#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 05, 2024; 15:10 GMT TreeBASE (cc) 1994-2008 Study reference: Shefferson R., Kull T., & Tali K. 2007. Mycorrhizal interactions of orchids colonizing Estonian mine tailings hills. American Journal of Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1953] [ The following blocks are input data for analysis step 4009 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4009; DIMENSIONS NTAX=41; TAXLABELS Cadophora_finlandia Cadophora_finlandica Chalara_dualis Chalara_microchona Genabea_cerebriformis Genea_arenaria Genea_cazaresii Genea_gardnerii Genea_harknessii Geopora_cooperi Geopyxis_carbonaria Geopyxis_carbonaria_2 Geopyxis_carbonaria_3 Geopyxis_rehmii Geopyxis_sp. Gilkeya_compacta Marcelleina_sp Otidea_umbrina Pezizomycotina_ex._Epipactis_atrorubens Pezizomycotina_ex._Epipactis_atrorubens_2 Pezizomycotina_ex._Epipactis_atrorubens_3 Pezizomycotina_ex._Epipactis_atrorubens_4 Pezizomycotina_isolate_DQ974752 Pezizomycotina_spp._uncultured_12 Pezizomycotina_spp.uncultured_14 Pezizomycotina_spp.uncultured_27 Pezizomycotina_spp.uncultured_33 Phialophora_botulispora Phialophora_finlandia Phialophora_gregata Phialophora_malorum Phialophora_melinii Phialophora_sp Strumella_coryneoidea Trichophaea_hybrida Trichophaea_woolhopeia Wilcoxina_mikolae Wilcoxina_mikolae_2 Wilcoxina_rehmii Wilcoxina_rehmii_2 Xenochalara_juniperi ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3783] TITLE ITS_Pezizales; LINK TAXA = TaxaForAnalysisStep4009; DIMENSIONS NCHAR=443; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Cadophora_finlandia AAATGGGTTCTATTCCCAAACCGTGTATAC?AT?ACCTTTGTTGCTTTGGCAGGCC?GCCTTTTA????GGCGTTGGCTCCG?????GCTGAC???TGCGCCTGCCAGAGAACC?CAAACTCTTTAGTAGTG??ATGTCTGAGTACTATATAATA?GTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATAA?CCA?CTCAAGCCTCGGCTTGGTCTTGGGGTTCGCTCGCGGCCC?TTAAA?ATAGTGGCGGTGCCGTC?TGCTAAGCGTAGTA?ATTTT?CTCGCTA?TAGGGTCCAGGCG?ACCACCTGCC Cadophora_finlandica AAATGGGTTCTATTCCCAAACCGTGTATAC?AT?ACCTTTGTTGCTTTGGCAGGCC?GCCTTTTA????GGCGTCGGCTCCG?????GCTGAC???TGTGCCTGCCAGAGGATC?CAAACTCTTTTGTAGTG??ATGTCTGAGTACTATATAATA?GTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATAA?CCA?CTCAAGCCTCGGCTTGGTCTTGGGGTTCGCTCGCGGCCC?TTAAA?ATAGTGGCGGTGCCGTC?TGCTAAGCGTAGTA?ATTCT?CTCGCTA?TAGGGTCCAGGTG?ATCACCTGCC