#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on August 25, 2026; 14:43 GMT TreeBASE (cc) 1994-2008 Study reference: Hines H. 2008. Historical biogeography, divergence times, and diversification patterns of bumble bees (Hymenoptera: Apidae: Bombus). Systematic Biology, 57(1): 58-75. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1927] [ The following blocks are input data for analysis step 3940 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3940; DIMENSIONS NTAX=31; TAXLABELS Apis_dorsata Axestotrigona_ferruginea Bombus_appositus Bombus_auricomus Bombus_bohemicus Bombus_breviceps Bombus_caliginosus Bombus_confusus Bombus_consobrinus Bombus_dahlbomii Bombus_diversus Bombus_lapidarius Bombus_mendax Bombus_opifex Bombus_rubicundus Bombus_soroeensis Bombus_sporadicus Bombus_veteranus Euglossa_imperialis Eulaema_boliviensis Geniotrigona_thoracica Heterotrigona_itama Hypotrigona_gribodoi Liotrigona_mahafalya Melipona_grandis Meliponula_bocandei Odontotrigona_haematoptera Plebeia_frontalis Tetragonisca_augustula Tetragonula_fuscobalteata Trigona_amazonensis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2936] TITLE reduced_opsin; LINK TAXA = TaxaForAnalysisStep3940; DIMENSIONS NCHAR=702; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Apis_dorsata ACTCGGACCTCTTTTCTGTCAAATCTATGCGATGTTGGGCTCCTTGTTCGGATGTGGCTCCATTTGGACAATGACGATGATCGCATTCGATAGATATAATGTAATCGTGAAAGGTTTATCTGGTAAACCGCTGTCCATTAATGGAGCTCTCCTTCGTATAATAGCTATATGGTTGTTCTCTCTCTTATGGACTATTGCACCTATGTTTGGCTGGAATCGGTAATTTTTGACTTTTGATCGCGATTATA-------TA-TATTTTAAATATTTTTCATATATATT---TATTGATTAGAAATAACGAAATTCAT-ATTCTTT-CTT-AGATATGTACCTGAAGGTAATATGACCGCTTGCGGCACCGATTACTTTAACAGAGGATTATTATCTGCTTCTTATCTTGTCTGCTACAGCATTTGGGTTTACTTCGTTCCTCTGTTCCTCATCATTTATAGTTATTGGTTTATCATTAAAGCGGTAGCTGCCCATGAGAAGAATATGCGCGAACAAGCAAAAAAGATGAATGTTGCTTCTCTCCGATCATCTGAAAATCAAAATACTAGTGCCGAATGTAAATTAGCCAAAGTATG--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTATAAC---TTTAGGTTGCTCTTATGACAATCTCTTTA Axestotrigona_ferruginea ACTTGGACCTCTCTTCTGTCAAATTTACGCGATGTTGGGGTCGTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGATACAATGTAATCGTTAAAGGATTAGCCGGTAAGCCATTAAGCATTAACGGAGCTCTCCTCCGTATACTGGGCATATGGGCGTTCTCTCTGATTTGGACCATCGCGCCTATGTTAGGCTGGAATAGGTAATCCGC-----TTGATAGTGATAATG-------TCTTGATAAATCTTATTGACATTTCATTCGAAAGTTGATTACTAATAACAAAATATATGATTTTCTTCTTTAGATATGTACCAGAGGGTAACATGACCGCATGTGGTACCGATTACTTCAGCAGAGACATAGTGTCTGTTTCTTACATTATATTATACAGCATCTGGGTTTACTTCATCCCGCTGTCCCTTATTGTCGGAAGTTACTGGTACATCATCCAAGCGGTATCTGCCCATGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAATGTGGCATCTCTCCGGTCATCCGAAAATCAGAATACCAGTGCGGAGTGTAAATTGGCGAAAGTATGAATATCTAATTTGTAACGCAATGAATGCTTAATTTTTAATTCTCTTTATTTGTAACGAGAATTAAAATATTTTATAATAATTCTAGGTTGCCCTTATGACAATTTCTTTA Bombus_appositus