#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on October 06, 2026; 21:34 GMT TreeBASE (cc) 1994-2008 Study reference: Burke J., Bayly M.J., Adams P., & Ladiges P. 2008. Molecular phylogenetic analysis of Dendrobium (Orchidaceae) with emphasis on the Australian section Dendrocoryne and implications for generic classification. Australian Systematic Botany, 21. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2002] [ The following blocks are input data for analysis step 4136 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4136; DIMENSIONS NTAX=56; TAXLABELS Cadetia_maideniana Dendrobium_adae Dendrobium_aemulum Dendrobium_baileyi Dendrobium_bifalce Dendrobium_calamiforme Dendrobium_callitrophilum Dendrobium_canaliculatum Dendrobium_carrii Dendrobium_cunninghammii Dendrobium_ellipsophyllum Dendrobium_fairchildae Dendrobium_falcorostrum Dendrobium_finniganense Dendrobium_finniganense_pseudogene Dendrobium_fleckeri Dendrobium_fleckeri_pseudogene Dendrobium_formosum Dendrobium_gracilicaule Dendrobium_jonesii Dendrobium_kingianum_v_carnarvonense Dendrobium_kingianum_v_kingianum Dendrobium_kingianum_v_pulcherrimum Dendrobium_lancifolium Dendrobium_linguiforme Dendrobium_macrophyllum Dendrobium_monophyllum Dendrobium_moorei Dendrobium_nindii Dendrobium_pugioniforme Dendrobium_racemosum Dendrobium_schoeninum Dendrobium_smilliae Dendrobium_speciosum Dendrobium_speciosum_v_blackdownense Dendrobium_speciosum_v_boreale Dendrobium_speciosum_v_capricornicum Dendrobium_speciosum_v_carnarvonense Dendrobium_speciosum_v_curvicaule Dendrobium_speciosum_v_grandiflorum Dendrobium_speciosum_v_hillii Dendrobium_speciosum_v_pedunculatum Dendrobium_speciosum_v_speciosum Dendrobium_tetragonum_v_cacatua Dendrobium_tetragonum_v_giganteum Dendrobium_tetragonum_v_melaleucaphi Dendrobium_tetragonum_v_tetragonum Dendrobium_thyrsiflorum 'Dendrobium victoriae-reginae' Dendrobium_violaceum Diplocaulobium_ischnopetalum Epigeneium_amplum Epigeneium_cymbidioides Epigeneium_nakaharaei Epigeneium_triflorum Flickingeria_comata ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3529] TITLE Analysis_1_Matrix; LINK TAXA = TaxaForAnalysisStep4136; DIMENSIONS NCHAR=747; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Cadetia_maideniana TCGAGACCGAAACATA--TCGAGCGATTTGGAGAACCCGTTAGAT---ATGCGGCGATAATTGTTGCCGTAAAAATAAAA----CC-----ATCCCAGTTGTTG----------CCTCATCCCCTT---------------CGGG--CGGG--G--CACGATGAAGGATGGATGAACACCCAAACCGGCGCAGCTTCGCGCCAAGGAAA--TATCAAAGCACGAGCCCTTCATCGGGCTCGGTGGCACGGTG-TGCGGTCGCACGCC-GTACGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTATTTGAACGCAAGTTGCGCCCGAGGCCAACAGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCTTCCCATCAGTGGGTGGG----CGGGGGGAGGCTTGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TTATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTATCGTGCTTGCCGGAGAGAT------GAGTACAC-TTCCCAGGTGATCCCCAG-CCATGCGTCGATCCAC-GGACGACGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_adae ?????????????????????AGCGATTCGGAGAACCCGTGAGAT---ACGCGACGGCAATTGCTGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTTG----------CCTCATCCCCCTTT-------------CGGGG-CGGG--GG-CACGATGAAGGATGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAG--TATCGAAACACGAGCCCTTCATCGGGCT{CT}GGTGGCACGGGG-TGCTGTTGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCT{CT}GGCTCT{CT}GCAT{CT}GATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCGTCCCATCAATGGGTGGG----CCGGCGAAGGCTCGGATGTGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATTGCAC-TTCTCAGGTGATCCCAAA-CCATGCGTCGATCCACTGGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_aemulum TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTCAGAT---ACGCGGCGGCAATTGCCGTCGGAAAATTAGAA---TCC-----GTCCCGG{CT}CGTTG----------CCTCATCCCCTT---------------CGGGG-CTGG--GG-CACGATGAGGGAGGGACGAACACCCAAACCGGCGCAGCTTCGCGCCAAGGCAA--TATCGAAACACGAGCCCTTCATCGGGC{CT}CCGTGG-ACGGGG-TGCTGCTGCACGCC-GTACGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AGCTCCGTCCCATCAATGGGTGGGG---ACGGCGGAGGCCCGGATGTGGA{CT}AGTGGCCCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGGGCGGG--TTATCATC---TCGTCGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGT{AG}TCGTGTTTGCCGGGGAGAG------GATCACAC-TTCTCAGGCGATCCCAAA-CCATGCGCCGGTCCGT-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAGAAAAAAAAAA Dendrobium_baileyi TCGAGACCAAAATATA--TCGAGCGATTCGGAGAACCCGTTAGAT---ACGCGGCGGCGATTGCTGCCGTAGTAGAATAAAGAGCC-----ATCCCAGTTGTTG----------CCCCGTCCCCTTC--------------GGGGG-TGGG--G--CACGATGAAGGACGGATGAACACCCAAACCGGCGCAG-TTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCACCGGGCTTGGTGGCGCGGGGTGCTTGTTGCACGCC-GCATGGATTGACACAACTGTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCTCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCGTCCCGTCAATGGGTGGG----CCGGCGGAGGCTCGGATGTGGAGAGTGGCTCGTCGTGCCC-ATCGGCGCGGCGGGCTGAAGAGCGGG--TTATCGTC---TCGTTGGCCGCGAGCAA-CAAGGGGTGGATGAGAAAGCGAGGCAAGGCCTACGTTGTTGTATCGTGTTTGCCGGAGAGAC------GATTGCAC-TACTCGGGTGATCCCGAA-CCATGCGTCGGTCCAT-GGACGACGGCTTGGAATGCGACCCCAGGATGGGCAAAAAACAAAAAAA Dendrobium_bifalce TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTAAGAT---ACGCGGTGGCC{AG}TTGCCGCCGTAGAACAAAAA---GCC-----ATCCCAGTTGTTG----------CCTCATCCCCCT---------------CGGGG-CGGG--G--CACGATGAAGGATGGATGAACACCCAAACCGGCGCAGCATCGCGCCAAGGGAA--TATCGAAGCACGAGCCCTTCGTCGGGCTTGGTGGCACGGGG-TGCTGCTGCACGCC-GCATGGACTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCGAGCGTTGCATCGCTCCGTGGC-GACTCCGTCCCATCGATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TTGTCATC---CCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAG-------GCAAGGCCTATGTTGTTGTGTCGTGCTTGCCAGAGGGAG------GATTGCGC-GTCTCCGTTGATCCCAAA-CCATGCGTCGATCCGC-GGACGACGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_calamiforme TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACTCGACGGCGATTGCCGTGGTAAGATAAAAA---GCC-----GTCCCGGTCGTTG----------CCTCATCCCCTTTC-------------TGGG--CGGG--GG-CGCGATGAGGGATGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TACGGAAACACGAGCCCTTCATCGGGCTCGGTGGCACGGGG-TGCTGTTGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGC-TGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCGTCCCGTCGATGGACGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--CGATCATC---TCGTTGGCCGGGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTCCCGTGTTTGCCGAAGAGAG------GATTGCGC-ATCTAAGGTGATCCCGAA-CCATGCGTCGGTCCAC-GGACGCCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_callitrophilum TCGAGATCGAAATTTA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGACAATTGCCGTCGAAAAATTAGAA---TCC-----GTCCCGGTCGTTG----------CCTCATCCCCTT---------------CTGGG-CTGG--GG-CACGATGAGGGAGGGACGAACACCCAAACCGGCGCAGCTTCGCGCCAAGGAAG--TATCGAAACACGAGCCCTTCATCGGGCTCGTTGGCACGGGG-TGCTGCTGCACGCC-GTACGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAA{AG}AAC{AG}CAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGTCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AGCTCCGTCCCATCAATGGGTGGGG---ACGGCGGAGGCCCGGATGTGGAGAGTGGCCCGTCGTGCCC-GTCGGTGCGGCGGGCTGAAGAGCGGG--TAATCATC---TCGTCGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGGGAGAG------GATCACAC-TTCTCAGGCGATCCCAAA-CCATGCGCCGGTCCGT-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAGAAAAAAAAAA Dendrobium_canaliculatum TCGAGACCGGAATATA--TCGAGCGATTCGGAGAACCCGTCATAT---ACGCGGCGGCAATCGCTGCCGTAAGATAAAAAA--GCC-----ATCCCGGCTGTTG----------CCTCATCCCCTT---------------CGGGGGCGGG--G--CACGATGAAGGATGGACGAACACCCAAACCGGCGCAGCGTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGTGGCACGGGG-TGCTGTTGCACGCC-GCCTGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTCGCATCGCTCCGTGCC-AACTCCGTCCCATCATTGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCCCATCGGTGCGGCGGGCTGAAGAGCGGG--TTGCGATC---TCGTTGGCCGCGAACAA-CAAGGGGAGGATGGGA-------GCAAGGCCTAC{CGT}TTGCTGTATCGCGCTCGACAGAGAGAG------GATCGCAC-CCCTCAGGTGATCCCAAA-CCATTCGTCGGTCCACGGGACGACGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_carrii TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTCAGAT---ACACGACGGCAATTGCCGTCGTAAGATAAACT---GCC-----GTCCCCGCCGTCG----------CCTCATCCCCTT---------------CGGGG-CGGG--GG-CACGGTGAAGGATGGACGAACACCCAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAATACGAGCCCTTCATCGGGCTCGGTGGCACGGGG-TGCTGCGGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCT-GACGCCGTCCCATGAATGGGCGGG----CCGGCGGAAGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGGGGTGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTATCGTGTCTGCCAGAGAGAG------GATCGCAC-TTCTCAGGTGATCCCGAA-CCATGCGTCGGCGCGT-GGTCGACGGCTTGGAATGCGACCCCAGGATGGGCAAAAGAAAAAAAAA Dendrobium_cunninghammii TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTCAAAC---AAGCGGCGGCAATTGCTGCCGTA---TAGAAA---GCC-----GTCCCAGTTGTTG----------CCTCATCCCCTTT---------------GGGGGCGGG--GG-CACGATGAAGGACGGATGAACACTCAAACCGGCGCAGCTTTGCGCCAAGGGGA--TATTGAAACACGAGCCCTTCATCGGGTTCGGTGGCATGGTGTGCTCGTTGCACGCC-ATATGGATTGACACGACTCTCGACAAAGGATTTCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCGAGGGCACGTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCATCCCATCAATAGGTGGG----CCGGCGAAGGCTCGGATGTGCAGAGTGGCTCGTCGTGCCC-CTCGGTGCGGCGGGCTGAAGAGTGGG--TTATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGAGCTAAT-------CGAGGCCTACGTCGTTGTATCGTGTTTGCCCGAGACAA------GATTATAC-TT-TCAGGTGATCCCAAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGGTGGGCAAAAAAAAAAAAAA Dendrobium_ellipsophyllum TCGAGACCGAAATACA--TCGAGCGATTTGGAGAACCCGTCAAAG--TAAGCGGTGGCTATCGTTGCCACG--ATGAAA----GCC-----ATCCCAGACGCTG----------CCTCATCCCCTT----------------GGGG-GCGGGGAG-CGTGATGAAGGATGGATGAACACTCAAATCGGCGCAGCGTCGCGCCAAGGGAA--TGTCGAAACACGAGATCACCAATGGGTCTGGTGGCATGGGGTGCTTGTTGCACGCCATAC-GGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAGGCCAACCGGCCAAGGGCACGTCTGCCTGGGCGTCAAGCGTTACGTCACTTCGTGTC-AGCTCCATCCCATCGAAGGATGGG----CTGGTGAAGGCTCGGATGTGCAGGGTGGCTCGTCGTGCCC-CTCGGTGCGGCGGGCTGAAGGGCGGG--TCTTCATC---TCGTCGGCCGCGAACAA-TAAGGGGTGGATT-AAAT------CGAGGCCTGTGCTATTGTGTCGTGTGCGCCCGAGAGGA------GATCATATGTTATCGGGTGATCCCAAA-TCATGCGTCGATCCAC-GGATGGCGCTC-GGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_fairchildae TCGAGATCGAAATATA--TCGAGTGAATTAGAGAACCGGTCAAAA--TAAGCGGCGGCTATTTTATCCGCT--ATAAAA----GTC-----ATCCCATTTGTCA----------ACTCATCCCCTT----------------GGGG-CGAGG-T--TGTGAATAGGGGTGGATGAACACTTAAATTGGCGCAACATCGCGCCAAGGGATA-TATCAAAAAGCAAGCCCTCAAATGGGTTTCGTGTAATGGGG-TGCTATTTTATGCCCTAG-GGATTGACATGACTCTCGGCAATGGATATCTTGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAATCTTTGAACGCAAGTTGCGCCCGAGGTCAAACGGCCAAGGGCACGTCTGCCTGGGCGTCAAGCATTATGTCGCTCCGAGTC-AGTACCATATCATCGATGGATGGG----CTGGAAAAGGCTTGGATGTGCAGAGTGGCTCATCGTTCCC-CTCGGAGCGGTGGGCTGAAGAGCGGG--TCTTCATC---TTGTTGGCTGCGAACAA-TAAGGGGTGGATT-AAAA------TGAGTCCTGTGTTATTGTAACGTGTATGCCTGAGATAA------GATTATACATATCTAGATAATCCCAAA-TCAGGCGCCGATCCAT-GGATGGCGTTTT-GAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_falcorostrum TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGACGGCAATTGCCGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTTG----------CCTCATCCCCTTTTT-------------GGGG-CGGG--GGACACGACGAAGGATGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGTGGCACGGGG-TGCTGTTGCACGCC-GTATGGATTGAAACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCGGTCCCATCAATGGGTGGG----CCGGCGGAGGGTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGCGTTTGCCGGAGAGAG------GATCGCAC-TTCTCAGGTGATCCCGAA-CCATGCGTCGATCCAC-GGACGACGGCTTGGAATGCGACCCCAGGATGG??AAAAAAAAAAAAAA