Chalara_dualis GGGTAGACC????TCCCACCCTTTGTATAC?ATTGCCTTTGTTGCTTTGGCGGACC?GCCTTTTG????GCCATCGGCTCCG?????GCTGGTG??CGTGTCCGCCAGAGAACC?CAAACCCTGTCTTAGTG??TCGTCCGAGTACTATATAATA?GTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAATTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAA?CC??CTCAAGC?TCTGCTTGGTCTTGGGCTATGCCGGTAGGCC?TCAAA?CAAGTGGCGGCGCCATCGTGCTCAGCGTAGTA?ATTCTTCTCGCTG?TTGGGTTCCGGTG?GTCGCTGGCC Chalara_microchona CTCACGGGTGACTCTCCAACCCTATGTTATTAAAACCTTTGTTGCTTTGGCGAGCC?GCTTC??????GGCCACCGGCTTCT?????GCTGGTGTGCGCT??CGCCAGAGGACCACAAACTCTGTTTAAGT??GTCGTCTGAGTACTATATAATA?GTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCAGTACAA?C?A?CTCAAGCTCT?GCTTGGTATTGGACCGCATTGATCGGTC?TTAAA?ATAGTGGCGGTGCCATC?GTCTAAGCGTAGTA?ATACTCCTCGCTA?CAGGGTCCCGGTG?CGTGCTTGCC Genabea_cerebriformis CTGAGTATCTTT??CCTGTTGCTTCCGTGAGGTT??TGGTGAGTCACGCGCTCTGCCTTGTTTTCTGGGTTGGATCTTAGAG????????AATGCCCTGCGGAAGGGAAGCACCGCCGCCTTTGAATATGATATTGGTCTGT???TTTGAAGAAACATTAAAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGAAAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCGCGGTATTCCGCGAGGCATGCCTGTTCGAGCGTCGTTAACAACCC?TTCAAGCCTTCACTTGGTTGTGGTGGATGATATCTCACCTCCCAAACTAATGGCTCACTCAAAAGCACAGTGGTCGTAGGTGATTAGCCTCCTCACCCGGTGAAAGTGTAGCCCATC Genea_arenaria TTCAGTT???CATGCTGTGTTA??TATA?A????????ACCCACTCTGTGTACAT?TCTCCTGTTGCTTCCGCTGGGTGTGGCGGCATTTGTTGCCTCTGGCGGAAGGGTAAAAATAACTTCTTAGAGTTGAAAATCTCTATAGAAACAAAAAAATATTAAAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTCCGGTATTCCGGAAGGCATGCCTGTTCGAGAATCATTAACAACCATCTCGAATCCTCCAAAAGTGGTTGGGGGGGGA?CTTGCCCACTAATATGCCTCCCCACTGAAATTTGTTTGGGTTTTT???????????????????????????????????????? Genea_cazaresii GGGACAAACCCAGCTCTAAGCTGTACGTCACGTTCCTGGCGGCTTTCCGAGGAGGCCGCTCACCAGGCGCCCACCTAGCCCG????????GCAGTGCTCCAGCGGAATGTCAAATACATCCGTGTCTATGAAATCTGTCTAAGAACAATATGAAACGTTAAAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTCTGGTATTCCGGAGGGCATGCCTGTTCGAGAGTCATTAACAACTG?TTTCGATCCCTCCTTGGTCATGGCGGAGGACGCCTCCCCACCAAAATTACAGGCGGTCTTGTCGGCCGAGGTGTTGTAAAAGCTGCCCTTTCACCGCAAGAGGAAGATTGGCCAGCC Genea_gardnerii CTCAGTCATGCACGCTGCGTGAGCTGTTAGCTATACACACCCACCCTGCGTACGT?CCTCCTGTTGCTTCCCGTCCGGT???????GCCTGCGCCCG??GGCGGGAGGGGCAAAACAACCTCCAAATTCCGAATCTGTCTACG????AATGAAAAAGTTAAAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTCTGGTATTCCGGGAGGCATGCCTGTTCGAGAGTCATTGACAACCATCCCAAATCCCCCTCGGGTTCTGGTGGATGACTCCTCTCCTCCCAAATTGCCGGCTTTTATA??GAGAC??GCCTGCTGCGTTTTAATGCCCTTGCGGGACCTTTCGGGGCCACGGAC