#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 08, 2025; 17:31 GMT TreeBASE (cc) 1994-2008 Study reference: Park M., Culler C., & Pryor B. 2007. A re-examination of the phylogenetic relationship between the causal agents of carrot black rot, Alternaria radicina and A. carotiincultae. Mycologia, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1944] [ The following blocks are input data for analysis step 3994 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3994; DIMENSIONS NTAX=34; TAXLABELS Alternaria_alternate Alternaria_carotiincultae_BMP0064 Alternaria_carotiincultae_BMP0075 Alternaria_carotiincultae_BMP0076 Alternaria_carotiincultae_BMP0078 Alternaria_carotiincultae_BMP0095 Alternaria_carotiincultae_BMP0129 Alternaria_carotiincultae_BMP0130 Alternaria_carotiincultae_BMP0131 Alternaria_carotiincultae_BMP0132 Alternaria_carotiincultae_BMP0133 Alternaria_petroselini Alternaria_radicina_BMP0047 Alternaria_radicina_BMP0055 Alternaria_radicina_BMP0062 Alternaria_radicina_BMP0065 Alternaria_radicina_BMP0066 Alternaria_radicina_BMP0073 Alternaria_radicina_BMP0074 Alternaria_radicina_BMP0079 Alternaria_radicina_BMP0089 Alternaria_radicina_BMP0090 Alternaria_radicina_BMP0093 Alternaria_radicina_BMP0094 Alternaria_radicina_BMP0096 Alternaria_radicina_BMP0097 Alternaria_radicina_BMP0098 Alternaria_radicina_BMP0099 Alternaria_radicina_BMP0104 Alternaria_radicina_BMP0105 Alternaria_radicina_BMP0108 Alternaria_radicina_BMP0111 Alternaria_selini Alternaria_symrnii ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2970] TITLE gpd; LINK TAXA = TaxaForAnalysisStep3994; DIMENSIONS NCHAR=577; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Alternaria_alternate CCGTATCGTCTTCCGCAATGCGTAAGTTTCGCCTAACTC-GTCGATACAATCTACCAGAGCTGACCGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTACGCTGTAAGCTTCCCCAAGCACCCACACTACAGCCGCGGCCATCCAAGTTGCGAAAACAGTCCTTGCGATGCGCTAGAGCTCCTCTGTGGTCGCAGAATGCAGGCTAACACATTCAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACTGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTCGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATTTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTTATGGGTGTCAACCACGAGACTTACAAGTCTGACATCGAGGTTCTCTCCAACGCCTC Alternaria_carotiincultae_BMP0064 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_carotiincultae_BMP0075 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_carotiincultae_BMP0076 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_carotiincultae_BMP0078 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_carotiincultae_BMP0095 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_carotiincultae_BMP0129 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_carotiincultae_BMP0130 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_carotiincultae_BMP0131 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_carotiincultae_BMP0132 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_carotiincultae_BMP0133 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_petroselini CCGTATCGTCTTCCGCAATGCGTAGGTTTTGCCCA-TTCCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAATGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTACGCTGTAAGCTCCCCCAAGCACCTACACTACAGCC------GTCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCTACAGTCGCAGAGTGCAGGCTAACACATCCAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACGGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTTTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGCCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0047 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0055 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0062 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGATACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0065 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0066 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0073 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0074 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGATACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0079 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGATACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0089 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0090 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0093 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0094 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0096 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0097 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0098 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0099 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0104 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0105 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAAAGCTGACGGCATGCCACAGTATCGAGCACAACGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCTGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0108 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_radicina_BMP0111 CCGTATCGTCTTCCGCAATGCGTAGGTTTCACCCA-TTGCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAACGATGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTATGCTGTAAGCTTCCCTAAGCACCCGCGCTACAGCCACAGCCATCCAGATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCCACAGTCGCAGAGTGCAGGCTAACACATCTAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGTCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_selini CCGTATCGTCTTCCGCAATGCGTAGGTTTTGCCCA-TTCCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAATGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTACGCTGTAAGCTCCCCCAAGCACCTACACTACAGCC------GTCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCTACAGTCGCAGAGTGCAGGCTAACACATCCAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACGGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTTTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGCCCGACATCGAGGTTCTCTCCAACGCCTC Alternaria_symrnii CCGTATCGTCTTCCGCAATGCGTAGGTTTTGCCCA-TTCCGTCGATACAGTGTATCAGAGCTGACGGCATGCCACAGTATCGAGCACAATGACGTCGACATTGTCGCCGTAAACGACCCCTTCATCGAGCCCCACTACGCTGTAAGCTCTCCCAAGCACCCACACTACAGCC------ATCCAAATCGCGACATCAGTCCTTGCGATGCGCTAGAGCTCCTCTACAGTCGCAGAGTGCAGGCTAACACATCCAGGCCTACATGCTCAAGTATGACAGCACACACGGCCAGTTCAAGGGTGAGATCAAGGTTGACGGCAACAACCTGACCGTCAACGGCAAGACCATCCGTTTCCACATGGAGAAGGACCCCGCCAACATCCCATGGAGCGAGACCGGCGCTTACTACGTCGTTGAGTCCACCGGTGTCTTCACCACCACCGAGAAGGCCAAGGCTCACTTGAAGGGTGGAGCCAAGAAGGTCGTCATCTCTGCTCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTCAACCACGAGACTTACAAGCCCGACATCGAGGTTCTCTTCAACGCCTC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = gpd) = N: 1-577; CODONPOSSET CodonPositions (CHARACTERS = gpd) = N: 1-577; END; [ The following blocks are output data for analysis step 3994 ] BEGIN TREES; TITLE Tb8766; LINK TAXA = TaxaForAnalysisStep3994; TREE Fig._5 = [&R] (Alternaria_alternate,((Alternaria_symrnii,(Alternaria_selini,Alternaria_petroselini)),((Alternaria_carotiincultae_BMP0133,Alternaria_carotiincultae_BMP0132,Alternaria_carotiincultae_BMP0131,Alternaria_carotiincultae_BMP0130,Alternaria_carotiincultae_BMP0129,Alternaria_carotiincultae_BMP0095,Alternaria_carotiincultae_BMP0078,Alternaria_carotiincultae_BMP0076,Alternaria_carotiincultae_BMP0075,Alternaria_carotiincultae_BMP0064,Alternaria_radicina_BMP0105,Alternaria_radicina_BMP0096),(Alternaria_radicina_BMP0111,Alternaria_radicina_BMP0104,Alternaria_radicina_BMP0099,Alternaria_radicina_BMP0098,Alternaria_radicina_BMP0108,Alternaria_radicina_BMP0097,Alternaria_radicina_BMP0094,Alternaria_radicina_BMP0093,Alternaria_radicina_BMP0090,Alternaria_radicina_BMP0089,(Alternaria_radicina_BMP0079,Alternaria_radicina_BMP0074,Alternaria_radicina_BMP0062),Alternaria_radicina_BMP0073,Alternaria_radicina_BMP0066,Alternaria_radicina_BMP0065,Alternaria_radicina_BMP0055,Alternaria_radicina_BMP0047)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5005] END;