Dendrobium_finniganense TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGACGGCAAATGCTGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTTG----------CCTCATCCCCCTTT-------------CGGGG-CGGG--GG-CACGATGAAGGATGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAG--TATCGAAACACGAGCCCTTCATCGGGCT{CT}GGTGGCACGGGG-TGCTGTTGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCAT{CT}GATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AGCTCCGTCCCATCAATGGGTGGG----CCGGCGGAGGCTCGGATGTGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGT{CG}GTGTTTGCCGGAGAGAG------GATCGCAC-TTCTCAGGTGATCCCAAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGA?????AAAAAAAAAAAAAA Dendrobium_finniganense_pseudogene TCGAGATTGAAATATA--TCGAGCAATTTGGAAAACCCGTGAGAT---ACG{CT}GACGATAATTACTAT{CT}GTAAGATAAAAAA---CC-----ATCCCGATCGTTT----------CCTTATCCCCTTTTT-------------G{GT}G--CGGG--GG-CACAATGAAGGATGGATGAACAAACAAATTGGCACAGCTTCACGCCAAGGGAG--TATCAAAACATAAGCCTTTCATCGGGCTTGGTGGCACGGGG-TTCTGTTGCACGCC-GTATGGATTGGCATGACTTTCGGCAATGGATATCTCAGCTCT{CT}GCATCGATGAAGAGCGCAGTGAAATGTGATGC{AG}TGGTGGGAATTACAAAATCCTACGAACCATCGAGTCTTTGAATGTAAGTTGCGCCCGAGGCCAATCGGCCGAGGGCACTTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCATCCCATCTATGGGTGGG----CTGGCAGAGGCTCGGATGTGGAGAGTGGATCATCGTGCCC-ATCGATGCGGCTGGCTGAAGAGCGGG--TGATCATC---T{CT}GTTGGCCGTTAACAA-TAAGGGGTGGATGAAA-------GAAAGGCCTAC{AG}TTGTTGTGTCGTGTTTGCCGGAGAGAG------GATTGCAC-{GT}T{AC}TCAGGTGATCCCAAA-CCTTGCGTCAATCCAA-GGATGGCGGTTTGGAATGCAACCTCAG???????AAAAAAAAAAAAAA Dendrobium_fleckeri TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGACGGCAATTGCTGTCGTAAGATAAAAA---GC{CT}-----GTCCCGGTCGTTG----------CCTCATCCCCCTTT-------------CGGGG-CGGG--GG-CACGATGAAGGATGGATGAACAAACCAACCGGCGCAGCTTCGCGCCAAGGGAG--TATCGAAACACGAGCCCTTCATCGGGCTCGGTGGCACGGGG-TGCTGTTGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCAT{CT}GATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCGTCCCATCAATGGGTGGG----CCGGCGGAGGCTCGGATGTGGAGAGTGGCTCGTCGTGCCC-ATCG{AG}TGCGGCGGGCTGAAGAGCGGG--TGATCATC---T{CT}GTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATTGCAC-TTCTCAGGTGATCCCAAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGG??AAAAAAAAAAAAAA Dendrobium_fleckeri_pseudogene ?????????????????????????????GGAGAACCCGTGAGAT---ACGCTACGGC{AG}{AG}TTGC{AT}GTTGTAAGATAAAAA---GCC-----{AG}TCCCG{AG}TCATTG----------CCTCATC{CT}CCTTTT-------------GGGGC-{AG}GGG--G--CATGATGAAGGATGGATGAACAAA{CT}AAAA{CT}GGCGCAGCTTC{AG}CGCCAAGGTAG--TATCAAAACACGAGCCCTTCATT{AG}GGCT{CT}GATGGCACAGGG-TGCTGTTGCACGCC-GTATGGATTGACA{CT}GACTCTCAACAATGGATATCT{CT}GGCTCTAGCATCGATGAAGAGCACAG{CT}AAAATGTGATACGTGGTG{CT}GAATTGTAGAATCCTGTGAACCATTGAGTCTTTGAACGCAAGTTGCGCCC{AG}AGGCCAATCGGCCGAAGGCACGTCCA{CT}CTGGGCGTCAAGCGTTGCAT{CT}GCTCCGTGC{CT}-AACT{CT}TGT{AC}CCATCAATGGGTGGG----C{CT}GG{CT}AGAGGCTTGGATGTGGAGAGTGGCTC{AG}TTGTGCCC-ATCGGTGCGGCGGG{CG}TGAAGAGCGGG--TGATCATC---TCATTGGCCG{CT}{AG}AACAA-{CT}AAGGGGTGGATGAAA-------GCAAGGCCTACGATGTT{AG}T{CG}T???????????????????????????????????????????????????????????????????????????????????????????????????????AAAAAAAA?????? Dendrobium_formosum TCGAGACCGGAATACA--TCGAGCGATTTGGAGAACCCGTCAAAA--TAAGCGGTGGCTATTGCTGCCGCG--ATAAAA----TCC-----ATCCCAATCGTTG----------CCTCATCCCCTT----------------GGGG-GCGGGGA--TGCGATGAGGGTTGGATGAACACTCAAATCGGCGCAGCATCGCGCCAAGGTAG--TAACGAAACGTGAGCCCTTAAATGGGTCTTGTGGCATGGGG-TGCTATTGCACGCC-ATATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAATCGGCCAAGGGCACGTCTGCCTGGGCGTCAAGCGTTACGTCACTCCGTGCC-AACTCCATTCCATCGATGGATGGG----CCGGCGAAGGCTCGGATGTGTAGAGTGGCTCGTCGTGCCC-GTCGGTGCGGCGGGTTGAAGAGTGGG--TCATCATC---TCGTTGGCTGCGAACAA-TAAGGGGTGGATT-AAAG------CGAGACCTATGTTATTGTGTCGTGTATGCCTGAGAGAA------GACCAT????TATCAGGAGATCCCAAA-TCATGCGTCGATCCAT-GAATGGCGTTT-GGAATGCGACCCCAGGATGGGCAAAAAAAAACA??? Dendrobium_gracilicaule TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGACGGCAATTGCCGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTTG----------CCTCATCCCCTTT---------------GGGGGCGGG--GG-CACGATGAAGGATGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGTGGCACGGGG-TGCTGTTGCACGCC-GTATGGATTGAAACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCGTCCCATCGATGGGTGGG----CCGGCGGAGGGTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATGGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCAC-T{CT}CACAGGTGATCCCGAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_jonesii TCGAGACCGAAATAGA--TCGAGCGATTCGGAGAACCCGTGAGAC---ACGCGACGGCAATTGCTGTCGTAAGATAAAAAA--GCC-----GTCCCGGTCGTTG----------CCTCATCCCCTTTT--------------GGGG-CGGG--GG-CACGGTGAAGGATGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGTGGCACGGGG-TGCTGTTGCATGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-GACTCCGTCCCATCAATGGGTGGG----CCGGCGGAGGCTCGGATGTGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCGAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATTGCAC-TTCTCAGGTGATCCCAAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_kingianum_v_carnarvonense TCGAGA{CT}CGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCGATTGCTGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTCG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CACGATGAAGGATGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAAC{AG}CGAGCCCTTC{AG}TCGGGCTCGGTGGCACGGGG-TGCAGTTGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCGTCCCATCGATGGGTGGG----CCGGCGGAGGGTCGGATGTGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--CGATCATC---TCGTTGGCCGCGAGCAA-C{AGT}AGGGGTGGATGAAA-------GC{AGT}AGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCAC-TTCTCAGGTGATCCCAAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_kingianum_v_kingianum TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCGGTGAGAT---ACGCGGCGGCGATTGCCGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTCG----------CCT{CG}ATCCCCTTT--------------CGGGG-CGGG--GG-CACGA{CT}GA{AG}GGATGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCGTCGGGCTCGGTGGCACGGGG-TGCAGTTGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-AACTCCGTCCCATCGATGGGTGGG----CCGGCGGAGGCTCGGATGTGGAGAGTGGCTCGTCGTGCCC-AT{CG}GGTGCGGCGGGCTGAAGAGCGGG--CGATCATC---TCGTTGGCCGCGAGCAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGCGTCGTGTTTGCCGGAGAGAGAGAGAGGATCGCAC-TTCTCAGGTGATCCCGAA-CCATGCGTCGATCCAC-GGACGACGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAACAAAAA Dendrobium_kingianum_v_pulcherrimum TCGAGACCGAAATATA--TCGAGCGATTCGGATAACCCGTGAGAT---ACGCGGCGGCGATTGCCGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTCG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CACGG{CT}GAAGGATGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCGTCGGGCTCGGTGGCACGGGG-TGCAGTTGCACGCC-GTACGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCGTCCCATCGATGGGTGGG----CCGGCGGAGGCTCGGATGTGGAGAGTGGCCCGTCGTGCCC-GTCGGTGCGGCGGGCTGAAGAGCGGG--CGATCATC---TCGTTGGCCGCGAGCAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGCGTCGTGTTTGCCGGAGAGAGAG----GATCGCGC-TTCTCAGGTGATCCCGAA-CCATGCGTCGATCCGC-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAGAAAAA Dendrobium_lancifolium TCGAGACCGAAATGCA--ACGAGCGATTTAGAGAACCGGTCAAAA--TAAGCGGTGGCTATTATATCCGCT--ATAAAA----GCC-----ATCCCATTCGTCA----------CCTCATCCCCTT----------------GGGG-CGAGG-T--CGGGAATAGGGGTGGATGAACACTCGAACCGGCGCAACATCGCGCCAAGGGATA-TATCCAAAAGAGA-CCCTTAAATGGGTTTCGTGGCAAGGGG-TGCTGTTGCACGCCTTAA-GGATTGACATGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAAACGGCCAAGGGCACGTCTGCCTGGGCGTCAAGCATTGCGTTGCTCTGAGTC-AACACCGTCCCATCGATGGATGGG----CTGGCAAAGGCTTGGATGTGCAGAATGGCTCATCGTTCCC-CTCGGAGCGGTGGGCTGAAGAGCGGG--TCATCGTC---TCGTTGGCTGCGAACAA-TAAGGGGTGGATT-AAAT------CGAGTCCTGTGTTATTGTCTCGCGTATGCATGAGAGAA------GATTATATATATTCAGGTGATCCCAAA-TCATGCGCCGATCCAT-GGATGGCGTTTT-GAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_linguiforme TCGAGACCGAAACATA--TCGAGCGATTCGGCGAACCCGTGAGAT---ACGCGACGGCAATTGCCGTCGTAAGATTAAAAAAATCC-----GCCCCGGTCGTTG----------CCTCATCCCCTT--------------GGGGGG-CGGG--G--CACGATGAGGGATGGATGAACACCCAAACCGGCGCAGCTTCGCGCCAAGGGAAAATATCGAAACACGAGCCCTTCGTCGGGCTCGGTGGCACGGGG-TGCTGTTGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGGC-AGCTCCGTCCCATCAATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--CGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAGA-------GCAAGGCCTACGTTGTTGTGCCGCGTTTGCCGGAGAGAG------GATCGCAC-TTCTCAGGTGATCCCATA-CCATGCGTCGATCCAC-GGACGACGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_macrophyllum TCGAGACCGGAATATA--TCGAGCGATTCGGAGAACCCGTAAGAT---ACACGGTGGCCATTGCCACCGTAAAATAAAAA---GCC-----ATCCCAGTTGCTG----------CCTCATCCCCTT---------------CGGGG-CGGG--G--CACGATGAAGGATGGATGAACACCCAAACCGGCGCAGCATCGCGCCAAGGGAA--TATCGAAACACGGGCCCTTCATCGGGCTTGGTGGCGCGGGG-TGCTGTGGCACGCC-GCATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCGCGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACCCCGTCCCATCCATCAGTGGGTGGGCGGGCGGAGGGTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATGGGCGCGGCGGGCTGAAGAGCGGG--TTATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCCGCGTTGTTGTATCGTGCTGGCCGGAGAGAG------GATTACGC-TTCTCAGGTGATCCCAAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_monophyllum TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTCAGAT---ACACGACGGCAATTGCCGTCGTAAGATAAACA---GCC-----GTCCCCGTCGTCG----------CCTCATCCCCTT---------------CGGGG-CGGG--GG-CACGATGTAGGATGGACGAACACCCAAACCGGCGCAGCTTCGCGCCAAGGGAAAATATCGAAACACGAGCCCTTCATCGGGCTCGGCGGCACGGGG-TGCTGT-GCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-GACTCCGTCCCATGAATGGGTGGA----CCGGCGGAGGCACGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATCAACTCGTTGGCCGCGAGCAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTCTGCCAGGGAGAG------GATTGAAC-TTCTCAGGCGATCCCAAA-CCATGCGTCGGTCCAACGGACGACGGCTTGGAATGCGACCCCAGGATGGGCAAACACAAAAAAAA Dendrobium_moorei TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCGATTGCTGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTCG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CACGATGAAGGATGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCGTCGGGCTCGGTGGCACGGGG-TGCAGTTGCACGCC-GTCTGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCGTCCCATCGATGGGTGGG----CCGGCGGAGGCTCGGATGTGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGGGCGGG--CGATCATC---TCGTTGGCCGCGAGCAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGCGTCGTGTTTGCCGGAGAGAG------GATCGCAC-TTCTCAGGTGATCCCAAA-CCATGCGTCGATCCAC-GGACGACGGCT???????????????????????AAAAAAAAAAAAAA Dendrobium_nindii TCGAGACCGTAATGTA--TCGAGCGATTCGGTGAACCCGTCATAT---ACACGGCGGTAATCGCTGCCGTAAGATAAAAA---GCCCTCCCATCCCAGCTGTTG----------CGTCATCCCCTTC-------------GGGGGG-CGGG--G--CACGATGAAGGATGGACGAACACCCAAACCGGCGCAGCATCGCGCCAAGGGAA--TATCGAAACACGGGCCCTTCATCAGGCTTGGTGGCACGGGGGTGCTGTTGCACGCC-GCGTGAATTGAAACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTACC-AACTCCGTCCCATCGATGGGTGGG----CCGGCGGAGGCTCGGATGTGGAGAGTGGCTCGTCGTGCCCCATCGGTGCGGCGGGCTGAAGAGCGGG--TTATCATC---TCGTTGGCCGCGAACAA-CAAGAGGTGGATGGGA-------GCAAGGCCTACGTTGTTGTATCGTGCTTGCCAGAGGGAG------GATTACAC-CCCTCGGGTGATCCCGAA-CCATGCGTCGGTCCACGAGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_pugioniforme