#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 05, 2024; 13:26 GMT TreeBASE (cc) 1994-2008 Study reference: Shefferson R., Kull T., & Tali K. 2007. Mycorrhizal interactions of orchids colonizing Estonian mine tailings hills. American Journal of Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1953] [ The following blocks are input data for analysis step 4008 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4008; DIMENSIONS NTAX=31; TAXLABELS Cantharellales_ex_Cypripedium_arietinum Cantharellales_ex_Cypripedium_californicum Cantharellales_ex_Cypripedium_californicum_2 Cantharellales_ex_Cypripedium_californicum_3 Cantharellales_ex_Cypripedium_californicum_4 Cantharellales_ex_Cypripedium_fasciculatum Cantharellales_ex_Cypripedium_fasciculatum_2 Cantharellales_ex_Cypripedium_fasciculatum_3 Cantharellales_ex_Cypripedium_guttatum Cantharellales_ex_Cypripedium_macranthon_rebunense Cantharellales_ex_Cypripedium_macranthon_rebunense_2 Cantharellales_ex_Cypripedium_macranthon_rebunense_3 Cantharellales_ex_Cypripedium_macranthon_rebunense_4 Cantharellales_ex_Cypripedium_parviflorum Cantharellales_ex_Epipactis_atrorubens Cantharellales_ex_Orchis_militaris Cantharellales_ex_Orchis_militaris_2 Multiclavula_corynoides Multiclavula_vernalis Tulasnella_asymmetrica Tulasnella_calospora Tulasnella_calospora_2 Tulasnella_calospora_3 Tulasnella_cystidiophora Tulasnella_eichleriana Tulasnella_pruinosa Tulasnella_sp._1 Tulasnella_sp._2 Tulasnella_sp._3 Tulasnella_tomaculum Tulasnella_violea ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3784] TITLE ITS_Tulasnellaceae; LINK TAXA = TaxaForAnalysisStep4008; DIMENSIONS NCHAR=172; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 ] [ . . . . . . . . . . . . . . . . . ] Cantharellales_ex_Cypripedium_arietinum ACAACCAGTAGCATTGGATCCCTTGGCACGTCATTCGATGAAGAACGTAGCAATCTGCGATAA?GTGGTGTGATATGCAAGTCCACAGCTTATACGTGAACCATCGAATCTTTGAACGCACTGCACTATCCGGACGACTCCCCCGTGATAGTATGCCCCGTTGAGTGTCATT Cantharellales_ex_Cypripedium_californicum ACAACTTTTAACAACGGATCTCTTGGCTCTCGCATCG??GA?GAACGCAGCGAAATGCGATAC?GTAATGTGAATTGCAG??????AATTCA???GTGAATCAT?GAATTTTTGAACGCACCTTGCG??CTCCTTGGTATTCCGA??GGAGCACGCCTGTTCGAGTGTCGTG Cantharellales_ex_Cypripedium_californicum_2 ACAACTATCAACAACGGATCTCTTGGCATCCCGCTCGATGAAGAACGCAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCATCGAATCTTTGAACGCACCTTGCA??CCTTTTGGTATTCCGA??AAGGTACGCCCGGTTGAGTATTATG Cantharellales_ex_Cypripedium_californicum_3 ACAACTATCAACAACGGATCTCTTGGCATCCCACTCGATGAAGAACGCAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCATCGAATCTTTGAACGCACCTTGCG??CCCTCTGGTATTCCGG??AGAGCATGCCCGGTTGAGTATTATG Cantharellales_ex_Cypripedium_californicum_4 ACAACTATCAACAACGGATCTCTTGGCATCCCACTCGATGAAGAACGCAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCATCGAATCTTTGAACGCACCTTGCG??CCCTCTGGTATTCCGG??AGAGCATGCCCGGTTGAGTATTATG Cantharellales_ex_Cypripedium_fasciculatum ACAACCGGTAGCACTGGATCCCTCGGCTCGTTGCTCGATGAAGACCGTAGCCACTTGCGATAA?CTGATGTGATATGCAAGTTCAAAGCTTACACGTGAATCAT?GAGTCGTTGAACGCATTGCAC????CGTCCACTAAACCTGG?ATGGTACGCCACCTTCAGCATCATT Cantharellales_ex_Cypripedium_fasciculatum_2 ACAACTAGTAGCACTGGATCCCTTGGCACGTCATTCGATGAAGAACGTAGCAATCTGCGATAA?GTGGTGTGATATGCAAGTCCACAGCTTATACGTGAACCAT?GAATCTTTGAACGCACTGCACTATCCGGACGACACCCCCGTGATAGTATGCCCCATTGAGTGTCATT