ACTTGGGCCTCTCTTCTGTCAAATCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATAGCATTCGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGTCCATTAACGGAGCTCTCCTTCGTATACTGGGTATATGGTTGTTCTCCCTGATTTGGACTATCGCACCTATGTTCGGCTGGAATAGGTAATTCGG-----TTGATCGTGACAATA-------TTTTGATAAGTGTTATTAATATTTCATTCGAGGATTAATTACGAGTAACGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTCAGCAAAGATATAGTATCCGTCTCCTACATTCTATTATACAGCATCTGGGTTTACTTTTTCCCGCTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCTTCTCTCCGATCATCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAATGAATATTTGATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTATAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Bombus_auricomus ACTTGGGCCTCTCTTCTGTCAAATCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACAATGATTGCATTCGATAGGTATAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGACCATTAACGGAGCTCTCCTTCGTATACTGGGCATATGGTTGTTCTCCCTGATTTGGACTGTCGCACCTATGTTAGGCTGGAATAGGTAATTCGG-----TTGATCGCGATAATA-------TCTTGATAAGTGCTATTAACATTTCATTCGA-------------GTAACGAAACGT--GGTTCTCTTCCTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTGAGCAAAGATATAGTATCCGTCTCCTACATCCTGTTATACAGCATCTGGGTTTACTTCTGCCCGCTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGTGAACAAGCCAAGAAGATGAACGTAGCTTCTCTCCGATCGTCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAATGAATATTTAATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTATAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Bombus_bohemicus ACTTGGGCCTCTCTTCTGTCAGATCTATGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACAATGATTGCATTCGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGTCCATTAACGGAGCTCTCCTTCGTATACTGGGTATATGGTTGTTCTCCCTGATTTGGACTATCGCACCTATGTTCGGCTGGAATAGGTAATTTGA-----TTGATCGCGACAATA-------TTTTGATAAGTGTTATTATTATTTCATTCGAGGATTGATTACAAGTAACGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTCAGCAAAGATATAGTATCCGTTTCCTACATCCTATTATACAGCATCTGGGTTTACTTCTTCCCGCTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCTTCTCTCCGATCATCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATA--TAATAAATTTCTAATGTAATGAATATTTAATTTTAAACTTTCTTTACTTATAACAGGA-------TATTTTACAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Bombus_breviceps ACTTGGGCCTCTCTTCTGTCAAATCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGACCATTAACGGAGCTCTCCTTCGTATACTGGGCATATGGTTGTTCTCCCTGATTTGGACTATCGCACCTATGTTCGGCTGGAATAGGTAATTTTG-----TTGATCGCGATAATA-------TTTTGATAAGTGTTATTAACATTTCATTCGAGGATTGATTACGAGTAACGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTCAGCAAAGATATAGTATCCGTCTCCTACATCCTATTATACAGCATCTGGGTTTACTTCTTCCCACTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCTTCTCTTCGATCATCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGCAATGAATATTTGATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTATAATGATTCTAGGTTGCCCTTATGACCATCTCCTTA Bombus_caliginosus ACTTGGGCCTCTCTTCTGTCAAATCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGACCATTAACGGAGCTCTCCTTCGTATACTGGGGATATGGTTGTTCTCCTTGATTTGGACTATCGCACCTATGTTTGGCTGGAATAGGTAATTCGG-----TTGATCGCGATAATA-------TTTTGATAAGTGTTATTAATATTTCATTCGAGGATTGATTACGAGTAACGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTCAGCAAAGATATAGTATCCGTCTCCTACATCCTATTATACAGTATCTGGGTTTACTTCTTCCCGCTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCTTCTCTGCGATCATCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAATGAATATTTTATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTATAATGATTCTAGGTTGCCCTTATGACAATCTCTTTA