#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on August 25, 2026; 14:43 GMT TreeBASE (cc) 1994-2008 Study reference: Hines H. 2008. Historical biogeography, divergence times, and diversification patterns of bumble bees (Hymenoptera: Apidae: Bombus). Systematic Biology, 57(1): 58-75. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1927] [ The following blocks are input data for analysis step 3939 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3939; DIMENSIONS NTAX=23; TAXLABELS Apis_dorsata Bombus_appositus Bombus_auricomus Bombus_bohemicus Bombus_breviceps Bombus_caliginosus Bombus_confusus Bombus_consobrinus Bombus_dahlbomii Bombus_diversus Bombus_lapidarius Bombus_mendax Bombus_opifex Bombus_rubicundus Bombus_soroeensis Bombus_sporadicus Bombus_veteranus Eulaema_boliviensis Geniotrigona_thoracica Heterotrigona_itama Hypotrigona_gribodoi Plebeia_frontalis Trigona_amazonensis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2937] TITLE reduced_PEPCK; LINK TAXA = TaxaForAnalysisStep3939; DIMENSIONS NCHAR=926; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Apis_dorsata TGTATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA---TTATATATACTT-CTATAAAAAT--TTA{GT}TTTCAAC----A-TTGGCGTTCGCAAGTATATCAGTGTTTTAAGATTCTACATTAGTTATCTTTTATAGATATTGGCTATCACAAATCCAAAAGGTAAAAAGCGTTATATTACTGCTGCATTCCCTAGCGCGTGTGGCAAGACCAATCTGGCCATGATGAAGCCGACATTACCAGGATACAAAATCGAATGCGTAGGTGATGATATCGCTTGGATGAAATTCGATAAGGAAGGTAGACTTCGTGCCATAAATCCAGAATATGGATTCTTTGGTGTTGCACCTGGAACTAGCTTCGCCACTAATCCTAACGCCATGAAAACTATTTTTAAAAATACTGTCTTCACCAATGTAGCTTCCACTAGTGATGGTGGAATCTTTTGGGAAGGATTAGAGAAAGAAGTTAGTGATGATATTGAAGTAAGAGTT{GT}GTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Bombus_appositus TACATGTAATATGTTGAAACCTTTAAAGGCAATTGTATCAAAGTTTAATTTTATAGAGATTACTATCATATAGATTAAGAACAATTATCTCAAATACTAAGCTTCGTTTTTAATATAAATTAAAAGCAATAGTTTTAAATACTAAATTGAT-----------TAAAGGCAATTTTGTATATGTCTTGAACATTAAGACTCACTTTCAATATAGATTAAAGACAATTGTCTTCAATATCAGAACCTACACTTTAAATAAAAATAAAAATTTTTTGTTTTTAAAATATTAAAGCAGTGACAACCTCGCTATTACTCTTATAAACAGTTTCAATCG-------------------TTACTTGGCACTTGCAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTATAAAGTCGAATGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGCGTGGCACCCGGAACCAATGGCGCTACCAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTAGCCGCAACCAGCGACGGTGGAGTCTTCTGGGAGGGATTAGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAATTCATTATTACGCATGAAAGTATTTAAAAAATCCTTATCATTAAACTGCGAATGTTTTTTCTATTTATAGGAAATTTAAAAACTCAACGTTTTCTAAAACTTTCCTAAGTAAACATATTTGTATAGATCACCGATTGGCGAGGCAAAAAGTGGACCAGA Bombus_auricomus