Genea_harknessii TTCAGTCATGCTTGCTGCGTGAG?GC??TAC???????ACCCACCCTGCGTACACATCTCCTGTTGCTT???????GCCCAGATGAGAAT?CTGCCC??GGCGGGAGGGTAGAAAAAACCTCCGAGTCTAGAATCTGTCTAGAAACCAAATGAAATGTTAAAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGCATTCCGGGAGGCATGCCTGTTCGAGAGTCATTTACAACCACATCGAACCCCCCTTCGGTTCTGGAGGAGGAATCCTGCCCACCAAAATTGGTGACCGCTGCGTTGTCGTTGGCCTGCTAAGATAGGCAACCCCTCCTAAGCGGTCTGTGTTCAAAAAC Geopora_cooperi TCTGTGCACCTT?ACCTGTTGCTTCCGTGCTGCGTGTGCC?GAACAGGCACGCCCCAA?CGTCATCTCTCCCA?GTGTGGAGGGTGCTTTGGAGATTGC??GCGGAAGGTTT?TAGAAACTCTTGTATTGCCTTCTGTCTCTGTCAAATACAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCACCTCCTGGTATTCCGGGAGGTATGCCTGTTCGAGCGTCATTAAAATCAA?ATCAAGCAATTTCATGGTCATGGAGGAAGAGGTCTCCCCTCCGAAATGAAAGGTGGAGAGTCTC?TCTCGGTGTAGTAG???TAAC?ATTCGCTTTGTATCTGGAGTCTTTCCTGCC Geopyxis_carbonaria TCGCCGGACGTACGGTAAAAGTCCGTAGCCTCATTTTGGTTTTACCAAAACTCTTCTGTGTACCTATTACTTGTTGCTTCCC?????????TGGGGTAACTCAGGGAAGGCATACAATACTCTGTTTATGTAGTCAGTCTGTTTATTTATAAAC??GTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATCAAAA?CTA?CTCAAGCTAAGGCTTGGTCTTGGAATTGGATGTCTCCTTTCTGAAATAAGTGGCGAATTGACTGTGGTAAACGTAGTAACT?????TTACCCGTTGA????AAGCATGTTCACATTC Geopyxis_carbonaria_2 TCGCCGGACGTACGGTAAAAGTCCGTAGCCTCATTTTGGTTTTACCAAAACTCTTCTGTGTACCTATTACTTGTTGCTTCCC?????????TGGGGTAACTCAGGGAAGGCATACAATACTCTGTTTATGTAGTCAGTCTGTTTATTTATAAAC??GTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATCAAAA?CTA?CTCAAGCTAAGGCTTGGTCTTGGAATTGGATGTCTCCTTTCTGAAATAAGTGGCGAATTGACTGTGGTAAACGTAGTAACT?????TTACCCGTTGA????AAGCATGTTCACATTC Geopyxis_carbonaria_3 TCGCTGGACGTACGGTAAAAGTCCGTAGCCTCATTTTGGTTTTACCAAAACTCTTCTGTGTACCTATTACTTGTTGCTTCCC?????????TGGGGTAACTCAGGGAAGGCATACAATACTCTGTTTATGTAGTCAGTCTGTTTATTTATAAAC??GTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATCAAAA?CTA?CTCAAGCTAAGGCTTGGTCTTGGAATTGGATGTCTCCTTTCTGAAATAAGTGGCGAATTGACTGTGGTAAACGTAGTAACT?????TTACCCGTTGA????AAGCATGTTCACATTC Geopyxis_rehmii TCGCGGGATGTACGGTAAAAGTCCGTAGCCTT?TTTTGGTATTACCATAACTCTTCTGTGTACCTATTACTTGTTGCTTCCC?????????TGGGGTAACTCAGGGAAGGCATACAATACTCTGCCTATGCAGTCAGTCTGTTTATTTATAAAC??GTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATCAAAA?CTA?CTCAAGCTAAGGCTTGGTCTTGGAACTGGATGTTTCCTTTCTGAAATAAGTGGCGAATTGACTGTGGTAAACGTAGTAACT?????TTACCCGTTGA????AAGCATGTTCACATTC