Bombus_confusus ACTTGGGCCTCTCTTTTGTCAAGTCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGACCATTAACGGAGCTCTCCTTCGTATACTGGGCATATGGTTGTTCGCCCTAATTTGGACTGTCGCACCTATGATCGGTTGGAATAGGTAATTCGG-----TTGATCGCGATAATA-------TCTTGATAAGTGCTATTATCATTTCATTCGAGGATTGATTACGAGTAACGAAACGT--GATTCTCTTCCTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGTACTGATTACTTCAGCAAAGATATAGTATCCGTCTCCTACATCCTGTTATACAGCATCTGGGTTTACTTCTGCCCGCTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAAAATATGCGCGAACAAGCCAAGAAGATGAACGTAGCTTCTCTCCGATCGTCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAATGAATATTTAATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTATAATGATCCTAGGTTGCCCTTATGACAATTTCCTTA Bombus_consobrinus ACTTGGGCCTCTCTTCTGTCAAGTCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGTCCATTAACGGAGCTCTCCTTCGTATACTGGGTATATGGTTGTTCTCCCTGATTTGGACTATCGCACCTATGTTCGGCTGGAATAGGTAATTCGG-----TTGATCGTGATAATA-------TTTTGATAACTCTTATTAATATTTCATTCGAGGATTGATTACGAGTAACGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTCAGCAAAGATATAGTATCCGTCTCCTACATCCTATTGTACAGCATCTGGGTTTACTTCTTCCCGTTGTTCCTCATTATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCTTCCCTCCGATCATCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAATGAATATTTGATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTATAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Bombus_dahlbomii ACTTGGGCCTCTCTTCTGTCAGATCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGGTATAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGTCCATTAACGGAGCTCTCCTTCGTATACTGGGTATATGGTTGTTCTCCCTGATTTGGACAATCGCACCTATGTTCGGCTGGAATAGGTAATTCGG-----TTGATCGCGATAATA-------TTTTGATAAGTGTTATTAATATTTCGTTCGAAGATTGATTGCGAGTAACGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTCAGCAAAGATATAGTATCCGTCTCCTACATCCTATTATACAGCATCTGGGTTTACTTCTTCCCGCTATTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCTTCTCTCCGATCATCTGAAAATAAAAATATTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAACGAATATCTGATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTACAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Bombus_diversus ACTTGGGCCTCTCTTCTGTCAAGTCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGTCCATTAACGGAGCTCTCCTTCGTATACTGGGTATATGGTTGTTCTCCCTGATTTGGACCATCGCACCTATGTTCGGCTGGAATAGGTAATTCGA-----TTGATCGCGATAATA-------TTTTGATAACTCTTATTAATATTTCATTCGAGGATTGATTACGAGTAACGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCATGTGGCACTGATTACTTCAGCAAAGATATAGTATCCGTCTCCTACATCCTATTGTACAGCATCTGGGTTTACTTCTTCCCGCTGTTCCTCATCATTTGGAGTTACTGGTTCATTATTCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCTTCTCTCCGATCGTCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAGTGAATATTTGATTTTAAACTTTCTTTACTTATAAGGGGA-------TATTTTATAATGATTCCAGGTTGCCCTTATGACAATCTCCTTA Bombus_lapidarius