TCGAGACCGAAATATTTATCGAGCGATTCGGAGAACCCGTGAGGA---ACGCGACGGCAATTGCCGTCGTAAGATAAAAA---TCC-----GCCCCGGTCGTTG----------CCTCATCCCCTTT--------------CGGGG-CAGG--GG-CACGATGAGGGATGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGAGA--TACGGAAACACGAGCCCTTCATCGGGCTCGGTGGCACGGGG-TGCTGTTGCATGCCCGTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCGTCCCGTTAATGGGCGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--CGATCATC---TCGTTGGCCGCGTACAA-CAAGGGGTGGATGAAA-------GCGAGGCCTACGTTGTTGTGCCGTGTTTGCCGGAGAGAG------GATTGCAC-TTCTCAGGTGATCCCAAA-CCATGCGTCGATCCAC-GGGCGACGGCTTGGAATGCGACCCCAGGATGGGCCAAAAAAAAAAAAA Dendrobium_racemosum TCGAGACCGAAACATA--TCGAGCGATTCGGAGAACCCGTGATAT---ACGCGCCGGCAAATGCCGTCGTAAGATAAAAA---TCC-----GTCCCGGTCTTTG----------CCTCATCCCGTT---------------CGGGGGCGGG--GG-CATGATGAGGGATGGATGAACACCCAAACCGGCGCAGCTTCGCGCCAAGGGAAAATATCGAAACATGAGCCCTTCATCGGGCTCGGTGGCACGGGG-TGCTGTTGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCTGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-AACTCTGGCCCATCAATGGGTGGG----CCGGCGGAGGGTCGGATGCGGAGAGTGGCCCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCAGG--CGATCATC---TCGTTGGCCGTGAACAA-CAAGGGGTGGATGAGAGA-----GCAAGGCCTACATTGTTGTGTCGCGTTTGCCGGAGAGAG------GAT{CT}GCAC-TTCTCAGGTGATCCCATA-CCATGCGTCGGTCCAC-GGATGACGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_schoeninum TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGACGGCGAAAGCCGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTTG----------CCCCATCCCCTTT--------------CGGGG-CGGG--GG-CGCGATGAGGGACGGATGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TACGGAAACACGAGCCCTTCATCGGGCTCGGTGGCACGGGG-TGCTGTTGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AACTCCGTACCGTCAATCGGCGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--CGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGCCGTGTTTGCCGGAG{AG}GAG------GATCGCGC-CTCTCAGGTGATCCCGAA-CCATGCGTCGGTCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGG??AAAAAAAAAAAAAA Dendrobium_smilliae TCGAGACTGAACTATATACCGAGCGATTTAGAGAACCGGTCAAAA--TAAGTGGTTGCTA????????GCT--ATAAAA----GCC-----ATCCCATTCTTCA----------CCTCATCCCTTT----------------GGCC--GAGGT---CATGAATATGGGTGGATGAACATTCAAACCGGCGCAACATCGCGCCAAGGGATA-TATCCAAAAGCGAGCTCTTAAATGGGTTTGGTGGCATAAGG-TGCTTTTGCACGTCCTCA-GGATTGACATGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAGGTCAAATGGCCAAGGGCACGTCTACCTGGGCGTCAAGCATTTCGTCGCTCTAAGTC-AACACCATCCCATCGATGGATAGG----CTAGCAAAGGCTTGGATGTGCAAAGTGGCTCATCATTTCC-TTCGGAGTGGTGGGCTAAAGAGCGGG--TCATCTTC---TCGTTGGCTGCGAACAA-TAAGGGGTGGATTAAAA-------TGAGTCACGCGCTATTGTCTCGCGTATGCCTGAGAGAA------GATTATATATATTTATGTGATCCAAAA-TCATGCGTCGATCCAT-GGATGGCGTTTT-GAATATGACCCCAGGATGGGCCCAAAAAAAAAAAA Dendrobium_speciosum TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCAATTGCCGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTGG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CGCGACGGAGGATGGACGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGCGGCACGGGG-TGCAGTTGCACGCC-GTACGGATTGAAACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-GACTCCGTCCCATGAATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCAC?????????TGATCCCGAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAAT-CGCCCCCAGGATGGGCAAAAAAAAA?C??? Dendrobium_speciosum_v_blackdownense TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCAATTGCCGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTGG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CGCGACGGAGGATGGACGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGCGGCACGGGG-TGCAGTTGCACGCC-GTACGGATTGAAACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-GACTCCGTCCCATGAATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCAC?????????TGATCCCGAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAA?C??? Dendrobium_speciosum_v_boreale TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGACGGCAATTGCCGACGTAAGATAAAAA---GCC-----GTCCCGGTCGTCG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CACGATGAAGGACGGACGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCGTCGGGCTCGGTGGCACGGGG-TGCAGTTGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-AACTCCGTCCCATCAATGGGTGGG----CCGGCGGAGGCTCGGATGTGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGTCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCGC-TTGTCAGGTGATCCCGAA-CCATGCGTCGATCCAC-GGACGACGGCTTGGAATGCGACCC??????????AAAAAAAAAAAAAA Dendrobium_speciosum_v_capricornicum TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCAATTGCCGTCGTAAGAT{AG}AAAA---GCC-----GTCCCGGTCGTGG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CGCGACGGAGGATGGACGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGCGGCACGGGG-TGCAGTTGCACGCC-GTACGGATTGAAACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-GACTCCGTCCCATGAATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCAC?????????TGATCCCGAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAA?C??? Dendrobium_speciosum_v_carnarvonense TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCAATTGCCGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTGG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CGCGACGGAGGATGGACGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGCGGCACGGGG-TGCAGTTGCACGCC-GTACGGATTGAAACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-GACTCCGTCCCATGAATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCAC?????????TGATCCCGAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAA?C??? Dendrobium_speciosum_v_curvicaule TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---GCGCGGCGGCAATTGCCGTCGTAAGAAAAAAA---GCC-----GTCCCGGTCGTGG----------CC{AT}CATCCCCTTT--------------CGGGG-CGGG--GG-CACGATGGAGGATGGACGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGCGGCACGGGG-TGCAGTTGCACGCC-GTATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-GACTCCGTCCCATCAATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCGC-TTCTCAGGTGATCCCGAA-CCATGCGTCGATCCAC-GGACGACGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_speciosum_v_grandiflorum TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCAATTGCCGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTGG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CGCGACGGAGGATGGACGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGCGGCACGGGG-TGCAGTTGCACGCC-GTACGGATTGA{AC}ACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-GACTCCGTCCCATGAATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCAC?????????TGATCCCGAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAA?C??? Dendrobium_speciosum_v_hillii TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCAATTGCCGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTGG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CGCGACGGAGGATGGACGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGCGGCACGGGG-TGCAGTTGCACGCC-GTACGGATTGAAACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-GACTCCGTCCCATGAATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCAC?????????TGATCCCGAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGG--AAAAAAAAA?C??? Dendrobium_speciosum_v_pedunculatum TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGACGGCAATTGCCGACGTAAGATAAAAA---GCC-----GTCCCGGTCGTCG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CACGATGAAGGACGGACGAACAAA{AC}AAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCGT{CT}GGGCTCGGTGGCACGGGG-TGCAGTTGCACGCC-GTATG{AG}ATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-AACTCCGTCCCATCAATGGGTGGG----CCGGCGGAGGCTCGGATGTGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGTCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCGC-TTGTCAGGTGATCCCGAA-CCATGCGTCGATCCAC-GGACGACGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_speciosum_v_speciosum TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCAATTGCCGTCGTAAGATAAAAA---GCC-----GTCCCGGTCGTGG----------CCTCATCCCCTTT--------------CGGGG-CGGG--GG-CGCGACGGAGGATGGACGAACAAACAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCTCGGCGGCACGGGG-TGCAGTTGCACGCC-GTACGGATTGAAACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCATCGCTCCGCGCC-GACTCCGTCCCATGAATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGCGGG--TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCAAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGAGAG------GATCGCAC?????????TGATCCCGAA-CCATGCGTCGATCCAC-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAA?C??? Dendrobium_tetragonum_v_cacatua TCGAGACCGAAAAATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCAGTTGCCGTCGTAAGATAAAAC---GCC-----GTCCCGGTCGTTG----------CCCCATCCCCCTT--------------GGGGG-CGGG--GG-CACGATGAAGGACGGATGAACAAACAAACCGGCGCAGCATCGCGCCAAGGGAA--TATCGAAACACGAGCCCTCGATGGGGCTCGGTGGCACGGGG-CGCTGTTGCGCGCC-GTGCGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-GAGTCCGTCCCATCAATGGGTGGG----CCGGCGGAGGGTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ACGGGTGCGGCGGGCTGAAGAGCGGGG-TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCGAGTCCTGCGTTGTTGTGTCGTGTTTGCCGGAGGGAG------GATGGCGC-CTCTCGGGTGATCCCGAA-CCATGCGTCGGTCCAG-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAACAAAAAAAAA Dendrobium_tetragonum_v_giganteum TCGAGACCGAAAAATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCAGTTGCCGTCGTAAGATAAAAC---GCC-----GTCCCGGTCGTTG----------CCCCATCCCCCTT--------------GGGGG-CGGG--GG-CACGATGAAGGACGGATGAACAAACAAACCGGCGCAGCATCGCGCCAAGGGAA--TATCGAAACACGAGCCCTCGATGGGGCTCGGTGGCACGGGG-TGCTGTTGCGCGCC-GTGCGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCATGACTCCGTCCCATCAATGGGTGGG----CCGGCGGAGGGTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ACGGGTGCGGCGGGCTGAAGAGCGGGG-TGATCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCGAGTCCTGCGTTGTTGTGTCGTGATTGCCGTAGGGAG------GATGGCGC-CTCTCGGGTGATCCCGAA-CCATGCGTCGGTCCAG-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAACAAAAAAAAA Dendrobium_tetragonum_v_melaleucaphi TCGAGACCGAAAGATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCGATTGCCGTCGTAAGATAAAAC---GCC-----GTCCCGGTCGTTG----------CCTCATCCCCCCAT------------TCGGGG-CGGG--GG-CGCGATGAAGGACGGATGAACAAACAAACCGGCGCAGCATCGCGCCAAGGGAA--TATCGAAACACGAGCCCTCGATCGGGCTCGGCGGCGCGGGG-TGCTGTTGCACGCC-GTGCGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-GACTCCGTCCCATGAATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ACCGGTGCGGCGGGCTGAAGAGCGGGG-CGATCATC---TCGTCGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCGAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGGGAG------GATGGCAC-CTCTCGGGTGATCCCGAA-CCATGCGTCGGTCCAG-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAACAAAAAAAAA Dendrobium_tetragonum_v_tetragonum TCGAGACCGAAAGATA--TCGAGCGATTCGGAGAACCCGTGAGAT---ACGCGGCGGCGATTGCCGTCGTAAGATAAAAC---GCC-----GTCCCGGTCGTTG----------CCTCATCCCCCCAT------------TCGGGG-CGGG--GG-CGCGATGAAGGACGGATGAACAAACAAACCGGCGCAGCATCGCGCCAAGGGAA--TATCGAAACACGAGCCCTCGATCGGGCTCGGCGGCGCGGGG-TGCTGTTGCACGCC-GTGCGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCGAGGGCACGTCCACCTGGGCGTCAAGCGTTGCATCGCTCCGTGCC-GACTCCGTCCCATGAATGGGTGGG----CCGGCGGAGGGTCGGATGCGGAGAGTGGCTCGTCGTGCCC-ACCGGTGCGGCGGGCTGAAGAGCGGGG-CGATCATC---TCGTCGGCCGCGAACAA-CAAGGGGTGGATGAAA-------GCGAGGCCTACGTTGTTGTGTCGTGTTTGCCGGAGGGAG------GATGGCAC-CTCTCGGGTGATCCCGAA-CCATGCGTCGGTCCAG-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAACAAAAAAAAA Dendrobium_thyrsiflorum TCGAGACCAAAATAAA--TCGAGCGATTTGGAGAACCGGTCAAAA--TAAGCGGTGATTATTATTTCCGTG--ATGAAC----GCC-----ATCCCAGTCGTTA----------CCTCATCCCCTT----------------GGGT-GGAGGA---TGCGAGTAAGGATGGATGAACACTCAAGCCGGCGCAGCATCGCGCCAAGGGAAA-TATCGAAACATGAGCCCTTAAATGGGTTTGGTGGAATGGGG-TGCTGTTGCACGCCATAT-GGATTGACATGACTCTCGGCAATGGATATCTCGGCTCACGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACTGGCCAAGGGCACGTTTGCCTGGGCGTCAAGCGTTATGTCGCTTCGTGTC-AACTCCATCCCGTCGATGTATGGG----CTGGCGAAGGCTCGGATGTGCAGAGTGGCTCATCGTGCCC-CTCGGTGCGGCGAGCTGAAGAGCGGG--TCATCATC---TCGTTGGCTGCGAACGA-TAAGGGGTGGATT-AAAG------CGAGGCCTATGTTATTGTGTCGTGTATGCTCGAGAGAA------GATTATACATACTCAGGAGATCCCAAA-TCATGCGTCGATCAAA-GGATGGCGCTT-GGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA 'Dendrobium victoriae-reginae' TCGAGACTGAAATACA--TCGAGCGATTTAGAGAACCGGTCAAAA--TAAGCGGTGGCTATTATATCCGCT--ATAAAA----GCC-----ATCCCATTTTTCA----------CCTCATCCCCTT----------------GGGG-CGGGG-T--CGTGAATAGGGGTGGATGAACACTCAAACCGGCGCAACATCGCGCCAAGGTA---TATCAAGAAGCGAGCCTTCAAATGGGTTTCGTGGCATGGGG-TGCTGTTGCACGCCCTAA-GGATTGACATGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATATGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCTAACAGCCAAGGGCACGCCTGCCTGGGCGTCAAGCATTATGTTGCTCCGAGTC-AGCACCATGCCATCGTTGGATGGG----TTGGCAAAGGCTTGGATGTGCAGAGTGGCTCATCGTTCCC-CTCGGAGCGGTGGGCTGAAGAGTAGG--TCATCATC---TCGTTGGCTGCGATCAA-TAAGGGGTGGATT-AAAA------TGAGGCCTATGTTATTGTCTCGTGTATGCCTGAGAGAA------GATTATACATATTAATGTGATCCCAAA-TCATGCGCCGATCCAT-GGATGGCGTTTT-GAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA Dendrobium_violaceum TCGAGATTGAAATACA--TCGAGTGATTTAGAGAATTTGTCAAAA--TAAGCGGTCGTTATTATATCCGCT--ATAAAA----TTC-----ATCCCATTCATCA----------CCTCATCCCTTT----------------GAGG-CAAGG-T--TGTGAATGGGAGTGATTAAACACTCAAACCGGCGTAACATCGCGCCAAGGTATA-TAACCAAAATCGAGACCTTGAATGGGTTTTGTG??????????????????????????????????GCATGACTCTCGGCAATGGATATCTCGGCTCTCACATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAGGCCAAACAGCCAAGGGCACGTTTGCCTGGGCGTCAAGCATTGTGTCACTCCGAGTC-AATACCATCCCATCGATGGATGTG----CTGGCAAAGGCTTGGATGTGCAGGCTGGCTCATCGTTCCC-ATTAGAGCGGTGTGCTGAAGAGTTAG--TCATCATC---TCATTGGCTGCGAATAG-TAAGGGGTGGGTTTAAAA------CGAGTCCTA??TTATTATCTCGTGTATGCTTGAGGAAA------GATTATATATTTTCAAGTTATCCAAAA-TTATGCGCCGATTCAT-GGATGACATTTT-GAATGCGACCCCAGGATGGGCAACAAAACAAAAAA Diplocaulobium_ischnopetalum TCGAGACCGGAATATA--TCGAGCGATTCGGAGAACATGTCAGAT---GCGCGGCGGCAGTCGCCGCCGCAGAATAAAAAGCCGTCC----ATCCCGGTCGTCG----------CCTCGTCCATCCCCT-----------GCGGGGCGGGGCGGGGCGCGACGAAGGATGGATGAACACCAAAACCGGCGCAGCATCGCGCCAAGGGAA--TATCGAAACACGAGCCCTTCATCGGGCACGGTGGCGCGGGG-TGCTGTTGCACGCC-GCATGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACAGGCCGAGGGCACGTCCGC-TGGGCGTCAAGCGTTGCATCGCTCCGTGCC-AGCTCCGTCCCATCCACGGGTGGG----CGGGCGGGGGCTCGGATGCGGAGAGTGGCTCGTCGTGCCC-GACGGCGCGGCGGGCTGAAGAGCGTG--CTATCATC---TCGTTGGCCGCGAACAAGCAAGGGGTGGATGGAAA------GCGAGGCCCGCGTTGCTGTGTCGCGCGCGCCGGAGAGAGGATG--GATTGCAC-TTCTCAGGTGATCCCGAA-CCATGCGTCGGTCCAC-GGACGACGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAATAAAAA Epigeneium_amplum TCGAGACCGGAACATA--CGGAGCGAATCTGAGAACCCGTGAAAT---AAGCGGCGGCGGTTGCCGGCGCG----AAAAA---GCC-----GTCCCATTCGTTG----------CCTCGTCACTCT-----------------GGG-GCGG--GAA-ACGATGAAGGATGGATGAACACCCAAACCGGCGCAGCTCCGCGCCAAGGTAA--TATCGAAACACGAGCCCTTCACCGGGTTCGGTGGCATGGGG-TGCTGTTGCACGCC-ATGTGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCAAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGCCGCTCCGTGCC-AACTCCGGCCC-CCCACGGGTGTG----TCGGGGGAGTCCCGGATGTGCAGAGTGGCCCGTCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGTGGG--TTATCGTC---TCGTTGGCCACGAACAA-CAAGGGGTGGAAGAAA-------ACAAGGCCTGTGTTGTTGTATCGTGCTTGCCAGTGGGAA------GATCA?????AACCAGGAGATCCCGAC-CCATGCGTCGGCCCAA-GGGCGACG-CTTGGAATGCGACCCCAGGATGGGCAAAAAAAAA?AC?? Epigeneium_cymbidioides TCGAGACCGAAAGAAA--CGGAGTGATTCGAAGAACCCGTGAAAT---AAGCGGCGGCGGTTGCTGACGCG----AAAAA---GCC-----GTCCCATTCGTTG----------CCTCACCACTTT------------------GG-CGGG--GAA-ATGATGAAGGATGGATGAACACTCAAACCGGCGCAGCTCCGCGCCAAGGGAA--TATTGAAACACGAGCCCTTCATCGGGTTTGGTGGCATGGGG-TGCTGCTGCACGCC-ATCTGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCAAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCC-AACTCCAACCC-CCAATGGGTGTG----TCGGGGAAGGCTCGGATGTGCAGAGTGGCTCATCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGTGGG--TTATCGTC---TCATTGGCCACGAACGA-CAAGGGGTGGATGAAA-------GCGAGGCCTGTGTTGTTGTATCGTGTTTGCCTGTGGGAA------GATCAT??ATATCCAGGTGATCCCAAC-CCATGCGTCGATCAAC-GGGCGACG-CTTGGAATGCGACCCCAGGATGGGCAAAAAAAAA?A??C Epigeneium_nakaharaei TCGAGATCGAAATATA--CAGAACGAATCCGAGAACCCGTGAAAT---AAGCGGTGGCGGTTGCCGACGCG----AAAAA---GCC-----GTCCCATTCGTTG----------CCTCACCCCTTT-----------------GGG-CGGG--GAA-ACGATGAAGGATGGATGAACACTCAAACCGGCGCAGCTTCGCGCCAAGGGAA--TATTGAAACACGAGCCCTTCATCGGGTTTGGTGGCATGAGG-TGCTGTTGCACGCC-ATGTGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCAAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTTCGTGCC-AACTCCAACCC-CCAATGGGTGTG----TCGGGGGAGGCTCGGATGTGCAGAGTGGCTCGTCGTGCCC-ATCGATGCGGCGGGCTGAAGAGTGGG--TTATCGTC---TCATTGGCCACGAATAA-CAAGGGGTGGATGAAA-------GCAAGGCCTGCGTTGTTGTATCGTGCATGCCTTCGGGAA------GATCAT?????TCCAGGTGATCCCAAC-CCATGCGTCGGCCCAC-GGGCGACG-CTTGGAATGCGACCCCAGGACGGGCAAAAAAAAA?A?C? Epigeneium_triflorum