGGCCAGTGCTGCTGCGCTGGTACCCGTATTTTCGTCCAGGAGGGCATCTACGACAAGTTCCTCGATGCCTTCAAGAAGCGCGCCCAGCAGAACAAGGTCGGTGACCCCTTCGCCCAGGACACCTTCCAGGGCCCTCAGGTCAGTCAGCTTCAGTACGATCGCATCATGAGCTACATCAAGTCCGGCAAGGAGGAAGGTGCCACCGTCGAGGTTGGTGGTCAGCGCCACGGTGACAAGGGCTACTTCATCCAGCCCACTATTTTCAGCAATGTCCGCCCTGAGATGAAGATTATGCAAGAAGAAATCTTCGGCCCTGTCTGCGCCATTGCCAAGTTCAAGGACGAGGAGGAGGCTATCAAATTGGGCAACGAGACCACCTACGGTCTTGCGGCCGCGATCCACACCAAGGACCTCAAAACCAGCATTCGCGTCAGCAACGCCTTGAAGGCCGGTACTGTTTGGGTCAACT Neurospora_crassa1 CTCGGTGTTTGCGGTCAGATCATCCCCTGGAACTTCCCTCTCCTCATGCTTGCCTGGAAGGTCGGCCCCGCCCTGGCCACCGGTAACACTATCGTCATGAAGACCGCTGAACAGACGCCTCTCTCTGCTCTCGTCTTTGCTCAGTTCGTCAAGGAGGCCGGTTTCCCTCCTGGCGTTCTCAACATCATCTCCGGTTTCGGCAGAATTGCTGGTGCCGCCATGGCCTCCCACATGGACATTGACAAGGTTGCCTTCACCGGCTCTACCATGGTCGGCCGCCAAATCATGAAGGCTGCCGCCGAGTCCAACCTGAAGAAGGTTACCCTCGAGCTTGGTGGCAAGTCCCCCAACATTATCTTCAACGACGCCGATATCGACCAGGCCATTGATTGGGTCAACTTCGGTATCTACTTCAACCACGGCCAGACCTGCTGCGCTGGTTCTCGTGTATACGTCCAGGAGGGTATCTATGACAAGTTTGTGGCGGCCTTCAAGCAGCGCGCCCAGCAGAACAAGGTCGGCGACCCCTTCCACGACGAGACCTTCCAGGGCCCCCAGGTCAGCCAGCTCCAGTACGACCGCATCATGGGTTACATCAAGGCCGGTAAGGAGGAGGGTGCTACCGTCGAGACTGGTGGTGAGCGCCACGGTGACAAGGGCTACTTCATCCAGCCCACCATTTTCACCAACGTCCGTCACGACATGAAGATCATGAAGGAGGAAATTTTCGGCCCCGTCTGCGCCGTCGCCAAGTTCTCCACCGAGGAGGAGGTTATCAAGCTCGGCAACGACTCCAACTACGGCCTTGCTGCTGCCGTCCACACCAAGGACCTCAACACTGCCATCCGCGTCAGCAACCACCTTAGGGCTGGTACCGTCTGGGTCAACA Nomuraea_atypicola ATTGGTGTCTGTGGTCAGATTATTCCCTGGAACTTCCCTCTCCTCATGCTGTCCTGGAAGATCGGCCCTGCCCTGGCCACCGGCAACACCATTGTCATGAAGACCGCTGAGCAGACCCCCCTCTCCGCTCTCGTCTTCGCTCAGTTTGTCAAGGAGGCCGGGTTCCCCGCTGGTGTCTTCAACCTCATCTCCGGCTTCGGCAAGACTGCCGGCGCTGCTATCTCTTCCCACATGGACATTGATAAGGTCGCCTTCACTGGTTCGACCCTCGTCGGCCGCACCATCCTCAAGGCTGCCGCTTCTTCCAACCTCAAGAAGGTCACCCTCGAGCTCGGCGGCAAGTCCCCCAACATTGTCTTCAACGACGCCGACATCGAGGCCGCCATCTCGTGGGTCAACTTTGGCATCTACTTCAACCACGGCCAGTGCTGCTGTGCCGGCTCCCGCATCTTCGTTCAGGAGGGCATCTACGACAAGTTCCTCGAGGCTTTCAAGAAGCGCGCCGCTGCCAACGCCGTCGGTGACCCCTTTGACCCCAAGACCTTCCAGGGTCCTCAGGTCAGCCAGCTCCAGTATGACCGCATCATGAGCTACATCCAGTCCGGCAAGGAGGAGGGTGCCACCGTCGAGATCGGCGGTGAGCGCCACGGCGACAAGGGCTACTTCATCAAGCCCACCATCTTCTCCAACGTCCGCTCCGATATGAAGATCATGCAGGAGGAGATCTTCGGCCCCGTCTGCTCAATCTCCAAGTTCTCCACCGAGGAGGAGGCTATCAAGCTCGGCAACGAGACCACCTACGGCCTCGCCGCTGCCATCCACACCAAGGACCTCAACACCAGCATCCGCGTCAGCAACGCCCTCAAGGCCGGTACCGTCTGGGTCAGAC Parepichloe_cinerea ATTGGTGTTTGCGGTCAAATCATCCCGTGGAATTTCCCTCTTTTAATGCTTGCATGGAAGATTGGTCCTGCTTTGGCAACTGGCAACACCATTGTGATGAAGACTGCTGAGCAGATGCCACTCTCTGCCCTTGTATTTGCTCAATTTTTCAAGGAGGCCGGCTTCCCTCCTGGTGTTTTTAACCTTCTCTCTGGTTTCGGCAAGATTGCTGGCGCAGCCATAGCCTCCCACATGGATGTTGACAAAATTGCCTTTACTGGCTCTACTATCGTCGGCCGCACTATCATGAAGGCTGCTGCCTCTTCCAACTTGAAGAAGGTCACTCTTGAGCTCGGCGGCAAGTCGCCCAATATTGTCTTTAACGACGCCGACATTGAGCAGGCAATTTCATGGGTCAACTTTGGCATCTACTTCAACCACGGCCAGTGCTGCTGTGCTGGATCCCGCATCTTCGTCCAAGAGGGCATTTACGACAAGTTCCTCGAGGCTTTCAAGAAGCGTGCTCAGCAGAACAAAGTGGGCGACCCCTTCGACAAGGATACTTCCCAAGGCCCTCAGGTCAGCCAGCTTCAGTACGATCGCATCATGAGCTACATCAAGTCTGGAAAGGAAGAAGGTGCCATCGTTGAGACTGGTGGTGAGCGTCACGGTGACAAGGGGTACTTTATCCAGCCCACCGTCTTCAGCAATGTCCACCATGACATGAAGATCATGCAAGAAGAAGTTTTCGGCCCCGTCTGCTCCATTTCCAAGTTCAAGGATGAGGCGGACGCTATCAAGCTGGGCAACCAGACCAACTATGGCTTGGCTGCTGCCATCCACACCAAAGACCTTGCAACCAGCATTCGTGTCAGCAACGCCTTGAAGGCTGGCACTGTCTGGGTCAACT Ustilaginoidea_virens_China CTTGGTGTTTGCGGCCAAATCATTCCCTGGAACTTCCCCCTCCTCATGCTTGCCTGGAAGGTTGGTCCCGCCCTGGCCACGGGCAACACCATCGTCATGAAGACTGCGGAGCAGACGCCGCTCTCGGCTCTGGTCTTTGCCACCCTGGTCAAGGAAGCCGGCTTCCCTGCCGGAGTCTTCAACCTGCTGTCCGGTTTCGGCAGAGTCGCCGGCGCCGCCATCGCCTCCCACATGGACGTTGACAAGATTGCCTTTACCGGCTCCACCCTTGTCGGGCGCACCATCATGAAGGCTGCCGCGTCCTCCAACCTGAAAAAGGTGACCCTGGAGCTGGGCGGCAAGTCGCCCAACATTGTCTTCAACGACGCCGACATCGAGCAGGCCATCTCGTGGGTCAACTTTGGCATCTACTTCAACCACGGCCAGTGCTCCTGCGCCGGCTCCCGCATCTTTGTCCAGGAGGGCATCTACGACAAGTTCCTCGAGGCCTTCAAGAAGCGCGCCCTGCAGAACAAGGTCGGCGACCCGTTCGCCCAGGACACCTTCCAGGGGCCCCAGATCAGCCAGGTGCAGTACGACCGCATCATGGGCTACATCAAGTCCGGCAAGGAGGAGGGCGCCACGGTCGAAGTCGGCGGCGGGCGCCACGGCGACAAGGGCTACTTTATCCAGCCCACCGTCTTCTCCAACGTGCGCCCAGACATGAAGATTATGCAGGAGGAGATTTTCGGCCCCGTCTGCGCCATTGCCAAGTTCAAGGACGAGGCCGAGGTCATCAAGCTGGGCAACCAGTCAAACTACGGCCTCGCGGCCGCCATCCACACCAAAGACCTCAACACGAGCATTCGCGTGAGCCGCGCCCTAAAGGCCGGGACAGTCTGGGTCAACT