ACTTGGGCCTCTCTTCTGTCAAATCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTTGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGACTATTAACGGAGCTCTCCTTCGTATACTGGGCATATGGTTGTTCTCCCTGATTTGGACTATCGCACCTATGTTCGGCTGGAATAGGTAATTTTG-----TTGATCGCGATAATA-------TTTTGATAAGTGTTATTAACATTTCATTCGAGGATCGATTACAAGTAACGAAGCTT--GATTCTCTTATTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTCAGCAAAGATATAGTATCCGTCTCCTACATCCTATTATACAGCATCTGGGTTTACTTCTTCCCACTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCTTCTCTCCGATCATCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAATGAATATTTGATTTTAAACTTTCCTTACTTATAACGGGA-------TATTTTATAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Bombus_mendax ACTTGGGCCTCTCTTCTGTCAAATATACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGCAAGCCATTGACCATTAACGGAGCTCTCCTCCGTATACTGGGAATATGGTCGTTCTCCTTGATTTGGACTGTCGCACCTATGATCGGCTGGAATAGGTAATTCGG-----TTGATCGCGATAATG-------CCTTGATAAGTGTTATTAACATTTCATGCGAAAATTGATTACGAGTAACGAAACGT--GATTCTCTTCTTCAGATATGTACCAGAAGGTAATATGACCGCGTGTGGCACTGATTACTTCAGCAAGGATATAGTATCCGTCTCCTACATCCTATTATACAGCATCTGGGTTTACTTCATCCCGCTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCTGTAGCTGCTCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCTTCTCTTCGATCGTCCGAAAATCAAAATACCAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATACATTTTTAATGTAATGAATATTTAATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTATAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Bombus_opifex ACTTGGGCCTCTCTTCTGTCAGATCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACAATGATTGCATTCGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGTCCATTAACGGAGCTCTCCTTCGTATACTGGGTATATGGTTGTTCTCCCTGATTTGGACTATCGCACCCATGTTCGGCTGGAATAGGTAATACGG-----TTGATCGCGATAATA-------TTTTGATAAGTGTTATTAATATTTCATTCGAAGATTGATTACGAGTAACGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCGTGCGGCACTGATTACTTCAGCAAAGATATAGTATCCGTCTCCTACATCCTATTATACAGCATCTGGGTTTACTTCTTTCCGCTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGTGAACAAGCCAAAAAGATGAACGTAGCTTCTCTCCGATCATCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAATGAATATTTGATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTATAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Bombus_rubicundus ACTTGGGCCTCTCTTCTGTCAAATCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGGTACAATGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGACCATTAACGGAGCTCTCCTTCGTATACTGGGCATATGGTTGTTCTCCCTGATTTGGACTATCGCACCTATGTTCGGCTGGAATAGGTAATTTTG-----TTGATCGCGATAATA-------TTTTGATAAGTGTTATTAACATTTCATCCGACGATTGAT--CGACTT-CGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTCAGCAAAGATATAGTATCCGTTTCCTACATCCTATTATACAGCATCTGGGTTTACTTCTGTCCATTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCATCTCTCCGATCATCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAATGAATATTTGATTTTAAAATTTCTTTACTTATAACGGGA-------TATTTTATAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Bombus_soroeensis ACTTGGGCCTCTCTTCTGTCAAATCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGACCATTAACGGAGCTCTCCTTCGTATACTGGGCATATGGTTGTTCTCCCTGATTTGGACTATCGCACCTATGTTCGGCTGGAATAGGTAATTCGG-----TTGGTCGCGATAATA-------TTTTGATAAGTGTT---AATATTTCATTCGAGGATTGATTACGAGTAACGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTCAGCAAAGATATAGTATCCGTCTCCTACATCCTACTATACAGCATCTGGGTTTACTTCTTCCCGCTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAGCAAGCCAAAAAGATGAACGTAGCTTCTCTCCGATCATCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAATGAATATTTGATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTATAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Bombus_sporadicus