Geopyxis_sp. TCGCGGGATGTACGGTAAAAGTCCGTAGCCTT?TTTTGGTATTACCATAACTCTTCTGTGTACCTATTACTTGTTGCTTCCC?????????TGGGGTAACTCAGGGAAGGCATACAATACTCTGCCTATGCAGTCAGTCTGTTTATTTATAAAC??GTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATCAAAA?CTA?CTCAAGCTAAGGCTTGGTCTTGGAATTGGATGTTTCCTTTCTGAAATAAGTGGCGAATTGACTGTGGTAAACGTAGTAACT?????TTACCCGTTGA????AAGCATGTTCACATTC Gilkeya_compacta GTTATCAATCCACCTCTGAG?TACCTATCCTGTTGCTTCCG?????TGGGGCACGGCACTTGCTGCCTGGTGGGCTTTTTTG????????GTTAAGTCCCCACGAA???TCAAATTTGTTCAATTATGGGTGGTCTGACC?????TTATAACAAATGTTAAAACTTTCAGCAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCTTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTAAGAAAGC?ACTCAAGCTCTTCTTGGTCATGGCGGCAGA????TCCCCTCCAAAATTAAAGGCGG????ATTGCACCTGGCGTAGTAAGTTTTATCATTTCGCT???AGGTGATGTCGTGTGGCCC Marcelleina_sp GCTGCTGCTGGTGGTTCAGGGAAGGGCCCAATTTGCAGTGCCCAGCTTTGCTTAAATGTTCTTCTCCTACTATTCATTGGACATGACCATCTTCACTGCTCCCTCCTCCTGGTGAAACTCTTTTATCTTATA?TTTGTCT???AATTATATGAGAAATTAAAACTTTCAACAACGGATCTCTTGGCTCCTGCATCGATGAAGAACGCAGCGAAATGCGATAATTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCTCTGGGTCTACCTAGAGGCATGCCTGTCTGAGCGCTGGATAGCAGCCTCTCAACAATGTCTTGGATAGTATCAAAGAATTTTTCTTCTCTGGGAGAGGCAAAAAAAACTCTTTGGGTAGTTCTGTAGATACCGAATGACTTGTAAATTTGTTTGGTTTTATATAT Otidea_umbrina TGGGAGCGGCTA?ACCTCCCTCCTGTGTGGGGAGGTCCCCCGAGACAAGCCCCTGCCATCGTTGCAGGCGGTGTGGTCTTGGTCCATGAAGACGCCTTCCTGCGGAGGGTGTGAAGAACCATTTGCATTGCCATCAGTCTTTTGTTAATAACAATTGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGCATTCCGGGAGGCATGCCTGTTCGAGCGTCATAAAAACCCA?CTCAAGCTCTTTCTTGGTTATGGAGGTTGAAACCTCACCTTCGAAATTAGAGGCGGATTGCCCCGTCCTGGCGTTATAAGT?TTGCTCTTTCGCTC??ATTACATGGCCATCTCGCC Pezizomycotina_ex._Epipactis_atrorubens CCTGCGGAAGGATCATTACA?TGTAAATTGACCCTT?AAACCCTTCTGTGTACTTTTACCTGTTATTGGATGATGGAATTAG???????TAAAATATTCCATAGAACAAAAATATTAAACTATTATTCTGATATTTGTCTTTTTGTATAAATAAAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTCTGGTATTCCGGGAGGCATGCCTGTTTGAGCGTCATTAAACCCCA?CTCTAGCAGTTTCTAGGATATGAAGGAAGAAGGCTCTCCTTTGAAATGATTAGTAGATATAAAGTTCT?GTTTTGATGTAAAAGTCTTATTGGTTTGATTTGTATACAACTATATCT Pezizomycotina_ex._Epipactis_atrorubens_2 