#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 22:36 GMT TreeBASE (cc) 1994-2008 Study reference: Watanabe K., Ohi-toma T., & Murata J. 2008. Multiple hybridization in the Aristolochia kaempferi group (Aristolochiaceae): evidence from reproductive isolation and molecular phylogeny. American Journal of Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2058] [ The following blocks are input data for analysis step 4277 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4277; DIMENSIONS NTAX=26; TAXLABELS Aristolochia_AS2allele2_AM2allele2 Aristolochia_K555allele2_K437allele1_AS2allele1 Aristolochia_K580homo_Setu2homo Aristolochia_cucurbitifolia_AC2_allele1 Aristolochia_cucurbitifolia_AC2_allele2 Aristolochia_kaempferi_K158_allele1 Aristolochia_kaempferi_K158allele2_K325homo Aristolochia_kaempferi_K160_allele2 Aristolochia_kaempferi_K160allele1_K642allele1 Aristolochia_kaempferi_K61_homo Aristolochia_kaempferi_K642_allele2 Aristolochia_liukiuensis_K32_homo Aristolochia_manshuriensis_SEST21_homo Aristolochia_mollissima_AM2_allele1 Aristolochia_moupinensis_Mou2_allele1 Aristolochia_moupinensis_Mou2_allele2 Aristolochia_saccata_Asa_allele1 Aristolochia_saccata_Asa_allele2 Aristolochia_shimadai_K282_homo Aristolochia_shimadai_K437_allele2 Aristolochia_tanzawana_K555_allele1 Aristolochia_tanzawana_K653_allele2 Aristolochia_tanzawana_K95_allele1 Aristolochia_tanzawana_K95allele2_K653allele1 Aristolochia_westlandii_SETS36_allele1 Aristolochia_westlandii_SETS36_allele2 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3193] TITLE 'AP3 exon (MP & ML)'; LINK TAXA = TaxaForAnalysisStep4277; DIMENSIONS NCHAR=680; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Aristolochia_AS2allele2_AM2allele2 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGTGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_K555allele2_K437allele1_AS2allele1 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_K580homo_Setu2homo AAACTTTCCGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGACCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTACATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_cucurbitifolia_AC2_allele1 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGTCTTGCTTAG---TAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_cucurbitifolia_AC2_allele2 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGAATCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGTCTTGCTTAG---TAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_kaempferi_K158_allele1 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAGCTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTTCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_kaempferi_K158allele2_K325homo AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATATCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_kaempferi_K160_allele2 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTAGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGAAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTTTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_kaempferi_K160allele1_K642allele1 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTAGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATATCGTAAAAAG---ATAAGAAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_kaempferi_K61_homo AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGACCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGCAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAGTACTTGCCTTT Aristolochia_kaempferi_K642_allele2 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTAGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGAAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_liukiuensis_K32_homo AAACTTTCTGAGTATTGCAGCCCTTCCACCACGACAAAGAAAGTATACGATCGATTACAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGACCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGTTATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGTGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_manshuriensis_SEST21_homo AAACTTTCCGAGTATTGCAGCCCTTCTACTACGACAAAGAAAGTATACGATCGATTACAGGAGGTTTCTGGGATTAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGATCTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCTTAAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGTTGATTCAGGTAGGCCCGTCTTTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATTTTTCATCAAGAAGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTTTTTTCTAGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_mollissima_AM2_allele1 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGTTATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_moupinensis_Mou2_allele1 AAACTTTCCGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGGTTTCTGGGATTAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAACAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGATCTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACTTACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTAAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGACCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTACGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAGTTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_moupinensis_Mou2_allele2 AAACTTTCCGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAACAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTAAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGACCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAGTTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_saccata_Asa_allele1 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTGCAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAAGACACAAACAAAAGATTCCTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGATTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATCAGTTTGATGAGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_saccata_Asa_allele2 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTGCAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCCTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGATTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATCAGTTTGATGAGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_shimadai_K282_homo AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAACCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGTGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_shimadai_K437_allele2 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTCAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTGTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_tanzawana_K555_allele1 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTCAACAAGTTGAAAGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAGCTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGAC---------------- Aristolochia_tanzawana_K653_allele2 AAACTTTCCGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAGCTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCAGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCTTGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATT-GTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAGTACTTGCCTTT Aristolochia_tanzawana_K95_allele1 AAACTTTCCGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGATTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAGCTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAGTACTTGCCTTT Aristolochia_tanzawana_K95allele2_K653allele1 AAACTTTCCGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTACAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAGCTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCTTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGCTTTCGGATTGGCCAGCGGAGGGCCTCACATGTTCGGATTCCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATTAGTTTGATGCGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAGTACTTGCCTTT Aristolochia_westlandii_SETS36_allele1 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTGCAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTTGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCCTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGATTTCGGTTTGGCCAGCGGAGGGCCTCACATGTTCGGATTTCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATCAGTTTGATGAGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT Aristolochia_westlandii_SETS36_allele2 AAACTTTCTGAGTATTGCAGCCCTTCCACTACGACAAAGAAAGTATACGATCGATTGCAGGAGGTTTCTGGGATCAACTTGTGGAGCTCTCACTATGAGAAAATGCAAAATCATTTGAACAAGTTGAAGGAGGAGAATAGCAATCTGAGGAGGGAAATTAGCCAGAGAATGGGAGAAGAACTGGATGGTCTGGAAATGGAGGAACTGCGCGGTCTTGAGCAAAATATGGATAGTGCCCTGAAGGTCGTTCGTGAACGGAAG---TATCATGTGATCCACACACAGTGCGATACATACCGTAAAAAG---ATAAGGAACTTAGAGGACACAAACAAAAGATTCCTGAGAGCTCTGGAAGGAAGAGATGAGACTGCGGGTTTGCTGTATGCTGATTCAGGTAGGCCCGTCTGTGAATCAGATTTCGGTTTGGCCAGCGGAGGGCCTCACATGTTCGGATTTCGGGTGCAACCATGCCAACCTAATCTCCATGATTCTGGATATGGGAACGATGATCTGCGCCTTGCTTAG---CAGATTTCCAGGTGAAGAACCAGGAAGATATCTTTCATCAAGATGAATCAGTTTGATGAGGAGAATCATAAAATACCAAACTCTTTTCTGGTATTTGTTGGGAAAGTAGACCTTTAATCTACTTGTTTCAGACTCTAATACTTGCCTTT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'AP3 exon (MP & ML)') = N: 1-680; CODONPOSSET CodonPositions (CHARACTERS = 'AP3 exon (MP & ML)') = N: 1-680; END; [ The following blocks are output data for analysis step 4277 ] BEGIN TREES; TITLE Tb9049; LINK TAXA = TaxaForAnalysisStep4277; TREE Fig._3_AP3_exon = [&R] (Aristolochia_saccata_Asa_allele1,(Aristolochia_saccata_Asa_allele2,(Aristolochia_westlandii_SETS36_allele1,Aristolochia_westlandii_SETS36_allele2),(((Aristolochia_moupinensis_Mou2_allele1,Aristolochia_moupinensis_Mou2_allele2),Aristolochia_manshuriensis_SEST21_homo,((Aristolochia_tanzawana_K95_allele1,Aristolochia_tanzawana_K555_allele1),Aristolochia_tanzawana_K95allele2_K653allele1,Aristolochia_tanzawana_K653_allele2,Aristolochia_kaempferi_K158_allele1),Aristolochia_K580homo_Setu2homo),((Aristolochia_kaempferi_K160allele1_K642allele1,Aristolochia_kaempferi_K642_allele2,Aristolochia_kaempferi_K160_allele2),Aristolochia_K555allele2_K437allele1_AS2allele1,Aristolochia_kaempferi_K61_homo,Aristolochia_shimadai_K437_allele2,Aristolochia_kaempferi_K158allele2_K325homo,(Aristolochia_shimadai_K282_homo,Aristolochia_AS2allele2_AM2allele2),(Aristolochia_cucurbitifolia_AC2_allele1,Aristolochia_cucurbitifolia_AC2_allele2)),(Aristolochia_liukiuensis_K32_homo,Aristolochia_mollissima_AM2_allele1)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1044] END;