Ustilaginoidea_virens_Japan ATTGGTGTTTGCGGCCAAATCATTCCCTGGAACTTCCCCCTCCTCATGCTTGCCTGGAAGGTTGGTCCCGCCCTGGCCACGGGCAACACCATCGTCATGAAGACTGCGGAGCAGACGCCGCTCTCGGCTCTGGTCTTTGCCACCCTGGTCAAGGAAGCCGGCTTCCCTGCCGGAGTCTTCAACCTGCTGTCCGGTTTCGGCAGAGTCGCCGGCGCCGCCATCGCCTCCCACATGGACGTTGACAAGATTGCCTTTACCGGCTCCACCCTTGTCGGGCGCACCATCATGAAGGCTGCCGCGTCCTCCAACCTGAAAAAGGTGACCCTGGAGCTGGGCGGCAAGTCGCCCAACATTGTCTTCAACGACGCCGACATCGAGCAGGCCATCTCGTGGGTCAACTTTGGCATCTACTTCAACCACGGCCAGTGCTACTGCGCCGGCTCCCGCATCTTTGTCCAGGAGGGCATCTACGACAAGTTCCTCGAGGCCTTCAAGAAGCGCGCCCTGCAGAACAAGGTCGGCGACCCGTTCGCCCAGGACACCTTCCAGGGGCCCCAGATCAGCCAGGTGCAGTACGACCGCATCATGGGCTACATCAAGTCCGGCAAGGAGGAGGGCGCCACGGTCGAAGTCGGCGGCGGGCGCCACGGCGACAAGGGCTACTTTATCCAGCCCACCGTCTTCTCCAACGTGCGCCCAGACATGAAGATTATGCAGGAGGAGATTTTCGGCCCCGTCTGCGCCATTGCCAAGTTCAAGGACGAGGCCGAGGTCATCAAGCTGGGCAACCAGTCAAACTACGGCCTCGCGGCCGCCATCCACACCAAAGACCTCAACACGAGCATTCGCGTGAGCCGCGCCCTAAAGGCCGGGACAGTCTGGGTCAACT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'ALDH1-1 Exon-3') = N: 1-889; CODONPOSSET CodonPositions (CHARACTERS = 'ALDH1-1 Exon-3') = N: 1-889; END; [ The following blocks are output data for analysis step 3936 ] BEGIN TREES; TITLE Tb8708; LINK TAXA = TaxaForAnalysisStep3936; TREE Fig._4 = [&R] (((((Claviceps_purpurea_China,Claviceps_purpurea_Japan),(Aciculodporium_take_1,Aciculodporium_take_2)),(Epichloe_typhina,Neotyphodium)),(((Ephelis_japonica1,Ephelis_japonica4),Parepichloe_cinerea),(Heteroepichloe_sasae,Heteroepichloe_bambusae))),((Ustilaginoidea_virens_China,Ustilaginoidea_virens_Japan),(((Cordyceps_ophioglossoides,Cordyceps_paradoxa),Cordyceps_heteropoda),(((Cordyceps_militaris1,Cordyceps_militaris2),Nomuraea_atypicola),(Neurospora_crassa1,Gibberella_zeae_2))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2898] END;