CCTGCGGAAGGATCATTAAAATGTAAATTGACCCTTTAAACCCTTCTGTGTACTTTTACCTGTTATTGGATGATGGAATTAG???????TAAAATATTCCATAGAACAAAAATATTAAACTATTATTCTGATATTTGTCTTTTTGTATAAATAAAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTCTGGTATTCCGGGAGGCATGCCTGTTTGAGCGTCATTAAACCCCA?CTCTAGCAGTTTCTAGGATATGAAGGAAGAAGGCTCTCCTTTGAAATGATTAGTAGATATAAAGTTCT?GTTTTGATGTAAAAGTCTTATTGG{AG}TTGATTTG{AG}ATACAACTATATCT Pezizomycotina_ex._Epipactis_atrorubens_3 ???CAAACCCT??TGTCAACC??????TAC?CT?GTTTCTGTTGCTTCGGCGGGTG?GCCCCAGGCGGGGCCGTCTGCCTCT?????GTTCGCGGAGGTGCCTGCCAGAAGCCCACAAACTCCTGCGTAGTGGCATGTCTAAGAACATCAAACGA?GTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGTGGGCATGCCTGTTCGAGAGTCATTTCAA?TC??CTCAAGCTCTGGCTTGGTGTTGGGGTTCTACTGTAGGCT?CCAAAGACAGTGGCGGGCTCGCTATACCGAGCGCAGTACATGTATCTCGCTT?TGGAAGTGTGGTG?GGTTCCAGCC Pezizomycotina_ex._Epipactis_atrorubens_4 CCTGTGTATCTT?ACCTGTTGCTTCCGTGCCGCACATGCCTGCGAAGGGGTGCCTCCT?GGTCCGGAATACCGCGTACTGCGGGCCCTGGGGAGTCGGC??ACGCGAGGTTAACCGAAACTCTTGCCTTGTCTTCTGTCTCTGTATTACGTAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCACCAAAATCAA?CTCAAGCACTTTCATGGTCATGGAGGAAGAGGTCTCCCCGCCGAAAATAACGGCGGAAAGTCAC?TCCCGGCGTAGTAG???AATCTGTTCGCTGTTCAGCCAGTGTCGTTCCTGCC Pezizomycotina_isolate_DQ974752 TTCAGTCATGCTTGCTGTGTGAGCTGTATATTATAT?TACCCACCCTGTGTACAC?TGTCCTGTTG?TTCCGCTGGGT????????GTAT?CAGCTT??GGCGGGAGGGTA?AGAAAAACTCGGAGTTTGGAACGTGTCTGAA???CCAACGAAATGTTAAAACTTTCAGCAACGGATCTCTTGGTTCT?GCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTCTGGTATTCCGGGAGGCATGCCTGTTCGAGAGTCATTGACAACCATCTCGAATGCCCCATCGGTTCTGGTGGAGGACCCCTCCCCACCGAAATTATTAACCCACATGTTTTTAGGGGCCT??CGGAGTCACCGACTTTTTCTAA?CAATTTGGGACCATGGAC Pezizomycotina_spp._uncultured_12 CCTGCGGAAGGATCATTAAAATGTAAACTGACCCTTTAAACCCTTCTGTGTACTTT?ACCTGTTATTGGATGATGGAATTAG???????TAAAATATTCCATAGAACAAAGAATTTAAACTATTATTCTGATATTTGTCTTTTTGTATAAATAAAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTCTGGTATTCTGGGAGGCATGCCTGTTTGAGCGTCATTAAACTTAA?CTCTAGCAGTTTCTTGGATATGAAGGAAGAAGGCTCTCCTTTGAAATGATTAGTAGATATAAAGTTCTTGTTTTGATGTAATAGTCTTATTAGTTTGATTTGTATACAGCTATATCT Pezizomycotina_spp.uncultured_14 ??????????????????AAATGTAAATTGACCCTTTAAACCCTTCTGTGTACTTTTACCTGTTATTGGATGATGGAATTAG???????TAAAATATTCCATAGAACAAAAATATTAAACTATTATTCTGATATTTGTCTTTTTGTATAAATAAAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTCTGGTATTCCGGGAGGCATGCCTGTTTGAGCGTCATTAAACCCCA?CTCTAGCAGTTTCTAGGATATGAAGGAAGAAGGCTCTCCTTTGAAATGATTAGTAGATATAAAGTTCT?ATTTTGATGTAAAAGTCTTATTGGTTTGATTTGTATACAACTATATCT