#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 15:01 GMT TreeBASE (cc) 1994-2008 Study reference: Rossman A., Farr D., Platas G., & Newcombe G. 2008. Hydropisphaera fungicola Rossman, Farr & Newcombe, sp. nov. Fungal Planet, 24. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2019] [ The following blocks are input data for analysis step 4189 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4189; DIMENSIONS NTAX=15; TAXLABELS Bionectria_ochroleuca_AY283558 Bionectria_ochroleuca_DQ862027 Hydropisphaera_erubescens_AF193228 Hydropisphaera_erubescens_AF193229 Hydropisphaera_fungicola_EU344902 Hydropisphaera_multiloculata_EU289204 Hydropisphaera_multiseptata_EU289205 Hydropisphaera_peziza_AY489730 Lasionectria_mantuana_EU289207 Lasionectria_sylvana_EU289206 Nalanthamala_squamicola_EU289208 Nectria_cinnabarina_AF193237 Nectriopsis_violacea_AY489719 Ochronectria_calami_AF193243 Ochronectria_calami_AF193244 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3121] TITLE 28S_rDNA; LINK TAXA = TaxaForAnalysisStep4189; DIMENSIONS NCHAR=567; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Bionectria_ochroleuca_AY283558 GGGATTGCCCTAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCGCA---AGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGGCGACGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGATGCCTAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTG-TTGAAAGGGAAGCGTTCATGACCAGACTTGGGCA-GGTTGATCATCCGTGGTTCTCCGCGGTGCACTCTGCCTGCCCAGGCCAGCATCAGTTCGCCCCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTC--GGGAGTGTTATAGCCCACTGTGTAATACCCTGGGGTGGACTGAGGTTCGCGC-TCTGCAAGGATGCTGGCGTAATGGTCATCAACGACCCGTCTT Bionectria_ochroleuca_DQ862027 GGGATTGCCCTAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCGCA---AGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGGCGACGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGATGCCTAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTG-TTGAAAGGGAAGCGTTCATGACCAGACTTGGGCA-GGTTGATCATCCGCGGTTCTCCGCGGTGCACTCTGCCTGCCCAGGCCAGCATCAGTTCGCCCCGGGGGATAAAGGTTTCGGGAATGTGGCTCCTCC--GGGAGTGTTATAGCCCGTTGCGTAATACCCTGGGACGGACTGAGGTTCGCGC-TCTGCAAGGATGCTGGCGTAATGGTCATCAACGACCCGTCTT Hydropisphaera_erubescens_AF193228 GGGATTGCCTTAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCCTTCT-GGCCCGAGTTGTAATTTGCAGAGGATGTTTCTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGTCGCTAAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGCTCATGACCAGACTTGGACC-GGTTGATCATCCATCGTTCTCGGTGGTGCACTCTGCCGGTTCAGGCCAGCATCAGTTTGGCCCGGGGGATAAAGGTTTCGGGAATGTGGCTCCCCACGGGGAGTGTTATAGCCCGTTGCGTAATACCCTGGGCTGGACTGAGGTTCGCGC-TCCGCAAGGATGCTGGCGTAATGGTCATCAGTGACCCGTCTT Hydropisphaera_erubescens_AF193229 GGGATTGCCTCAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCCTTCT-GGCCCGAGTTGTAATTTGCAGAGGATGTTTCTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGTCGCTAAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGCTTATGACCAGACTTGGACC-GGTTGATCATCCATCGTTCTCGGTGGTGCACTCTGCCGGTTCAGGCCAGCATCAGTTTGGCCCGGGGGATAAAGGCTTCGGGAATGTGGCTCCCCACGGGGAGTGTTATAGCCCGTTGCGTAATACCCTGGGCTGGACTGAGGTTCGCGC-TCCGCAAGGATGCTGGCGTAATGGTCATCAGTGACCCGTCTT Hydropisphaera_fungicola_EU344902 GGGATTGCCTCAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCCCTA--GGCCCGAGTTGTAATTTGCAGAGGATGTTTCTGGCGAGGTGCCTTCCGAGTGCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGTCGCTAAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGCTCATGACCAGACTTGGGCC-GGTTGATCATCCGCCGTTCTCGGCGGTGCACTCTGCCGGCTCAGGCCAGCATCAGTTTGGTCCGGGGGATAAAGGTGTAGGGAATGTGGCTCCCCCCGGGGAGTGTTATAGCCCTGCGCGTAATACCCTGGACTGGACTGAGGTTCGCGCATCTGCAAGGATGCTGGCGTAATGGTTATCAGTGACCCGTCTT Hydropisphaera_multiloculata_EU289204 GGGATTGCCTCAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCCTTCT-GGCCCGAGTTGTAATTTGCAGAGGATGTTTCTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGTCGCTAAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGCTCATGACCAGACTTGGGCC-GGTTGATCATCCACCGTTCTCGGTGGTGCACTCTGCCGGTTCAGGCCAGCATCAGTTTGGTCCGGGGGATAAAGGTTTCGGGAATGTGGCTCCCCACGGGGAGTGTTATAGCCCGTTGCGTAATACCCTGGGCTGGACTGAGGTTCGCGC-TCCGCAAGGATGCTGGCGTAATGGTCATCAGTGACCCGTCTT Hydropisphaera_multiseptata_EU289205 GGGATTGCCTCAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCCTTCT-GGCCCGAGTTGTAATTTGCAGAGGATGTTTCTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGTCGCTAAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGCTCATGACCAGACTTGGGCC-GGTTGATCATCCACCGTTCTCGGTGGTGCACTCTGCCGGTTCAGGCCAGCATCAGTTTGGTCCGGGGGATAAAGGTTTCGGGAATGTGGCTCCCCACGGGGAGTGTTATAGCCCGTTGCGTAATACCCTGGGCTGGACTGAGGTTCGCGC-TCCGCAAGGATGCTGGCGTAATGGTCATCAGTGACCCGTCTT Hydropisphaera_peziza_AY489730 GGGATTGCCTCAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCCCTA--GGCCCGAGTTGTAATTTGCAGAGGATGTTTCTGGCGAGGTGCCTTCCGAGTGCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGTCGCTAAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGCTCATGACCAGACTTGGGCC-GGTTGATCATCCGCCGTTCTCGGCGGTGCACTCTGCCGGCTCAGGCCAGCATCAGTTTGGTCCGGGGGATAAAGGTGTAGGGAATGTGGCTCCCCCCGGGGAGTGTTATAGCCCTGCGCGTAATACCCTGGACTGGACTGAGGTTCGCGCATCTGCAAGGATGCTGGCGTAATGGTTATCAGTGACCCGTCTT Lasionectria_mantuana_EU289207 GGGATTGCCTCAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCTCTCG-GGCCCGAGTTGTAATTTGCAGAGGATGTTTCTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCCGGTTGGTCGCTAAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGTTTATGACCAGACTTGGGCC-GGTTGATCATCCATCGTTCTCGGTGGTGCACTCTGCCGGCTCAGGCCAGCATCAGTTTGGCTTGGGGGATAAAGGTTTCGGGAATGTGGCTCCCTC--GGGAGTGTTATAGCCCGTTGCGCAATACCCTGGGCTAGACTGAGGTTCGCGC-TCCGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTT Lasionectria_sylvana_EU289206 GGGATTGCCTCAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCTCTCG-GGCCCGAGTTGTAATTTGCAGAGGATGTTTCTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCCGGTTGGTCGCTAAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGTTTATGACCAGACTTGGGCC-GGTTGATCATCCATCGTTCTCGGTGGTGCACTCTGCCGGCTCAGGCCAGCATCAGTTTGGCTTGGGGGATAAAGGTTTCGGGAATGTGGCTCCCTC--GGGAGTGTTATAGCCCGTTGCGTAATACCCTGGGCTAGACTGAGGTTCGCGC-TCCGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTT Nalanthamala_squamicola_EU289208 GGGATTGCCTCAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCCCTA--GGCCCGAGTTGTAATTTGCAGAGGATGTTTCTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGTCGCTAAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGCTTATGACCAGACTTGGGCC-GGTTGATCATCCATCGTTCTCGGTGGTGCACTCTGCCGGCTCAGGCCAGCATCAGTTTGGCCCGGGGGATAAAGGTTTCGGGAATGTGGCTTCCTTCGGGGAGTGTTATAGCCCGTTGCGTAATACCCTGGGCTGGACTGAGGTACGCGT-TCTGCAAGGATGCTGGCGTAATGGTCATCAGTGACCCGTCTT