Cantharellales_ex_Cypripedium_fasciculatum_3 ACAACTATCAACAACGGATCTCTTGGCATCCCGCTCGATGAAGAACGCAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCATCGAATCTTTGAACGCACCTTGCA??CCTTTTGGTATTCCGA??AAGGTACGCCCGGTTGAGTATTATG Cantharellales_ex_Cypripedium_guttatum ACAACCAGTAGCATTGGATCCCTTGGCACGTCATTCGATGAAGAACGTAGCAATCTGCGATAA?GTGGTGTGATATGCAAGTCCACAGCTTATACGTGAACCAT?GAATCTTTGAACGCACTGCACTATCCGGACGACTCCCCCGTGATAGTATGCCCCATTGAGTGTCATT Cantharellales_ex_Cypripedium_macranthon_rebunense ACAACTGGTAGCGTTGGATCCCTCGGCATGGCTATCGATGAAGAGCGCGGCCAGCTGCGA?AATGTGATGTGAATTGCAACTCAAAGCGGTTATCGTGAATCATTGACTACTTGAACGCATTGCAC????CGCCCTTT????TGGGAGTGGTACGCCCGATTGAGTGTCATA Cantharellales_ex_Cypripedium_macranthon_rebunense_2 ACAACCGGTAGCGCTGGATCCCTTGGCACGTCATTCGATGAAGACCGTTGCAAATTGCGATAAAGTGATGTGATGCGCAAGTCCACCACTTATACGTGAATCAT?GAGTTGTTGAACGCACCGCAC????CGCGCCCTAACCCGGCTGCGGTATGCCCCTTTGAGCGTCATT Cantharellales_ex_Cypripedium_macranthon_rebunense_3 ACAACCGGTAGCGATGGATCCCTTGGCACGTCATTCGATGAAGACCGTTGCAAATTGCGATAAAGTGATGTGATGCGCAAGTCCACCACTTATACGTGAATCAT?GAGTTGTTGAACGCATTGCAC????CGCGCCCTAATCCGGCTGCGGTATGCCCCTTTGAGCGTCATT Cantharellales_ex_Cypripedium_macranthon_rebunense_4 ACAACCGGCAGCGCTGGATCCCTTGGCACGTCATTCGATGAAGACCGTTGCAAATTGCGATAAAGTGATGTGATGCGCAAGTCCACCACTTATACGTGAATCAT?GAGTTGTTGAACGCATTGCAC????CGCGCCCTAATCCGGCTGCGGTATGCCCCTTTGAGCGTCATT Cantharellales_ex_Cypripedium_parviflorum ACAACTGGTAGCGTTGGATCCCTCGGCATGGCTATCGATGAAGAGCGCGGCCAGCTGCGA?AATGTGATGTGAATTGCAACTCAAAGCGGTTATCGTGAATCATTGACTACTTGAACGCATTGCAC????CGCCCTTT????TGGGAGTGGTACGCCCGATTGAGTGTCATA Cantharellales_ex_Epipactis_atrorubens ACAACTCATAGCGTTGGATCCCTTGGCATGCCATTCGATGAAGACCGTTGCAAAATGCGATAA?GTGGTGTGATATGCAAGTCCAAAACTTATACGTGAATCAT?GAATTGTTGAACGCACTGCAT????CGATCCTTA?TCCAGGAACGATACGCCCTATTGAGCGTCATT Cantharellales_ex_Orchis_militaris ACAACCAGTAGCGTTGGATCCCTTGGCATGTCATTCGATGAAGACCGTTGCAAAATGCGATAA?GTGGTGTGATATGCAAGTCCAAAACTTATACGTGAACCAT?GAATTGTTGAACGCACTGCAT????CGAGCCTTA?CCCAGGAACGATACGCCCCATTGAGCGTCATT Cantharellales_ex_Orchis_militaris_2 ACAACTGGTAGCGTTGGATCCCTTGGCACGCCATTCGATGAAGACCGTAGCAAATTGCGATAA?GTGGTGTGATATGCGAGTCCAAAACTTATACGTGAACCAT?GAATTGTTGAACGCATTGCAT????CGAGCTTTG?CCCAAGCACGATATGCCCCATTGAGCGTCCTT Multiclavula_corynoides ACAACCGGCAGCGCTGGATCCCTTGGCACGTCATTCGATGAAGACCGTTGCAAATTGCGATAAAGTGATGTGATGCGCAAGTCCACCACTTATACGTGAATCAT?GAGTTGTTGAACGCATTGCAC????CGCGCCCTAAACCGGCTGCGGTATGCCCCTTTGAGCGTCATT Multiclavula_vernalis ACAACCGGTAGCGATGGATCCCTTGGCACGTCATTCGATGAAGACCGTTGCAAATTGCGATAAAGTGATGTGATGCGCAAGTCCACCACTTATACGTGAATCAT?GAGTTGTTGAACGCATTGCAC????CGCGCCCTAAACCGGCTGCGGTATGCCCCTTTGAGCGTCATT Tulasnella_asymmetrica ACAACTTTCAACAACGGATCTCTTGGCATCCCACTCGATGAAGAACGCAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCATCGAATCTTTGAACGCACCTTGCG??CCCTCTGGTATTCCGG??AGAGCATGCCCGGTTGAGTATTATG Tulasnella_calospora ACAACTATCAACAACGGATCTCTTGGCATCCCGCTCGATGAAGAACGCAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCATCGAATCTTTGAACGCACCTTGCA??CCCTCTGGTATTCCGG??AGGGTATGCCCGGTTGAGTATTATA Tulasnella_calospora_2 ACAACTATCAACAACGGATCTCTTGGCATCCCGCTCGATGAAGAACGCAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCATCGAATCTTTGAACGCACCTTGCA??CCCTCTGGTATTCCGG??AGGGTATGCCCGGTTGAGTATTATA