Pezizomycotina_spp.uncultured_27 TCTGTGTACCTT?GCCTGTTGCTTCCATGGAG??????CCTGACTTTGGTCACTCT???????????????TGTGATGTAAATCC?CAAGGGAGTCCCC??ATGGAAGGTCATCAAAAACTCATGTATTGTCTTCTGTCTACTGTTTATAACAATTGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTAAATACCT??TCAAGCACCATCTTGGTCATGGAAGATGAATTCTCCCTTCTGAAATTAAAGGCGG??CAT?TCATC?TGGCGTAGTAAGTGTTT?TCT???????????????????????????? Pezizomycotina_spp.uncultured_33 TAGAGGAAGTAA?????AAGTCGTA?ACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAGTATGACCAACGTAGTTG????????GCAATCCTTT?????????TTTTATACTCCTGTTTTCTTTCAGTCTGAAC?????TATTATTAAACGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTAA?AACTA?CTCAAGCTAAGGCTTGGTCTTGGGTTTGAG??????CTGTCCGAAATCAGTGGCGA????ATTGTTC??GACGTAGTAAAAATTTATA?CCCGTTGCAAGCGAGAATCTATTCAGCC Phialophora_botulispora CTCGCCGGGTAGACCTCCACCCGTGCTTAC?C?TACTCTTGTTGCTTTGGCGGGCC?GTGGCCTC???CACTACGGGCTCTG??????CTCGTACGTGCC??CGCCAGAGGACC??AAACTCTGAATAAGT??GATGTCTGAGAACTATTTAATA?GTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAGA?CCA?CTCACGC?CTGGCGTAGTGTTGGGGCACGCCGC?GGCCC?TCAAA?ATAGTGGCGGTGCGGGT?AGCTAAGCGTAGTA?AATCTCCTCGCTA?TAGGGTCCTCTCG?GTGGCTCGCC Phialophora_finlandia AAATGGGTTCTATTCCCAAACCGTGTATAC?AT?ACCTTTGTTGCTTTGGCAGGCC?GCCTTTTA????GGCGTCGGCTCCG?????GCTGAC???TGCGCCTGCCAGAGGACC?CAAACTCTTTTGTAGTG??ATGTCTGAGTACTATATAATA?GTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATAA?CCA?CTCAAGCCTCGGCTTGGTCTTGGGGTTCGCTCGCGGCCC?TTAAA?ATAGTGGCGGTGCCGTC?TGCTAAGCGTAGTA?ATTCT?CTCGCTA?TAGGGTCCAGGTG?ACCACCTGCC Phialophora_gregata AGCTCGGTCCTGAACTCCACCCTTGAATAA?ATTACCTTTGTTGCTTTGGCGGGCC?GCCTC??G???CGCCAGCGGCTTCG?????GCTGTTGCGTGCC??CGCCAGAGGACCACAA?CTCTTGTTTAGT??GATGTCTGAGTACTATATAATA?GTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAA?CCA?CTCAAGCTCTCGCTTGGTATTGGGGTTCGCCGC?GGCCC?CTAAA?ATAGTGGCGGTGCCTGT?CGCTACGCGTAGTA?ATACTCCTCGCGA?TTGAGTCTGGCAGGTCTACATGCC Phialophora_malorum AGGTCGGTCCTGAACTCCACCCTTGAATAA?ATTACCTTTGTTGCTTTGGCGGGCC?GCCTC??G???CGCCAGCGGCTTCG?????GCTGTTGAGTGCC??CGCCAGAGGACCACAA?CTCTTGTTTAGT??GATGTCTGAGTACTATATAATA?GTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAA?CCA?CTCAAGCTCTCGCTTGGTATTGGGGTTCGCCGCAGGCCC?CTAAA?ATAGTGGCGGTGC?TGT?CGCTACGCGTAGTA?ATACTCCTCGCGT?CTGGGTCCGGTAG?TCTACTTGCC Phialophora_melinii