TGCATGTAACATGTTGAAACCTTTAAAGGCAATTATATGAAAGTTTAATTTTATAGATATCACTATCATATAGATTAAGAACAATTATCTCAAATACTAAGCTTTGTTCTTAATATAAATTAAAAACAACTGTTTTAAACACCAAATTGATATAATATAGATTAAAGGCAATTTTGTATATGTCTTGAACATCAGGA{AC}TCACTTTCAATATAGATTAAAGACAATTGTCTTAAATATCAAAACCTACACTTTAAATAAAAATAAGAA---TTAATTTTTAAGATATTAAAACGGTGACAACTTCACTATTACTCTTATGAACAGTTTCAATCGATACCACCATTTTCAATCGTTACTTGGCACTTGCAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGATACAAAGTGGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGTGTGGCACCCGGAACCAATAGCGCTACCAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGCGATGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAGTTCATTATTACGCATGAAAGTATTTCAAAAATCATTATCGTTAAATTGAAAATGTTTTTTCTATTTATAAGAAATTTAAAAACTCAAAATTTCTTAAAAATTTCCTAAGTAAACACATTTGTATAGATCACCGATTGGCGAGGCAAAAAGTGGACCAGA Bombus_bohemicus TGCATGTAATATGTTGAAACCTTTAAAGGCAATTGTATCAAACTTTAATTTTATACAGATCACTATCTTATAGATTTAGAACAATTATCTTAAATGCTAAGCCTCGTTTTCAATATAAATTAAAAGCAATCGTTTTAAACGCTAAATTCATACAATATAGATTAAAGGCAATTTCGTGTATATCTTGAACATCGAGACCCACT-------------------------------------------CATTTTAAATAAAAATAAAAATGTCTAGTTTTTAAGATATCAAAGCAGTGACAATATCACTATTACTCTTATAAACAGTTTTAATCG-------------------TTACTTGGCACTTGTAAGTACATTGGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTATAAAGTCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCCATAAATCCAGAAAATGGATTCTTCGGTGTGGCACCCGGAACCAATGGCGCTACGAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGTGACGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAATTCATTATTACGCGTGATAGTATTTAAAAAATCCTTATCATTAAACTGCGAATGTTTTTTCTATTTATAGGAAATTTAAAAACTCAACATTTCCTAAAAGTTTCCTAAGTAAACATATTTGTATAGATCACCGATTGGCGAGGCAAAAAGTGGACCAGA Bombus_breviceps TGCATGTAATATGTTGAAACCTTTAAAGGCATTTGTATCAAAGTTTAATTTTATAGAGATTACTATCATACAGATTAAGAACAATTATCTCAAATACTAAGCTTCGTTTTTAATATAAATTAAAAGCAATTGTTTTAAACACTAAATTGATGTAATATAGATTAAAGGTAATTTTGTGTATGTCTTGAACATCAAGA----TTCACAATATAGATTAAAGACAATTGTCATAAATATCAAAACCTACGCTTTAAATAAAAATCAAAATTTTTAGTTTTTAAGATATCAAAGCAGTGACAACTTCACTATTATTCTTATAAACAGTTTCAATCG-------------------TTACTTGGCACTTGCAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAACCGACGTTACCAGGGTACAAAGTCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGCGTGGCACCCGGAACCAATAGCGCTACCAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGCGACGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAATTCATTATTACGCATGAAAGTATTTAAAAAATCCTTATCATTAAACTGCGGACGTTTTTTCTATTTATAGGAAATTTAAAAACTCAACATTTCTTAAAACTTTCCTAAGTAAACATATTTGTATAGATCACCGACTGGCGAAGCAAAAAGTGGACCAAA Bombus_caliginosus