Tulasnella_calospora_3 ACAACCATCAGCAACGGATCTCTTGGCATTCCAATCGATGAAGAACGTAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCAT?GAATCTTTGAACGCACCTTGCA??CCCTCTGGTATTCCGG??AGGGTATGCCCGGTTGAGTGTCATG Tulasnella_cystidiophora ACAACTTTTAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAC?GTAATGTGAATTGCAG??????AATTCA???GTGAATCAT?GAATCTTTGAACGCACCTTGCG??CTCCTTGGTATTCCGA??GGAGCACGCCTGTTCGAGTGTCGTG Tulasnella_eichleriana ACAACTATCAACAACGGATCTCTTGGCATCCCACTCGATGAAGAACGCAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCATCGAATCTT?GAACGCACCTTGCA??CCTTCTGGTATTCCGG??AAGGTATGCCCGGTTGAGTATTATG Tulasnella_pruinosa ACAACTATCAACAACGGATCTCTTGGCATCCCACTCGATGAAGAACGCAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCATCGAATCTTTGAACGCACCTTGCA??CCTTCCAGTATTCTGG??AGGGTATGCCCGGTTGAGTATTATG Tulasnella_sp._1 ACAACTATCAACAACGGATCTCTTGGCATCCCACTCGATGAAGAACGCAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCATCGAATCTTTGAACGCACCTTGCA??CCTTCCAGTATTCTGG??AGGGTATGCCCGGTTGAGTATTATG Tulasnella_sp._2 ACAACCATCAGCAACGGATCTCTTGGCATCCCACTCGATGAAGAACGTAGCGAATTGCGATAA?GTAATGTGACTTGCAG??????AACACA???GTGAATCAT?GAATCTTTGAACGCACCTTGCA??CCCTCTAGTATTCTGG??AGGGTATGCCCGGTTGAGTGTCATG Tulasnella_sp._3 ACAACCATCAGCAACGGATCTCTTGGCATCCCACTCGATGAAGAACGTAGCGAATTGCGATAA?GTAATGTGACTTGCAG??????AACACA???GTGAATCAT?GAATCTTTGAACGCACCTTGCA??CCCTCTAGTATTCTGG??AGGGTATGCCCGGTTGAGTGTCATG Tulasnella_tomaculum ACAACCATCAGCAACGGATCTCTTGGCATTCCACTCGATGAAGAACGTAGCGAATTGCGATAA?GTAATGTGACTTGCAG??????AACACA???GTGAATCAT?GAATCTTTGAACGCACCTTGCA??CCTTCCAGTATTCTGG??AGGGTATGCCCGGTTGAGTGTCTTG Tulasnella_violea ACAACTATCAACAACGGATCTCTTGGCATCCCACTCGATGAAGAACGCAGCGAATTGCGATAA?GTAATGTGAATTGCAG??????AATTCA???GTGAATCATCGAATCTTTGAACGCACCTTGCA??CCTTCCAGTATTCTGG??AGGGTATGCCCGGTTGAGTATTATG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_Tulasnellaceae) = N: 1-172; CODONPOSSET CodonPositions (CHARACTERS = ITS_Tulasnellaceae) = N: 1-172; END; [ The following blocks are output data for analysis step 4008 ] BEGIN TREES; TITLE Tb8780; LINK TAXA = TaxaForAnalysisStep4008; TREE Fig._3 = [&R] ((Multiclavula_corynoides,Multiclavula_vernalis),(Cantharellales_ex_Cypripedium_macranthon_rebunense_2,((Cantharellales_ex_Cypripedium_macranthon_rebunense,Cantharellales_ex_Cypripedium_parviflorum),((Cantharellales_ex_Cypripedium_macranthon_rebunense_3,Cantharellales_ex_Cypripedium_macranthon_rebunense_4),(((Cantharellales_ex_Epipactis_atrorubens,(Cantharellales_ex_Orchis_militaris,Cantharellales_ex_Orchis_militaris_2)),(Cantharellales_ex_Cypripedium_fasciculatum,(Cantharellales_ex_Cypripedium_fasciculatum_2,Cantharellales_ex_Cypripedium_guttatum))),(Cantharellales_ex_Cypripedium_arietinum,((Tulasnella_cystidiophora,(Cantharellales_ex_Cypripedium_californicum,Cantharellales_ex_Cypripedium_fasciculatum_3)),((Cantharellales_ex_Cypripedium_californicum_4,(Cantharellales_ex_Cypripedium_californicum_2,Cantharellales_ex_Cypripedium_californicum_3)),(((Tulasnella_sp._1,(Tulasnella_asymmetrica,Tulasnella_pruinosa)),(Tulasnella_violea,(Tulasnella_sp._3,((Tulasnella_calospora,Tulasnella_calospora_2),(Tulasnella_calospora_3,Tulasnella_sp._2))))),(Tulasnella_eichleriana,Tulasnella_tomaculum)))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5022] END;