ACTTGGGCCTCTCTTCTGTCAAGTCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGGTACAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGACCATTAACGGAGCTCTCCTTCGTATACTGGGGATATGGTTGTTCTCCCTGATTTGGACTATCGCACCTATGTTTGGCTGGAATAGGTAATTCGG-----TTGATCGCGATAATA-------TTTCGATAAGTGTTATTAACATTTCATTCGAGGATTGATTACGAGTAACGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTCAGCAAAGATATAGTATCCGTCTCCTACATCCTATTATACAGCATCTGGGTTTACTTCTTCCCGCTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCTTCTCTCCGATCATCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAATGAATATTTTATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTATAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Bombus_veteranus ACTTGGGCCTCTCTTCTGTCAGATCTACGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACAATGATTGCATTCGATAGGTATAACGTGATCGTCAAAGGTTTATCTGGTAAGCCATTGTCCATTAACGGAGCTCTCCTTCGTATACTGGGTATATGGTTGTTCTCCCTGATTTGGACTATCGCACCTATGTTCGGCTGGAATAGGTAATTCGG-----TTGATCGCGATAATA-------TTTTAATAAGTGTTATTAATATTTCATTCGAAGATTGATTACGAGTAAAGAAACTT--GATTCTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCGTGTGGCACTGATTACTTCAGCAAAGATATAGTATCTGTCTCCTACATCCTATTATACAGCATCTGGGTTTACTTCTTCCCGCTGTTCCTCATCATTTGGAGTTACTGGTTCATTATCCAGGCGGTAGCTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTAGCTTCTCTCCGATCATCTGAAAATCAAAATACTAGTGCCGAGTGTAAATTGGCAAAAGTATG--TAATAAATTTCTAATGTAATGAATATTTGATTTTAAACTTTCTTTACTTATAACGGGA-------TATTTTACAATGATTCTAGGTTGCCCTTATGACAATCTCCTTA Euglossa_imperialis ATTTGGACCTCTCTTCTGTCAAATCTATGCAATGTTGGGTTCCTTGTGCGGATGTAGCTCCATATGGACGATGACTATGATTGCATTTGATAGGTACAATGTGATCGTGAAAGGACTGTCTGGTAAACCATTATCCATCAACGGAGCTCTCATCCGTATAGTGGGCATCTGGTTATTCTCTCTGGGTTGGACCATCGCACCCGTATTAGGCTGGAATCGGTAATTCTCAACTATAATTCTC-ATAAGA-------TAGTATTATATCTATCTATC-TATCGCACGAGAATACATTAGGAATAACGAAATCTATGGTTCTTCGCTTCAGATATGTACCGGAGGGTAACATGACCGCATGTGGTACCGATTACTTTAGCAAAGATATACTGTCTGTCTCCTACATTCTATTATACAGCATCTGGGTTTACTTCTTCCCGCTGTTCCTTATCATTTGGAGTTACTGGTACATCATCCAAGCAGTCGCTGCCCACGAAAAGAACATGCGCGAACAAGCGAAAAAAATGAACGTTGCCTCTCTTCGATCATCTGAAAATCAAAATACCAGTGCTGAGTGCAAATTGGCAAAAGTATG--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAACAATTACAGGTTGCTCTTATGACCATCTCCTTA Eulaema_boliviensis ACTTGGACCTCTCTTTTGTCAAGTCTATGCAATGTTGGGCTCCTTGTTCGGATGTGGCTCCATATGGACGATGACTATGATTGCATTTGACAGGTACAATGTGATCGTGAAAGGACTATCTGGTAAACCATTATCCATCAACGGAGCTCTCATCCGTATAGTGGGCATCTGGTTGTTCTCTCTGGGTTGGACCATCGCACCAATGTTAGGCTGGAATCGGTAATTTTCGACTATAGTA-GCAATAATA-------TCCTGGTAAATCTTTTCCGGATTTTACCCGAGAATAGATTACCAATAACGAAATGTATGGTTCTCCGCTTCAGATATGTACCCGAGGGTAACATGACCGCATGCGGTACCGATTACTTCAGCAAAGATATCGTGTCTGTCTCCTACATTCTATTATACAGCATCTGGGTTTACTTCTTCCCGCTCTTCCTTATCATTTGGAGCTACTGGTACATCATCCAAGCAGTCGCTGCCCATGAGAAGAATATGCGCGAACAAGCGAAAAAAATGAACGTTGCCTCTCTTCGATCATCTGAAAATCAAAATACTAGTGCTGAGTGCAAATTGGCCAAAGTATG--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTACAATAATTATAGGTTGCTCTTATGACCATCTCTTTG