GTCAGCAATACCTAGGTAACCCTTGAATAA?ACTACCCTTGTTGCTTTGGCGGGTC?GCCTTTTA???GGCCAGCGGCTTCG?????GTTGTTGTGTGTCTCCGCCAGAGGACCACAA?CTCTTGTTAAGCC?GATGTCTGAGTACTATATCTTA?GTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATAA?CCA?CTCAAGCCTTCGCTTGGTATTGGGGTTCGCCGC??GCCT?CTAAA?ATAGTGGCGGTGC?TGT?CGCTACGCGTAGTA?ATACTCCTCGCGGTCTGGGTCCGGTAG??TTGCTTGCC Phialophora_sp CTCACGGGTGACTCTCCAACCCTATGTTAT?ATAACCTTTGTTGCTTTGGCGAGCCCGCCTC??????GGCCGCTGGCTTCG?????GCTAGCGAGTGCT??CGCCAGAGGACCCCAAACTCTGAATAAGT??GTCGTCTGAGTACTATATAATA?GTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCAGTACAA?C?A?CTCAAGCTCT?GCTTGGTATTGGGCCCTGCCGGCAG?CC?TTAAA?ATAGTGGCGGCGC?ATC?TGCTAAGCGTAGTA?ATACTCCTCGCTA?CAGAGTCCGTTGG??ATGCTTGCC Strumella_coryneoidea CTGC??AACTTATGGATGTTTTCTGGGGCTTGCCCCC??TTCCATTTAAATTCCCCTGTGTATCTTACCTCTGTTGCTTCCCGCAAGGCCTCTGGGTCTGGCGGGGAGGAAAACCAAAACTCTGGTTGTGTTCTTTGTCTATACACGCAAAAACAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATCAAA??????CACATCCTCAAGCTTGGTCTTGGGGGAAGACATCTCCC??CTGAAATCCTCAGCGGAAAAGCCATCACAGGTGTGATAATTACTGTTCGCCTGGTGACTTGAAGGGTGTTCCTGCTG Trichophaea_hybrida TCTGAGTACCTTTGCCTGTTGCTTCCGTAGGGCATG?????????????ACATCT?????GTCA???CTCTTGAGCTTAAAAACCTCAAGGGAGTCCTT??ACGGGAGGTATACTAAAACTCTTGCACTGTCTTCTGTCTCTTGTTTACAGCAAACATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTAAAACCCA?CTCAAGCTCTTTCTTGGTCTTGGAGGTGGAGTCCTCCCCTCGGAAATGAATGGCGGAGTCACTCGCCCCAGCGTAGTAAGTTTATCTTTTCGCTTGGTGCCGGGTG?CGTTCCAGCC Trichophaea_woolhopeia CCTGCGGAAGGATCATTAAAATGTAAATTGACCCTTTACACCCTTCTGTGTATTTT?ACCTGTTTTTGGATGATGGAATTAG???????TAAAATATTCCATAGAACAAGAATTCTAAACTATTATTCTGATATTAGTCTTTTTGTATTAATAAAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTCTAGTATTCTGGGAGGCATGCCTGTTTGAGCGTCATTAAACCTTA?CTCAAGCAGTTTCTTGGATATGAAGGAAGAAGGCTCTCCTTTGAAATGATTAGTAGATGTAAAGTTCT?GTTTTGATGTAATAGTCTTATTAGCTTAATTTGTATACAACTATATCT Wilcoxina_mikolae TCTGTGTACCTT?GCCTGTTGCTTCCATGGAG??????CCTGACTTTGGTCACTCT???????????????TGTGATGTAAATCC?CAAGGGAGTCCCC??ATGGAAGGTCATCAAAAACTCATGTATTTTCTTCTGTCTACTGTTTATAACAAATGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTAAATACCT?CTCAAGCACCATCTTGGTCATGGAAGATGAATTCTCCCTTCTGAAATTAAAGGCGGATCATCTCATCCTGGCGTAGTAAGTGTTTCTCTTTCGCTTGGAGTGTGTGACAGTCTTGCC Wilcoxina_mikolae_2 