TGCATGTAATATGTTGAGACCTTTAAAGGCAATTGTATCAAAGTTTAATTTCACAGAGATTACTATCATATAGATTAAGAACAATTATCTCAAATACTAAGCTTCGTTTCTAATATAAATTAAAAGCAATTGTTTTAAACACTAAATTGATATAATATAGATTAAAGTCAATTTTGTGTATGTCTTAAATATCAAGA----CTCACAATGTAGATTAAAGACAATTGTCATAAATATCAAAACCTACACTTTAAATAAAAGTAAAAATTTTTAGTTTTTAAAATATCAAAGCAGTGACAACTTCACTATTACTCTTATAATCAATTTCAATCG-------------------TTACTTGGCATTTGCAAGTACATTAGTCGCTTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTACAAAATCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCGGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGCGTGGCACCCGGAACCAATGGCGCTACCAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGCGACGGAGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACATTGAAGTAGGAATTCATTATTACGCATGAAAGTATTTAAAAAATCCTTATCATTAAACTGCGGATGTTTT-TCTATTTATAGGAAATTTAAAAACTCAACATTTCCTAAAACTTTCCTAAGTAAACATATTTGTATAGATCACCGATTGGCGAGGCAAAAAGTGGACCAGA Bombus_confusus TGCATGTAACATGTTGAAACCTTTAAAGGCAATTGTATGAAAGTTTAATTTTGTAGATATTACTATCATATACATTGAGAACAATTATCTCAAATACTAAGCTTTGTTTTTAATATAAATTAAAAGCAACTATGTTAAACACCAAATTGATATCATATAGATTAAAGGCAATTTTTTGTATGTCTTGAACATCAAGACTCACTTTCAATATAAATTAAAGACAATTGTCTTAAATATCAAAACCTACACTTTAAATAAAAATAAGAATTTTTACTTTTTAAGACATTAAAACAGTGACAACTTCACTATTACTCTTATGAACAGTTTCAATCGGTACCACCATTTTCAATCGTTACTTGGCACTTGCGA---CATTAGTCTCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTACAAAGTCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGCGTGGCACCCGGAACCAATAGCGCTACCAACCCTAATGCTATGAAAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGCGACGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAGTTCATTATTACGCATGAAAGTATTTAAAAAATCATTATCATTAAATTGAAAATGTTTTTTCTATTTATAAGAAATTTAAAAACTCAAAATTTCCTAAAAGTTTCCTAAGTAAACACGTTTGTATAGATCACCGATTGGCGAGGCAAAAAGTGGATCAGG Bombus_consobrinus TGCATGTAATATGTTGAAACCTTTAAAGGCAATAGTATCAAAGTTTAATTTTATGGAGATTACTATCATATAGATTAAGAACAATTATCTCAAATACTAAGCTTCGTTTTTAATATAAATTAAAAGCAATTGTTTTAAACACTAAATTGATATAATATAGATTAAAGGCAATTTTGTGTATGTCTTGAACATCAAGACTCACTTTCAATATAGATTAAAGACAATAGTCTTAAATAACAAAACCTACACTTTAAATAAAAATAAAAATTTTTAGTTTTTAAGATATCAAAGCATTGACAACCTCACTATTACTCTTATAAACAATTTCAATCG-------------------TTACTTGGCACTTGCAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTACAAAGTCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAAGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGTGTGGCACCCGGAACCAATTGCGCTACGAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGCGACGGTGGAGTCTTCTGGGAGGGATTGGAAAACGAAATCAGCGATGACGTTGAAGTAGGAATTCATTATTACGCATGAAAGTATTTAAAAAATCCTTATCATTAAACTGCGAATGTTTTTTCTATTTATAGGAAATTTAAAAACTCAACATTTCCTAAAACTTTTCTAAGTAAACATATTTGTATAGATCACCGATTGGCGAGGCAAAAAGTGGACCAGA Bombus_dahlbomii