Geniotrigona_thoracica NNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGATGTTGGGGTCGTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGACAGATACAATGTGATCGTTAAAGGTTTATCCGGTAGGCCATTAACCATTAACGGGGCTCTCCTCCGTATACTGGGCATATGGGCGTTCTCTCTGATTTGGACCATCGCGCCTATGTTAGGCTGGAATAGGTAATTCGC-----TTGAGCGTGACAATG-------TCTTGATAAATCTTATCGGCATTTTATTCGAAAGTTGATTACGAATAACAAAATGTATGATTCTCTTCTTTAGATATGTACCAGAGGGTAACATGACCGCATGTGGTACCGATTACTTCAGCAGAGACATAGTGTCTGTTTCTTACATTATATTATACAGCATCTGGGTTTACTTCATCCCGCTGTTCCTTATTATCGGAAGTTACTGGTATATCATCCAAGCGGTAGCTGCCCATGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAATGTGGCATCTCTCCGATCATCCGAAAATCAGAATACTAGTGCGGAGTGTAAATTGGCGAAAGTATGACTATCTAATTTGTAACGCAATGAATATTTAACTTTTAATTCTCTTTATTTGTAACGAGAATTAATATGTTTTATAATAATTCTAGGTTGCCCTTATGACAATCTCTTTA Heterotrigona_itama NNNNNNNNNNNNNNNNTGTCAAATTTACGCGATGTTGGGGTCGTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGACAGATACAATGTGATCGTTAAAGGTTTATCCGGTAGGCCATTAACCATTAACGGGGCTCTCCTCCGTATACTGGGCATATGGGCGTTCTCTCTGATTTGGACCATCGCGCCTATGTTAGGCTGGAATAGGTAATTCGC-----TTGAGCGTAACAATG-------TCTTGATAAATCTTATCGGCATTTTATTCGAAAGTCGATTACGAATAACAAAATGTGTGATTCTCTTCTTTAGATATGTACCAGAGGGTAACATGACCGCATGCGGTACCGATTACTTCAGCAGAGACATAGTGTCTGTTTCTTACATTATATTATACAGCATCTGGGTTTACTTCATCCCGCTGTTCCTTATTATCGGGAGTTACTGGTATATCATCCAAGCGGTAGCTGCCCATGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAATGTGGCATCTCTCCGATCATCCGAAAATCAGAATACTAGTGCGGAGTGTAAATTGGCGAAAGTATGACTATCTAATTTGTAACGCAATGAATATTTAACTTTTAATTCTCTTTATTTGTAACGAGAATTAAGATGTTTTATGATAATTCTAGGTTGCCCTTATGACAATCTCTTTA Hypotrigona_gribodoi ACTTGGACCTCTCTTCTGTCAAATTTACGCGATGTTGGGCTCGTTGTTCGAATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGATACAATGTGATCGTTAAAGGTTTATCCGGTAAGCCATTAACCATTAACGGAGCTCTCCTCCGTATACTGGGGATATGGGCGTTCTCTCTGATTTGGACCATCGCGCCTATGTTAGGCTGGAATAGGTAATCTGC-----TTGATCGTGACAATG-------TCTCGATAAATCTTATTGACAGTTCATTCGAAAGTTGATTACGAATAACAAAATGTATGATTCTCTTCTTCAGATATGTACCAGAGGGTAACATGACCGCATGTGGTACCGATTACTTTAGCAGAGACATAGTGTCTGTTTCTTACATTATATTATACAGCATTTGGGTTTACTTCATCCCGCTGGCTCTTATTATCGGGAGTTACTACTATATCATCGCAGCGGTAGCTGCCCATGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAATGTGGCATCTCTCCGATCATCCGAAAATCANAATACCAGTGCGGAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Liotrigona_mahafalya ACTTGGACCTCTCTTCTGTCAAATTTACGCGATGTTGGGCTCGTTGTTCGGATGTGGCTCCATATGGACGATGANTATGATTGCGTTCGATAGATACAATGTGATCGTTAAAGGTTTATCCGGTAAGCCATTGACCATTAACGGAGCTCTCCTCCGTATACTGGGCATATGGGCGTTCTCTCTGATTTGGACCATCGCGCCTATGTTAGGCTGGAACAGGTGATCCGC-----TTGATCGTGATAATG-------TCTTCACAAATCCTATTCACATTTCATTCGAAAGTTGATTACGAATAACAAAATGTACGATTCTCTTCTTCAGATACGTACCAGAGGGTAACATGACCGCATGCGGTACCGATTACTTCAGCAAAGACATAGTGTCTGTTTCTTACATTGTATTATACAGCATCTGGGTTTACTTCATCCCGCTGGCCCTTATTATCGGGAGTCACTACTATATCATCTCAGCGGTAGCTGCCCATGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTGGCATCTCTTCGATCATCCGAAAATCANAATACCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Melipona_grandis