TCTGTGTACCTT?GCCTGTTGCTTCCATGGAG??????CCTGACTTTGGTCACTCT???????????????TGTGATGTAAATCC?CAAGGGAGTCCCC??ATGGAAGGTCATCAAAAACTCATGTATTGTCTTCTGTCTACTGTTTATAACAAATGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTATTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTAAATACCT?CTCAAGCACCATCTTGGTCATGGAAGATGAATTCTCCCTTCTGAAATTAAAGGCGGATCATCTCATC?TGGCGTAGTAAGTGTTTATCTTTCGCTTGGAGTGTGTGACAGTCTTGCC Wilcoxina_rehmii TCTGAGTACCTT?GCCTGTTGCTTCCATGGAG??????CCTGACACATGTCACTC????????????????TGGGGATTTACATCCCGAGGGAGCCTCC??GTGGAAGGTAATCAAAACT?CTTGAATTGTCATCTGTCTAATGTTTATAACAAATGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTAAATACCA?CTCAAGCTCTTCCTTGGTCATGGAAGAAGAATCCTCTCTTCTGAAATCAATGGCGGACTGCCTCATCCTCGCGTAGTAAGT?TCATCTTTTCGCTTGGAGTGTGAGATAGTCTCGCC Wilcoxina_rehmii_2 TCTGAGTACCTT?GCCTGTTGCTTCCATGGAG??????CCTGACACATGTCACTC????????????????TGGGGATTTACATCCCGAGGGAGCCTCC??GTGGAAGGTAATCAAAACT?CTTGAATTGTCATCTGTCTAATGTTTATAACAAATGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAA?GCGA?AAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTAAATACCA?CTCAAGCTCTTCCTTGGTCATGGAAGAAGAATCCTCTCTTCTGAAATCAACGGCGGACTGCCTCATCCTCGCGTAGTAAGT?TCATCTTTTCGCTTGGAGTGTGAGATAGTCTCGCC Xenochalara_juniperi ?????ACTCTCCAACCCTATGTT??AATAC?A??ACCTTTGTTGCTTTGGCGAGCC?GCCTC??G????GCCACCGGCACCTC????GCTGGTGAGTGCT??CGCCAGAGGACCCCAAACCCTCAATAAGT??GTCGTCTGAGTACTATATAATA?GTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCAGTACAA?C?A?CTCAAGCTCT?GCTTGGTCTTGAGCCCCGCCGGCAGGCT?TTAAA?ATAGTGGCGGCGCCCCC?TGCTAAGCGTAGTA?ATACACCCCGCTA?CAGAGTCCCGGTG?GATGCTTGCC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_Pezizales) = N: 1-443; CODONPOSSET CodonPositions (CHARACTERS = ITS_Pezizales) = N: 1-443; END; [ The following blocks are output data for analysis step 4009 ] BEGIN TREES; TITLE Tb8781; LINK TAXA = TaxaForAnalysisStep4009; TREE Fig._4 = [&R] (Phialophora_finlandia,((Cadophora_finlandia,(Chalara_microchona,(Phialophora_sp,(Phialophora_botulispora,(Phialophora_melinii,((Genea_gardnerii,(Genea_harknessii,(Pezizomycotina_isolate_DQ974752,Genea_arenaria))),(Xenochalara_juniperi,(Pezizomycotina_ex._Epipactis_atrorubens,((Pezizomycotina_spp.uncultured_14,(Pezizomycotina_ex._Epipactis_atrorubens_2,Pezizomycotina_spp._uncultured_12)),(Phialophora_gregata,(Trichophaea_woolhopeia,Phialophora_malorum))))))))))),(Cadophora_finlandica,(Pezizomycotina_ex._Epipactis_atrorubens_3,Chalara_dualis)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5023] END;