TGCATGTAATATGTTGAAACCTTTAAAGGCAATTGTATCAAAGTTGAATTTTATAGAGATTACTATCATATAGATTAAGAACAATTATCTTAAATACTAAGCTTCGTTTTTAACATAAATTAAAAGATATTGTTTTAAACACTAAATTGATATAATATAGATTAAAGGCAATTTTGTGTGTGTCTTGAACATCAAGACCCA{CT}TCTCAATATAGATTAAAGATAATTGTCTTAAATATCAAAACCTACACTTTAAATAAAAATAAAAATTTTTAGTTTTTAAGATATCAAAGCAGTGACAATTTCACTATTACTCTTATAAACAGTTTCAATCG-------------------TTACTTGGCACTTACAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAAACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTATAAAGTCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGCGTGGCACCCGGAACCAATGGTGCTACGAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGTGACGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAATTCATTATTAGGCATGAAAGTATTTAAAAAATTCTTATCACCAAACTACGAATGTTTTTTCTATTTATAGGAAATGTAAAAACTCAACATTTCCTAAAACTTTTCTAAGTAAATATATTTGTATAGATCACCGATTGGCGAGGCAAAAAGTGGACCAGA Bombus_diversus TGCACGTAATATGTTGAAACCTTTAAAGGCAATTGTATCAAAGTTTAATTTTATAG{AT}GATTACTATCATATAGATTAAGAACAATTATCTAAAATACTAAGCTTCGTTTTTAATATAAATTAAAAACAATTGTTTTAAACACTAAATTGATATAATATAGATTAAAGGCAATTTTGTGTATGTCTTGAACATCAAGACTCACTTTCAATATAGATTAAAGACAATAGTCTTAAATATCAAAACCTACACTTTAAATAAAAATAAAAATTTTTAGTTTTTAAGATATCAAAGCAGTGACAACTTCACTATTACTCTTATAAACTGTTTCAATCG-------------------TTACTTGGCATTTGCAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTACAAAGTCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTT{CT}GGCGTGGCACCCGGAACTAATTGCACTACGAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGCGATGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAATTCATTATTACGCATGAAAGTATTTAAAAAATCCTTATCATTAAACTGCGAATATTTTTTCTATTTATAGGAAATTTAAAGACTCAACATTTCTTAAAACTTTTCTAAGTAAACATATTTGTATAGATCACCGATTGGCGAGGCAAAAAGTGGACCAGA Bombus_lapidarius TGTATGTAATATGTTGAAACCTTTAAAGGCAATTGTATCAAAGTTTAATTTTATAGAGATTACTATCATATAGATTAAGAACAATTATCTCAAATACTAAGCTTCGTTTTTAATATAAATTAAAAGCAATTGTTTTAAACACTAAATTGATATAATATAG-TTAAAAGCAATTTTGTGTATGTCTTGAACATCAAGA----CTCACAATATAGATTAAAGACAATTGTCATAAATATCAAAACCTACACTTTAAATAAAACTAAAAATTTGTAGTTTTTAAGATATCAAAGCAGTGAAAACTTCACTATTATTCTTATAAACAGTTTCAATCG-------------------TTACTTGGCACTTGCAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTACAAAGTCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGCGTGGCACCCGGAACCAATGGCGCTACCAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCACAACCAGCGACGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAATTCATTATTACGCATGAAAGTATTTAAAAAATCCTTATCATTAAACTGCAGATGTTTTTTCTATTTATAGGAAATTTAAAAACTCAACATTTCCTAAAACTTTCCTAAGTAAACATATTTGTATAGATCACCGACTGGCGGGGCAAAAAGTGGACCAGA Bombus_mendax