#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on October 06, 2026; 13:37 GMT TreeBASE (cc) 1994-2008 Study reference: Damm U., Verkley G., Crous P.W., Fourie P., Haegi A., & Riccioni L. 2008. Paraconiothyrium species on stone fruit trees and other woody hosts, including P. variabile and P. africanum spp. nov. Persoonia, 20: 9-17. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2004] [ The following blocks are input data for analysis step 4140 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4140; DIMENSIONS NTAX=38; TAXLABELS Coniothyrium_fuckelii_AY904055 Coniothyrium_wernsdorffiae_AY904058 Helminthosporium_solani_AF163089 Helminthosporium_velutinum_AF145704 Paraconiothyrium_africanum_EU295650 Paraconiothyrium_brasiliense_AY642531 Paraconiothyrium_brasiliense_EU295632 Paraconiothyrium_brasiliense_EU295633 Paraconiothyrium_brasiliense_EU295634 Paraconiothyrium_brasiliense_EU295635 Paraconiothyrium_brasiliense_EU295636 Paraconiothyrium_brasiliense_EU295637 Paraconiothyrium_brasiliense_EU295638 Paraconiothyrium_cyclothyrioides_AY929375 Paraconiothyrium_estuarinum_AY642530 Paraconiothyrium_fungicola_AY642532 Paraconiothyrium_hawaiiense_DQ885896 Paraconiothyrium_hawaiiense_DQ885897 Paraconiothyrium_minitans_AJ293809 Paraconiothyrium_minitans_AJ293810 Paraconiothyrium_sporulosum_AJ293814 Paraconiothyrium_sporulosum_AJ293815 Paraconiothyrium_variabile_EF055359 Paraconiothyrium_variabile_EF055360 Paraconiothyrium_variabile_EU295639 Paraconiothyrium_variabile_EU295640 Paraconiothyrium_variabile_EU295641 Paraconiothyrium_variabile_EU295642 Paraconiothyrium_variabile_EU295643 Paraconiothyrium_variabile_EU295644 Paraconiothyrium_variabile_EU295645 Paraconiothyrium_variabile_EU295646 Paraconiothyrium_variabile_EU295647 Paraconiothyrium_variabile_EU295648 Paraconiothyrium_variabile_EU295649 Paraphaeosphaeria_michotii_AF250817 Paraphaeosphaeria_pilleata_AF250821 Paraphaeosphaeria_sp._AB096264 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3077] TITLE ParaconITS; LINK TAXA = TaxaForAnalysisStep4140; DIMENSIONS NCHAR=105; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 ] [ . . . . . . . . . . ] Coniothyrium_fuckelii_AY904055 ACACGTTTTGGCCCGCCGGGCCTGATTTTGACTTTCCTTGGCAACTCCATCCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Coniothyrium_wernsdorffiae_AY904058 ACACGTTTTGGCCCGCCGGGCCTGATTTTGACTTTCCTTGGCAACTCCATCCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Helminthosporium_solani_AF163089 GTGCGCCCTAAGCCCCCGCAACGGACCGCCTTACTTTCCACTTGCCTCCTTCCATAAACTCCTTTACTGACCGTTCCCTGTTCGGTCTACCCTTCAGGCCTTTAA Helminthosporium_velutinum_AF145704 ATGCTCCCAAAGCCCCCGCGACGGCCCGCTTTTCTTTCCACTTGCACCCTCCTTAAAACTTCTTTACTAACCGTCTCGTGTTCGGTCTACCCTTTAAGCCTTTAA Paraconiothyrium_africanum_EU295650 ATATGTTTCGGCCCGCCGGGCCTTCTTTTGACTTTCCTTGGCAATTCCATCTCTACTGTTCAACCGTCGTATACCCTGCTTCCTCCCCAGTGCCGCGCGACACGT