ACTTGGACCTCTCTTCTGTCAAATTTACGCGATGTTGGGCTCGTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCGTTCGATAGATACAATGTGATCGTTAAAGGTTTATCCGGGAAGCCATTAACCATTAACGGAGCTCTCCTCCGTATACTGGGCATATGGGCGTTCTCTCTGGTTTGGACGATCGCGCCTATGATAGGCTGGAACAGGTAATTCAC-----TTGATCGTAATAACGT-CTTATTATAGACAAATCTTATTGGCATTTCATTCGAAAGTTGATTACGAATAACAAAATGTATGATTCTCCTCTTTAGATATGTACCAGAGGGTAACATGACCGCGTGTGGTACCGATTACTTCAGCAGAGACATAGTGTCTGTTTCTTACATTATATTATACAGCATCTGGGTTTACTTCATCCCGCTGTTCCTTATTATCGGTAGTTACTATTACATCATTCAAGCGGTAGCTGCCCATGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAATGTGGCATCTCTTCGATCATCCGAAAATCAGAATACTAGTGCGGAGTGTAAATTGGCGAAAGTATGAACACCTAATTTGCAACGCAATGAATATTTAATTTTTAATTCTCTTTATTTGTAACGAGA-------TGTTTTATAATAATTCTAGGTTGCCCTTATGACAATCTCTTTA Meliponula_bocandei NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGGGCTCGTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGATACAATGTAATCGTTAAAGGATTAGCCGGTAAGCCATTAAGCATTAACGGAGCTCTCCTCCGTATACTGGGCATATGGGCGTTCTCTCTGATTTGGACCATCGCGCCTATGTTAGGCTGGAATAGGTAATCCGC-----TTAATCGTGATAATG-------TCTTGCTAAATTTTATTGACATTTCATTCGAAAGTTGATTACTAATAACAAAATATATGATTTTCTTTTTTAGATATGTACCAGAAGGTAACATGACCGCATGTGGTACCGATTACTTCAGCAGAGACATAGTGTCTGTTTCTTACATTATATTATACAGCATCTGGGTTTACTTCATCCCGCTGTCCCTTATTGTCGGGAGTTATTGGTATATCATCCAAGCGGTATCTGCCCATGAGAAGAACATGCGCGAACAAGCCAAAAAGATGAATGTGGCATCTCTCCGATCATCCGAAAATCAGAATACCAGTGCGGAGTGCAAATTGGCAAAAGTATGAATATCTAATTTGTAACGCAATGAATGCTTAATCTTTAATTCTCTTTATTTGTAACGAGAATTAAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Odontotrigona_haematoptera ACTTGGACCTCTCTTCTGTCAAATTTACGCGATGTTGGGGTCGTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGATACAATGTGATCGTTAAAGGTTTATCCGGTAGGCCATTAACCATTAACGGAGCTTTCCTCCGTATACTGGGCATATGGGCGTTCTCTCTGATTTGGACCATCGCGCCTATGTTAGGCTGGAATAGGTAATTCGC-----TTGAGCGTGACAATG-------TCTCGATAAATCTTATCGGCATTTTATTCGAAAGTTGATTACGAATAACAAAATGTATGATTCTCTTCTTTAGATATGTACCAGAGGGTAACATGACCGCATGTGGTACCGATTACTTCAGCAAAGACATAGTGTCTGTTTCTTACATTATATTATATAGCATCTGGGTTTACTTAATCCCGCTGTCCCTTATTATCGGAAGTTACTGGTATATCATCCAAGCGGTAGCTGCCCATGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAATGTGGCATCTCTCCGATCAACCGAAAATCAGAATACTAGCGCGGAGTGTAAATTGGCGAAAGTATGACTATCTAATTTGCAACGCAATGAATATTTAATTTTTAATTCTCTTTATCTGTAACGAGAATTAAGATGTTTNNTAATAATTCTAGGTTGCCCTTATGACAATCTCTTTA Plebeia_frontalis ACTTGGACCTCTCTTCTGTCAAATTTACGCGATGTTGGGCTCGTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCGTTCGATAGATACAATGTGATCGTTAAAGGTTTATCCGGTAAGCCATTGACCATTAACGGAGCTCTCCTCCGTATACTGGGCATATGGGGGTTCTCTCTGATTTGGACGATCGCGCCTATGTTAGGCTGGAACAGGTAAATCGC-----TTAATCGTGATAACGTTCTTGTTATCGATAAATCTTATTCACATTTCATTCGAAAGTTGATTACGAGTAACAAAATGTACGATTCTTCTCTTTAGATATGTACCAGAGGGTAACATGACCGCATGTGGTACCGATTACTTCAGCAGAGACATTGTGTCTGTTTCTTACATTATACTATACAGCATCTGGGTTTACTTCATCCCGCTGTTCCTTATTATCGGGAGTTACTACTACATCATCCAAGCGGTAGCTGCCCATGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTGGCATCTCTCCGATCATCCGAAAATCAAAATACCAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Tetragonisca_augustula