ATCGTGTAACATGTTTGAACTTTTAGAGGCAATTGTATCAATGTTTAATTTTATAGAGATCGCCATTATATAGATTAAGAACGATTATCTCAAATACTAAGCTTCATTTTTAATATAAATTAAAAGCAATTGTTTTGAACGCCAAATTAATACGATGTAGATTAAAGGCAGTTGTGTCTATGTTTTGAACATCAAGACTCACTTTCGATATAGATTAAAGACAATTGTCTTAAATATTAAAACCTAC{AG}CTTTAAATAAAAATAAAATTTGTTAATTTCTAAGATATCAAAGCAGTGACAACTTCGCTATTACTCTTATAAACAATTTCAATCGATACCGTCATTTTCAATCGTTACTTGGCACTTGCGAG{GT}ACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACCGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTACAAAGTCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGATGAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGG{CT}GTGGCACCCGGAACCAATGGCGCTACCAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACTAATGTGGCCGCAACCAGCGACGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAGTTCGTTATTACGCGTGAAAGTATTTAAAAAATCATTATCATTAAACTGCGAATGTTTT-TGGGTTTGTAGGAAATTTAAAAACTCAAAATTTCCCAAAAATTTCCTAAGTAAACGCATTTGTTTAGATCACCGATTGGCGAGGCAAAAAATGGACCAGA Bombus_opifex TGCATGTAATATGTTGAAACCTTTAAAGACAATTGTATCAAAGTTTAATTTTATAGAGATTACTATCATATAGATTAAGAACAATTATCTTAAATACTAAGCTTCGTTTTTAATATAAATTAAAAGCAATTGTTTTAAACACTAAATTGATATAATATAGATTAAAGGCAATTTTGTGTATGTCTTGAACATCAAGACCCACTTTCAATATAGATTAAAGATAATTGTCTTAAATATCAAAACCTACACTTTAAATAAAAATAAATTTTTTTAGTCTTTAAGATATTAAGACAGTGACAACTTCACTATTACTCTTATAAACTGTTTCAATCG-------------------TTACTTGGCACTTACAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACCGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTATAAAGTCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGCGTAGCACCCGGAACCAATAGCGCTACGAACCCTAATGCTATGAGAACTATCTTCAAAAACACTATCTTCACCAATGTGGCCGCAACCAGTGACGGTGGTGTCTTCTGGGAGGGATTGGAAAAAGAAATCGGCGATGACGTTGAAGTAGGAATTCATTATTACGCATGAAAGTATTTAAAAAATCCGTATCACCAAACTGCGAATGTTTTTTCTATTTATAGGAAATTTAAAAACTCAATATTTCGTAAAACTTTCCTAAGTAAACATATTTGTATAGATCACCGATTGGCGAGGCAAAAAGTGGACCAGA Bombus_rubicundus TGCATGTAATATGTTGAAACCTTTAAAGGCAATTGTATCAAAGTTTAATTTTATAGAGATTACTATCATATAGATTAAGAACAATTATCTCAAATACTAAGCTTCGTTTTTAATATAAATTATAAGCAATTGATTTAAAAACTAAATTGATATAATATAGATTAAAGGCAATTTTGTGTATGTTTTGAACATCATTA----CTCACAATATAGATTAAAGACAATTGTCATAGATATCAAAACCTGCACTTTAAATAAAAATAAAAATTTTTAGTTCTTAAGATATCAAAGCAGTGACAACTTCACTATTATTCTTATAAACAGTTTCAATCG-------------------TTAATTGGTACTTGCAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTACAAAGTCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGCGTGGCACCCGGAACCAATAGCGCTACCAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGCGACGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAATTCATTATTACGCATGAAAGTATTTAAAAAATCCTTATCATTAAACTGCGGATGTTTTTTCTATTTATAGGAAATTTAAAAACTCAACATTTCCTAAAACTTTCCTAAGTAAACATATTTGTATAGATCACCGACTGGCGAGGCAAAAAGTGGACCAGA Bombus_soroeensis