Paraconiothyrium_brasiliense_AY642531 ACATGTCTCGGCTCGTCGGGCCTGATTTTGACTTTCCTCGGCAATTCCATCCCTACTGTTCAACCGTCGTATACCCTGCTGCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_brasiliense_EU295632 ACATGTCTCGGCTCGTCGGGCCTGATTTTGACTTTCCTCGGCAATTCCATCCCTACTGTTCAACCGTCGTATACCCTGCTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_brasiliense_EU295633 ACATGTCTCGGCTCGTCGGGCCTGATTTTGACTTTCCTCGGCAATTCCATCCCTACTGTTCAACCGTCGTATACCCTGCTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_brasiliense_EU295634 ACATGTCTCGGCTCGTCGGGCCTGATTTTGACTTTCCTCGGCAATTCCATCCCTACTGTTCAACCGTCGTATACCCTGCTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_brasiliense_EU295635 ACATGTCTCGGCTCGTCGGGCCTGATTATGACTTTCCTCGGCAATTCCATCCCTACTGTTAAACCGTCGTATACCCTGCTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_brasiliense_EU295636 ACATGTCTCGGCTCGTCGGGCCTGATTTTGACTTTCCTCGGCAATTCCATCCCTACTGTTCAACCGTCGTATACCCTGCTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_brasiliense_EU295637 ACATGTCTCGGCTCGTCGGGCCTGATTTTGACTTTCCTCGGCAATTCCATCCCTACTGTTCAACCGTCGTATACCCTGCTGCCTCCCCAGTGCCGCGCGACACGT Paraconiothyrium_brasiliense_EU295638 ACATGTCTCGGCTCGTCGGGCCTGATTTTGACTTTCCTCGGCAATTCCATCCCTACTGTTAAACCGTCGTATACCCTGCTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_cyclothyrioides_AY929375 ACACGTTTCGGTCCGCCGGGCCTGATTTTGACTTTCCTTGGCAATTCTATCCCTACTGTACAACCGTCGTATACCCTGTTTCCTCCTAAGGGTTGCGCGACATGT Paraconiothyrium_estuarinum_AY642530 ACACGTTTCGGTCCGCCGGGCCTGATTTTGACTTTCCTTGGCAACTCTATCCCTACTGTACAACCGTCGTATACCCTGTTTCCTCCCAAGGGCTGCGCGACACGT Paraconiothyrium_fungicola_AY642532 ATTTGTTTCGGCCCGCCGGGTACTATCTTGACTTCCCTCGGCAATTCCAAACTTACTGTTCAACCGACGTACGCCCTGCTTCCTCCCCAGGGCCCCGCGACACGT Paraconiothyrium_hawaiiense_DQ885896 ATACGTTTTGGTCCGCCGGGTCTTATTTTGACTTTCCTTGGCAATTCCATCCCTACTGTCCAACCGTCGTATACCCTGCTTCCTCCCCAGGGCCCCGCGACACGT Paraconiothyrium_hawaiiense_DQ885897 ATACGTTTTGGTCCGCCGGGTCTTATTTTGACTTTCCTTGGCAATTCCATCCCTACTGTCCAACCGTCGTATACCCTGCTTCCTCCCCAGGGCCCCGCGACACGT Paraconiothyrium_minitans_AJ293809 ATACGTCTCGGCCTGCCAGGTCTGCTTTTGACTTTCCTCGGCAACTCCGACCTTACTGTTCAACCGTCGTATACCTTGCCTCTTCCCCAGGGCTCCGCGACACGT Paraconiothyrium_minitans_AJ293810 ATACGTCTCGGCCTGCCAGGTCTGCTTTTGACTTTCCTCGGCAACTCCGACCTTACTGTTCAACCGTCGTATACCTTGCCTCTTCCCCAGGGCTCCGCGACACGT Paraconiothyrium_sporulosum_AJ293814 ACACGTCTCGGCTCGCCGGGTCTGCTTTTGACTTTCCTCGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTCGCTTCCTCCCCGGGGCTCCGCGACACGT Paraconiothyrium_sporulosum_AJ293815 ACACGTCTCGGCTCGCCGGGTCTGCTTTTGACTTTCCTCGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTCGCTTCCTCCCCGGGGCTCCGCGACACGT Paraconiothyrium_variabile_EF055359 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EF055360 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EU295639 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EU295640 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EU295641 