ACTTGGACCTCTCTTCTGTCAAATTTACGCGATGTTGGGCTCGTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCGTTCGATAGATACAATGTGATCGTTAAAGGTTTATCCGGTAGGCCATTAACCATTAACGGAGCTCTCCTCCGTATACTGGGCATATGGGGGTTCTCTCTGATTTGGACCATCGCACCTATGTTAGGCTGGAATAGGTAAATCGC-----TTAATCGTGATAACGTTCTTGTTATCGATAAATCTTGTTAACATTTCATTTGAAAGTTGATTACAAATAACAAAATGTACGATTCTCCCCTTTAGATATGTACCAGAGGGTAACATGACCGCATGTGGTACCGATTACTTCAGCAGAGACATAGTGTCTGTTTCTTACATTATATTATACAGCATCTGGGTTTACTTCATCCCGCTGTCCCTTATTATCGGGAGTTACTGGTACATCATCCAAGCGGTAGCTGCCCATGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTGGCATCTCTCCGATCATCCGAAAATCAAAATACCAGTGCGGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Tetragonula_fuscobalteata NNNNNNNNNNNNCTTCTGTGAAATTTACGCGATGTTGGGCTCGTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCATTCGATAGATACAATGTGATCGTTAAAGGTTTATCCGGTAAGCCATTAACCATTAACGGGGCTCTCCTCCGTATACTGGGCATATGGGCGTTCTCTCTGATTTGGACCATCGCGCCTATGTTAGGCTGGAATAGGTAATTCGC-----TTGAGCGTGACAATG-------TCTTGATAAATCTTATCGGCATTTTATTCGAAAGCTGATTACGAGTAACAAAATGTATGATTCTCTTCTTTAGATACGTACCAGAGGGTAACATGACCGCATGTGGTACCGATTACTTCAGCAGAGACATATTGTCTGTTTCTTACCTTGTATTATACAGCATCTGGGTTTACTTCATCCCGCTGTCCCTTATTATCGGAAGTTACTACTATATCATCCAAGCGGTAGCTGCCCATGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAATGTGGCATCTCTCCGATCGTCCGAAAATCAGAATACTAGCGCGGAGTGTAAATTGGCGAAAGTATGACTGTCTAATTTGTAACGCAATGAACAATTAATTTTTAATTCTCTTTATTTGTAACGAGAATTGAGATGTTTTATAATAATTCTAGGTTGCCCTTATGACAATCTCTTTA Trigona_amazonensis ACTTGGTCCTCTCTTCTGTCAAATTTACGCGATGTTGGGCTCGTTGTTCGGATGTGGCTCCATATGGACGATGACGATGATTGCGTTTGATAGATACAATGTGATCGTTAAAGGTTTATCCGGTAAGCCATTAAGCATTAACGGAGCTCTCTTCCGTATACTGTGCATATGGGGGTTCTCTCTGATTTGGACGATCGCGCCTATGTTAGGCTGGAATAGGTAAATCGC-----TTAATCGCGATAACGTTCTTGTTATCGATAAATCTTATAGACATTTCATTCGAAAGTTGATTACGAATAACAAAATGTACGATTCTCCTCTTTAGATATGTACCAGAGGGTAACATGACCGCATGTGGTACCGATTACTTCAGCAGAGACATAGTGTCTGTTTCTTACATTATATTATACAGCATCTGGGTTTACTTCATCCCGCTGTTCCTTATTATCGGGAGTTACTGGTACATCATCCAAGCGGTATGTGCCCACGAGAAGAATATGCGCGAACAAGCCAAAAAGATGAACGTGGCCTCTCTCCGATCATCCGAAAATCAAAATACCAGTGCGGAGTGTAAATTGGCGAAAGTATGAACACCTAATTTGCAACGCAATGAATACTTAATTTTTAATTCTCTTTATTTGTTACGAGA-------TGTTTTATAATAATTCTAGGTTGCCCTTATGACAATCTCTTTA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = reduced_opsin) = N: 1-702; CODONPOSSET CodonPositions (CHARACTERS = reduced_opsin) = N: 1-702; END; [ The following blocks are output data for analysis step 3940 ] BEGIN TREES; TITLE Tb8712; LINK TAXA = TaxaForAnalysisStep3940; TREE reduced_opsin = [&R] (((((Bombus_caliginosus,Bombus_sporadicus),(Bombus_rubicundus,Bombus_breviceps,Bombus_lapidarius),((((Bombus_veteranus,Bombus_dahlbomii),Bombus_opifex,Bombus_bohemicus),(Bombus_consobrinus,Bombus_diversus),Bombus_appositus),Bombus_soroeensis)),((Bombus_auricomus,Bombus_confusus),Bombus_mendax)),((((Odontotrigona_haematoptera,(Geniotrigona_thoracica,Heterotrigona_itama)),Tetragonula_fuscobalteata),(Axestotrigona_ferruginea,Meliponula_bocandei),(Liotrigona_mahafalya,Hypotrigona_gribodoi)),(Melipona_grandis,(Tetragonisca_augustula,Plebeia_frontalis,Trigona_amazonensis)))),(Eulaema_boliviensis,Euglossa_imperialis),Apis_dorsata); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2902] END;