Nectria_cinnabarina_AF193237 GGGATTGCCCAAGTAACGGCGATGTGAATCGGCAACAGCTCAAATTTGAAATCTAGGCCCTTGTGGTCCGAGTTGTAATTTGTA{AG}AGGATGCTTTTGGTGAGGTAC-TTCCGA-TTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGATACCGATCCTCTGTAAAGCTCCTTCGACGAGTCGAGTA-TTTGGG-AATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGT-AAATAGTACGTGAAATTGGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCTTGGTTAATCATCCAGGGTTCTCCCTGGTGCACTTGGCCAGCCCAGGCCAGCATCAGTTTGTCGCGGGGGATAAAGGCGTTGGGAATGTGGCTCCCCC--GGGAGTGTTATAGCCCTTCGTGTAATACCCTGCTTTAGACTGAGGTTCGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTT Nectriopsis_violacea_AY489719 GGCATTGCCCCAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCCC-CA-GGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGACGAGGTACCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGTCGCCAAGTCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCAAAATGGGAGGTATACGTCTTCTAAAGCTAAATATAGGCCAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGCACATGACCAGACTTGGCCA-GGTTGATCATCCATCGTTCTCGGTGGTGCACTCTGCCTGGCCAGGCCAGCATCAGTTCGCCTTGGGGGATAAAGGTTTCGGGAATGTGGCTCCTCC--GGGAGTGTTATAGCCCGTTGCGCAATACCCTGGGGTGGACTGAGGTTCGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCTGCGACCCGTCTT Ochronectria_calami_AF193243 GGGATTGCCCCAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCTCTCG-GGCCCGAGTTGTAATTTGAAGAGGATGTTTCTGGCAAGGTACCTTCTGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTAGTTGGTCGCCGCGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCAAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGCTCATGACCAGACTTGGGCC-GGTTGATCATCCATCGTTCTCGGTGGTGCACTCTGCCGGTCCAGGCCAGCATCAGTTTGCCCCGGGGGATAAAGGCTTCGGGAATGTGGCTCCCTA--GGGAGTGTTATAGCCCGTTGCGTAATACCCTGTGGCAGACTGAGGTCCGCGC-TCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTT Ochronectria_calami_AF193244 GGGATTGCCCCAGTAACGGCGA-GTGAAGCGGCAACAGCTCAAATTTGAAATCT-GGCTCTCG-GGCCCGAGTTGTAATTTGAAGAGGATGTTTCTGGCAAGGTACCTTCTGAGTTCTCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTAGTTGGTCGCCGCGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGG-AATGCTGCTCAAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT-GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTG-TTGAAAGGGAAGCGCTCATGACCAGACTTGGGCC-GGTTGATCATCCATCGTTCTCGGTGGTGCACTCTGCCGGTCCAGGCCAGCATCAGTTTGCCCTGGGGGATAAAGGCTTCGGGAATGTGGCTCCCTA--GGGAGTGTTATAGCCCGTTGCGTAATACCCTGTGGCAGACTGAGGTCCGCGC-TCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 28S_rDNA) = N: 1-567; CODONPOSSET CodonPositions (CHARACTERS = 28S_rDNA) = N: 1-567; END; [ The following blocks are output data for analysis step 4189 ] BEGIN TREES; TITLE Tb8961; LINK TAXA = TaxaForAnalysisStep4189; TREE MB_tree = [&R] (Nectria_cinnabarina_AF193237,((((Bionectria_ochroleuca_AY283558,Bionectria_ochroleuca_DQ862027),Nectriopsis_violacea_AY489719),((((Hydropisphaera_erubescens_AF193228,Hydropisphaera_erubescens_AF193229),(Hydropisphaera_multiloculata_EU289204,Hydropisphaera_multiseptata_EU289205)),((Hydropisphaera_fungicola_EU344902,Hydropisphaera_peziza_AY489730),Nalanthamala_squamicola_EU289208)),(Lasionectria_mantuana_EU289207,Lasionectria_sylvana_EU289206))),(Ochronectria_calami_AF193243,Ochronectria_calami_AF193244))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5126] END;