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EU295642 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EU295643 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EU295644 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EU295645 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EU295646 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EU295647 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EU295648 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraconiothyrium_variabile_EU295649 ACATGTTTCGGCCCGCAGGGCCTGATTTTGACTTTCCTTGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCTTGTTTCCTCCCCAGTGCCCCGCGACACGT Paraphaeosphaeria_michotii_AF250817 AAACGTCTCGGTCCACTGGGTCTGCCTTTGACTTTCCTCGGCAACTCTGACCCTACTGTTCAATCGTCGTACGCCCTGCTTCCTCCCCAGGGCTCCACGACACGT Paraphaeosphaeria_pilleata_AF250821 ATACGTCTCGGTCCGCCGGGTCTGCCTTAGACTTTCCTCGGCAACTCTAACCCTACTGTTCAACCGTCGTATACCCTGCTTCCTCCCCAGGGCTCCACGACACGT Paraphaeosphaeria_sp._AB096264 ACACGTTTCGGTCCGCCGGGCCTGATTTTGACTTTCCTTGGCAATTCTATCCCTACTGTACAACCGTCGTATACCCTGTTTCCTCCCAAGGGTTGCGCGACATGT ; END; [ The following blocks are output data for analysis step 4140 ] BEGIN TREES; TITLE Tb8912; LINK TAXA = TaxaForAnalysisStep4140; TREE Fig._2 = [&R] ((Helminthosporium_velutinum_AF145704,Helminthosporium_solani_AF163089),(Paraphaeosphaeria_michotii_AF250817,(Paraphaeosphaeria_pilleata_AF250821,(((Paraconiothyrium_estuarinum_AY642530,(Paraconiothyrium_cyclothyrioides_AY929375,Paraphaeosphaeria_sp._AB096264)),(Paraconiothyrium_africanum_EU295650,Paraconiothyrium_fungicola_AY642532,(Paraconiothyrium_hawaiiense_DQ885896,Paraconiothyrium_hawaiiense_DQ885897)Paraconiothyrium_hawaiiense,(Paraconiothyrium_variabile_EU295640,Paraconiothyrium_variabile_EU295641,Paraconiothyrium_variabile_EU295642,Paraconiothyrium_variabile_EU295643,Paraconiothyrium_variabile_EU295644,Paraconiothyrium_variabile_EU295639,Paraconiothyrium_variabile_EU295645,Paraconiothyrium_variabile_EU295646,Paraconiothyrium_variabile_EU295647,Paraconiothyrium_variabile_EU295648,Paraconiothyrium_variabile_EF055359,Paraconiothyrium_variabile_EF055360,Paraconiothyrium_variabile_EU295649)Paraconiothyrium_variabile,(Paraconiothyrium_brasiliense_EU295636,Paraconiothyrium_brasiliense_EU295632,Paraconiothyrium_brasiliense_EU295633,Paraconiothyrium_brasiliense_EU295634,(Paraconiothyrium_brasiliense_AY642531,Paraconiothyrium_brasiliense_EU295637),(Paraconiothyrium_brasiliense_EU295635,Paraconiothyrium_brasiliense_EU295638))Paraconiothyrium_brasiliense,(Coniothyrium_wernsdorffiae_AY904058,Coniothyrium_fuckelii_AY904055))),(Paraconiothyrium_sporulosum_AJ293815,Paraconiothyrium_sporulosum_AJ293814),(Paraconiothyrium_minitans_AJ293809,Paraconiothyrium_minitans_AJ293810))))'Paraphaeosphaeria-Paraconiothyrium'); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5097] END;