TCGAGACCGAAATATA--CGGAGTGATTCGAAGAACCCGTGAAAT---AAGCGGCGGCGGTTGCTGACGCG----GAAAA---GCC-----ATCCCATTCGTTG----------CCTCACCACTTT-----------------GGG-CGGG--GAA-ATGATGAAGGATGGATGAACACTCAAACCGGCGCAGCTCCGCGCCAAGGGAA--TATTGAAACACGAGCCCTTCATCGGGTTTGGTGGCATGGGG-TGCTGCTGCACGCC-ATATGGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAACCGGCCAAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCC-AACTCCAACCC-CCAATGGGTGTG----TCGGGGAAGGCTCGCATGTGCAGAGTGGCTCATCGTGCCC-ATCGGTGCGGCGGGCTGAAGAGTGGG--TTATCGTG---TCATTGGCCACGAACGA-CAAGGGGTGGATGAAA-------GCAAGGCATGTGTTGTTGTATCGTGTTTGCCTGTGGGAA------GATCAT??ATATCCAGGTGATCCCAAC-CCATGCGTCGATCAAC-GGGCGACG-CTTGGAATGCGACCCCAGGATGGGCAAAAAAAAA?A??C Flickingeria_comata TCGAGACCGAAATATA--TCGAGCGATTCGGAGAACAAGTCATAT---ACGCGGCGGCGATTGCCGTCGTAAGATAAAA---GGCC-----GCCTGACTCGTGG----------CCTCGCCCCCCTT--------------GGGGG-TGGG--G--CACGATGAAGGACGGACGAACACCCAAACCGGCGCAGCTCCGCGCCAAGGGAA--TATGGAGACACGAGCCCCCCAACGGGCTCGCGGGCACGGCG-CGCTGTTGCGCGTC-GCAATGATTGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCCACCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTCGCATCGCTCCGCGCC-AACTCCGTCCCATCGATGGGTGGG----CCGGCGGAGGCTCGGATGCGGAGAGTGGCCCGTCGTGCCT-ACCGGCGCGGCGGGCTGAAGAGCGGG--TTGTCATC---TCGTTGGCCGCGAACAA-CAAGGGGTGGATGAGA-------GCAAGGCCTACGTTGTTGTGTCGTTGGTGCCGGAGAGAG------GACTGCAC-TCATCGAGCGATCCCGAA-CCATGCGTCGGTCAGC-GGACGGCGGCTTGGAATGCGACCCCAGGATGGGCAAAAAAAAAAAAAA ; END; BEGIN SETS; CHARSET indel_14 (CHARACTERS = Analysis_1_Matrix) = 747; CHARSET indel_7 (CHARACTERS = Analysis_1_Matrix) = 740; CHARSET indel_10 (CHARACTERS = Analysis_1_Matrix) = 743; CHARSET indel_11 (CHARACTERS = Analysis_1_Matrix) = 744; CHARSET indel_6 (CHARACTERS = Analysis_1_Matrix) = 739; CHARSET indel_2 (CHARACTERS = Analysis_1_Matrix) = 735; CHARSET indel_9 (CHARACTERS = Analysis_1_Matrix) = 742; CHARSET indel_3 (CHARACTERS = Analysis_1_Matrix) = 736; CHARSET indel_12 (CHARACTERS = Analysis_1_Matrix) = 745; CHARSET indel_4 (CHARACTERS = Analysis_1_Matrix) = 737; CHARSET binary_indel_chars (CHARACTERS = Analysis_1_Matrix) = 734-747; CHARSET indel_13 (CHARACTERS = Analysis_1_Matrix) = 746; CHARSET indel_1 (CHARACTERS = Analysis_1_Matrix) = 734; CHARSET indel_5 (CHARACTERS = Analysis_1_Matrix) = 738; CHARSET indel_8 (CHARACTERS = Analysis_1_Matrix) = 741; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Analysis_1_Matrix) = N: 1-747; CODONPOSSET CodonPositions (CHARACTERS = Analysis_1_Matrix) = N: 1-747; END; [ The following blocks are output data for analysis step 4136 ] BEGIN TREES; TITLE Tb8908; LINK TAXA = TaxaForAnalysisStep4136; TREE Fig._3 = [&R] ((Epigeneium_triflorum,Epigeneium_cymbidioides),(((((Dendrobium_canaliculatum,Dendrobium_nindii),Dendrobium_bifalce,Dendrobium_macrophyllum,Diplocaulobium_ischnopetalum,Dendrobium_baileyi),(((Dendrobium_tetragonum_v_cacatua,Dendrobium_tetragonum_v_giganteum),(Dendrobium_tetragonum_v_melaleucaphi,Dendrobium_tetragonum_v_tetragonum)),((Dendrobium_speciosum,Dendrobium_speciosum_v_speciosum,Dendrobium_speciosum_v_blackdownense,Dendrobium_speciosum_v_capricornicum,Dendrobium_speciosum_v_carnarvonense,Dendrobium_speciosum_v_hillii,Dendrobium_speciosum_v_grandiflorum),Dendrobium_speciosum_v_curvicaule),(Dendrobium_speciosum_v_boreale,Dendrobium_speciosum_v_pedunculatum),(Dendrobium_moorei,Dendrobium_kingianum_v_kingianum,Dendrobium_kingianum_v_pulcherrimum,Dendrobium_kingianum_v_carnarvonense),(Dendrobium_racemosum,Dendrobium_linguiforme),((Dendrobium_calamiforme,Dendrobium_schoeninum),Dendrobium_pugioniforme),Dendrobium_adae,(Dendrobium_fleckeri_pseudogene,Dendrobium_finniganense_pseudogene),Dendrobium_finniganense,Dendrobium_fleckeri,Dendrobium_jonesii,Dendrobium_gracilicaule,Dendrobium_falcorostrum,(Dendrobium_aemulum,Dendrobium_callitrophilum),(Dendrobium_carrii,Dendrobium_monophyllum),Flickingeria_comata),Cadetia_maideniana),Dendrobium_cunninghammii),((((('Dendrobium victoriae-reginae',Dendrobium_fairchildae),(Dendrobium_violaceum,(Dendrobium_lancifolium,Dendrobium_smilliae))),Dendrobium_thyrsiflorum),Dendrobium_ellipsophyllum),Dendrobium_formosum)),(Epigeneium_nakaharaei,Epigeneium_amplum)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5872] END; BEGIN TREES; TITLE Tb8908; LINK TAXA = TaxaForAnalysisStep4136; TREE Fig._4 = [&R] ((Epigeneium_triflorum,Epigeneium_cymbidioides),(((((((Dendrobium_canaliculatum,Dendrobium_nindii),((Dendrobium_bifalce,Dendrobium_macrophyllum),Diplocaulobium_ischnopetalum)),Dendrobium_baileyi),((((((((Dendrobium_tetragonum_v_cacatua,Dendrobium_tetragonum_v_giganteum),(Dendrobium_tetragonum_v_melaleucaphi,Dendrobium_tetragonum_v_tetragonum)),(((Dendrobium_speciosum,Dendrobium_speciosum_v_speciosum,Dendrobium_speciosum_v_blackdownense,Dendrobium_speciosum_v_capricornicum,Dendrobium_speciosum_v_carnarvonense,Dendrobium_speciosum_v_hillii,Dendrobium_speciosum_v_grandiflorum),Dendrobium_speciosum_v_curvicaule),((Dendrobium_speciosum_v_boreale,Dendrobium_speciosum_v_pedunculatum),(((Dendrobium_moorei,Dendrobium_kingianum_v_carnarvonense),Dendrobium_kingianum_v_pulcherrimum),Dendrobium_kingianum_v_kingianum)))),(Dendrobium_gracilicaule,Dendrobium_falcorostrum)),(((Dendrobium_adae,(Dendrobium_fleckeri_pseudogene,Dendrobium_finniganense_pseudogene)),Dendrobium_finniganense,Dendrobium_fleckeri),Dendrobium_jonesii)),((Dendrobium_racemosum,Dendrobium_linguiforme),((Dendrobium_calamiforme,Dendrobium_schoeninum),Dendrobium_pugioniforme))),(Dendrobium_carrii,Dendrobium_monophyllum)),((Dendrobium_aemulum,Dendrobium_callitrophilum),Flickingeria_comata))),Cadetia_maideniana),Dendrobium_cunninghammii),((((('Dendrobium victoriae-reginae',Dendrobium_fairchildae),(Dendrobium_violaceum,(Dendrobium_lancifolium,Dendrobium_smilliae))),Dendrobium_thyrsiflorum),Dendrobium_ellipsophyllum),Dendrobium_formosum)),(Epigeneium_nakaharaei,Epigeneium_amplum)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5871] END;