TGCATGTAATCTGTTGTAACCTTTAAAGGCAATTGTATCAAAGTTTAATTTTATAGAGATTGCTATCATATAAACT-----------------ATATTAAGCTTCGTTTTTAATATAAATTAAAAACAATTATTTTAAACACTAAATTGATATAATATAAATTAAAGGCAATTTTGTGTATATCTTGAACATCAAGATTCACTTTCAATATAGATTAAAGACAATTGCCTTAAATATCAAAACCTACACTTTAAATATTAATAAAAATATTTAGTTTTTAAGATATCAAAACAGTAACAACTTCACTATTACTCTTATAAACAGTTTCAATCG-------------------TTACTTGGCACTTGCAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTACAAAGTCGAGTGCGTGGGAGATGATATTACCTGGATGAAATTCGACCAGGAAGGCAGACTTCGTGCTATAAATCCAGAAAATGGATTCTTCGGCGTGGCACCCGGAACCAATAGCGCTACCAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGCGACGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAATTCATTATTATGCATGAAAGTATTTAAAAAATCCTTATCATTAAACTGCGAATGTTTTTTCTATTTATAGAAAATTTAAAAACTCAACATTCCTTAAAAATTTCCTAAGTAAACATATTTGTATAGATCACCGATTGGCGAGGCAAAAAGTGGACCAGA Bombus_sporadicus TGCATGTAATATGTTGAAACCTTTAAAGGCAATTGTATCAAAGTTTAATTTTATAAAGATTACTATCATATAGATTAAGAACAATTATCTCAAATA{CT}TAAGCTTCGTTTTTAATATAAATTAAAAGCAATTGTTTTAAACACTAAATTGATATAATATAGATTAAAGACAA-----------------------------------------------------TTGTCATAAATATCAAAACCTACACTTTAAATAAAAATAAAAATTTTTAGTTTTTAAGATATCAAAGCAATAACAACTTCATTATTACTCTTATAAACAGTTTCAATCG-------------------TTACTTGGCATTTGCAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAACCGACATTACCAGGGTACAAAGTCGAGTGCGTGGGAGATGATATCACTTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGCGTGGCACCCGGAACCAATGGCGCTACCAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGCGACGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGACGACGTTGAAGTAGGGATTCATTATTACGCATGAAAGTATTTAAAAAATCCTTATCATTAAACTGCGAATGTTTTTTCTATTTATAGGAAATTTTAAAACTCAACATTTCCTAAAACTTTCCTAAGTAAACATATTTGTGTAGATCACCGATTGGCGAGGCAAAAAGTGGACCAGA Bombus_veteranus TGCATGTAATATGTTGAAACCTTTAAAGGCAATTGTATCAAAGTTTAATTTTATAGAGATTACTATCATATAGATTAAGAACAATTATCTTAAATACTAAGCTTCGTTTTTAATATAAATTAAAAGCAATTGTTTTAAACACTAAATTGATATAATATAGATTAAAGGCAATTTTCTGTATGTCTTGAACATCAAGACCCACTTTCAATATAGATTAAAGATAATTATCTTAAATATCAAAA----CACTTTAAATAAAAATAAA------------------------------------------------------AACAGTTTCAATCG-------------------TTACTTGGCACTTACAAGTACATTAGTCGCCTAAGATTCTGTATCAGTTACCTTTTGTAGATACTGGCTATCACAAATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAAACCAACCTAGCCATGATGCAGCCGACGTTACCAGGGTATAAAGTCGAGTGCGTGGGAGATGATATCACCTGGATGAAATTCGACCAGGAAGGCAGACTCCGTGCTATAAATCCAGAAAATGGATTCTTCGGCGTGGCACCCGGAACCAATGGCGCTACGAACCCTAATGCTATGAGAACTATCTTCAAGAACACTATCTTCACCAATGTGGCCGCAACCAGTGACGGTGGAGTCTTCTGGGAGGGATTGGAAAAAGAAATCAGCGATGACGTTGAAGTAGGAATTCATTATTACATATGAAAGTATTTAAAAAGTCCTTATTACCAAACTGCGAATGTTTTTTCTATTTATAGGAAATTTAAAAACTCAACATTTCCTAAAACTTTCCTAAGTAAATATATTTGTATAGATCACCGATTGGCGAGGCAAAAAGTGGACCAGA Eulaema_boliviensis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGATTACCATAAATATCAAGATTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAGTTCAAAGCAATGTAAGTTACACTATTA-CCT{CG}GTGTACACTTTCCATCAATTCCACTATTTTCACTGGTTACTTGGCACTCGCGAACACGTCAATCAGCTGGGATCCTGTATCAGTTACCTTTTGTAGATACTGGCAATCACAAATCCAAAAGGTAGAAAGCGTTACATTGCTGCAGCGTTTCCCAGTGCTTGCGGCAAGACCAACCTAGCCATGATGCAGCCGACATTACCAGGATACAAGATCGAATGCGTAGGTGACGACATAGCTTGGATGAGATTCGACGAGGAAGGCCGGCTTCGCGCCATAAACCCAGAAAATGGATTCTTTGGTGTAGCCCCTGGAACCAGCTACGCCACTAACCCCAATGCCATGAAAACTATCTTCAAGGACACCATCTTCACCAATGTGGCAGCTACTAATGATGGCGGAGTCTTTTGGGAGGGATTGGAAAAAGAAATTAGTGAGAATGTTGAAGTAAGAATTTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Geniotrigona_thoracica CGTATGTAACAT---------------------TATGTAAAAGTTTAATTTCA-AGA------------------------TGATTGTCTTAGATATCAAAATTTACTTTTATAGATATTTCAAA-CAA--GTTTT----ACTA--TTAATATA-CGTAGATTAAAGGTAAC--------TGTCCTAGATAATAAAATTTACTTTTAA------TTAAAGGCAACTATTTTAAGTATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTGTCAAAGCAATGAAAATTTCACTATTACTCGTA-GAGTAGTTTCAATAAATTC--TTATTTTTAATGGTTATTTAGCATTTGGAAACGCGTCAGTCGCCTAAGATTCTGTATCAGTTATCTTTTCTAGATACTGGCTATCACAGATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCATGCGGCAAGACAAACCTAGCCATGCTGAAGCCGACGTTACCAGGGTACAAGATCGAGTGTGTAGGAGATGACATCGCTTGGATGAGATTCGATCGAGAAGGCAGACTTCGTGCCATAAATCCAGAAAATGGTTTTTTCGGCGTAGCTCCCGGAACCAATAGTATTACCAATCCTAATGCCATGAAAACTATCTTTAAGAATACTATTTTCACCAACGTGGCTGCTACCAGCGATGGTGGAGTCTTCTGGGAAGGAATGGAGAAAGAAATCAGCGATGATGTTGAAGTAGGAGTTCATTAT--CGC-------------------TGTTATTATTAA-CTGCAGATGTTTC-TGTACTTATAGGGAATTT--------------TCAATTGCATTTTCTCAGTAATCATATTTGTATAGATCACCGATTGGCGAGGCAAGAAGNNNNNNNNN Heterotrigona_itama GATATGTAACAT---------------------TATGCAAAAGTTTAATTTCA-AGA------------------------TGATTGTCTTAGATATCAAAATTTACTTTTATAGATATTTCAAAACAA--GTTTT----ACTA--TTAATATA-CGTAGATTAAAGGTAAC--------TGTCTTAGATAATAAAATTTACTTTTAATATAGATTAAAGGCAACTATTTTAAGTATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAG{CT}AGTGGAAGCAATGAAAATTTCACTGTTACTCGTA-GAGTAGTTTCAATAAATTC--T-ATTTTTAATCGTTATTTGGCATTTGGAAACGCGTCAGTCGCCTAAGATTCTGTATCAGTTATCTTTTCTAGATACTGGCTATCACAGATCCAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCATGCGGCAAGACAAACCTAGCTATGCTGAAGCCGACGTTACCAGGGTACAAGATCGAGTGTGTAGGAGATGACATCGCTTGGATGAGATTCGATCGAGAGGGCAGACTTCGTGCCATAAACCCAGAAAATGGTTTTTTCGGCGTAGCTCCCGGAACCAATAGTATTACCAATCCTAATGCCATGAAAACTATCTTTAAGAATACTATTTTCACCAACGTGGCTGCTACCAGCGATGGTGGAGTCTTCTGGGAAGGAATGGAGGAAGAAATCAG{CT}GATGATGTTGAAGTAGGAGTTCATTAT--CGC-------------------TATTATTATTAA-CTGCAGA{GT}GTTTC-TGTACTTATAGGGAATTT--------------TCAAT{AT}GCATTTTTTCAGTAATCACATTGGTATAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Hypotrigona_gribodoi NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGGTAGAAAGCGTTACATTACTGCAGCGTTCCCCAGTGCTTGCGGCAAGACAAACCTAGCCATGCTGACGCCAACGTTACCAGGGTACAAGATCGAGTGTGTAGGAGATGATATCGCGTGGATGAGATTCGATCAAGAGGGCAGACTTCGTGCCATAAACCCAGAAAATGGTTTTTTCGGCGTAGCTCCCGGAACCAATTGTATTACCAATCCTAGTGCCATGAAGACTATCTTTAAGAATACTATTTTCACCAACGTGGCTGC{GT}ACCAGCGATGGTGGAGTCTTCTGGGAGGGAATGGAGGAAGAAATCAATGAT{CG}ATGTTGAAGTAGGAGTTCATTAT--CGC----------------------TATTATTAA-CTGCGGATGTTTC-TATACTTGTAGGGAATTT--------------TTAATTGCATTTTCTCAGTAATCATATTTGTATAGATCACCGATTGGCGAGGCAAGAAGTGGACCAGA Plebeia_frontalis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCTATCACAGATCCAAAAGATAGAAAGCGTTACATTACTGCAGCATTCCCCAGTGCATGCGGCAAGACAAACCTAGCCATGCTGAAACCAACGTTACCAGGGTACAAGATCGAGTGTGTAGGAGATGATATCGCTTGGATGAGATTCGATCAAGAGGGCAAACTTCGTGCCATAAATCCAGAAAATGGTTTCTTCGGCGTAGCTCCCGGAACCAATTGTATCACCAATCCTAATGCCATGAAGACTATCTTTAAGAATACTATTTTCACCAACGTAGCTGCTACCAGCGATGGTGGAGTCTTCTGGGAGGGAATGGAGGAAGAAATCAGTGATGATGTTGAAGTAGGACTTCATTAT--CGC-------------------TATTATTATTAA-CTGCGGATGTTTC-TGTATTTATAAGGAAATTGCA-----------ATAATTGCATTTTCTAAGTAATCATATTTGTATAGATCACCGATTGGCGAGGGAAGAAATGGACCAGA Trigona_amazonensis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCTATCACAGATCCAAAAGGTAGAAAGCGTTACATTGCTGCAGCATTCCCCAGTGCTTGCGGCAAGACAAACCTAGCTATGCTGAAACCAACGTTACCAGGGTACAAGATCGAGTGCGTAGGAGATGATATCGCTTGGATGAGATTCGATCAAGAGGGCAGACTTCGTGCCATAAACCCAGAAAACGGTTTCTTCGGCGTAGCTCCCGGAACCAATTGTATCACCAATCCTAATGCCATGAAGACTATCTTTAAGAATACTATTTTCACCAACGTGGCTGCTACCAGCGATGGTGGAGTCTTCTGGGAGGGAATGGAGGAAGAAATCAGTGATG---TTAAAGTAGGACTT{CG}ATTAT--CGT-------------------TATTATTATTAA-TTGCGGATGTTTC-TATATTTATAGGGAAATTGCA-----------ATAATTGCATTTTCTAAGTAATCATATTTGTATAGATCACCGATTGGCGAGGCAAGAAATGGACCAAA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = reduced_PEPCK) = N: 1-926; CODONPOSSET CodonPositions (CHARACTERS = reduced_PEPCK) = N: 1-926; END; [ The following blocks are output data for analysis step 3939 ] BEGIN TREES; TITLE Tb8711; LINK TAXA = TaxaForAnalysisStep3939; TREE reduced_PEPCK = [&R] (((((((Bombus_caliginosus,((Bombus_rubicundus,Bombus_breviceps),Bombus_lapidarius)),Bombus_sporadicus),((((Bombus_veteranus,Bombus_dahlbomii),Bombus_opifex),Bombus_bohemicus),(Bombus_consobrinus,Bombus_diversus)),Bombus_appositus),Bombus_soroeensis),(Bombus_auricomus,Bombus_confusus),Bombus_mendax),(((Plebeia_frontalis,Trigona_amazonensis),Hypotrigona_gribodoi),(Geniotrigona_thoracica,Heterotrigona_itama))),Eulaema_boliviensis,Apis_dorsata); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2901] END;