#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 22:39 GMT TreeBASE (cc) 1994-2008 Study reference: Watanabe K., Ohi-toma T., & Murata J. 2008. Multiple hybridization in the Aristolochia kaempferi group (Aristolochiaceae): evidence from reproductive isolation and molecular phylogeny. American Journal of Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2058] [ The following blocks are input data for analysis step 4279 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4279; DIMENSIONS NTAX=29; TAXLABELS Aristolochia_K642_1_K160_1_K95_1_K555_1_AC2_2_K653_2 Aristolochia_Setu2allele1_K580homo Aristolochia_cucurbitifolia_AC2_allele1 Aristolochia_kaempferi_K158_allele1 Aristolochia_kaempferi_K158_allele2 Aristolochia_kaempferi_K160_allele2 Aristolochia_kaempferi_K325_allele1 Aristolochia_kaempferi_K325_allele2 Aristolochia_kaempferi_K61_allele1 Aristolochia_kaempferi_K61_allele2 Aristolochia_kaempferi_K642_allele2 Aristolochia_liukiuensis_K32_homo Aristolochia_manshuriensis_SEST21_allele1 Aristolochia_manshuriensis_SEST21_allele2 Aristolochia_mollissima_AM2_allele1 Aristolochia_mollissima_AM2_allele2 Aristolochia_moupinensis_allele1 Aristolochia_moupinensis_allele2 Aristolochia_saccata_Asa_allele1 Aristolochia_saccata_Asa_allele2 Aristolochia_shimadai_AS2_homo Aristolochia_shimadai_K282_homo Aristolochia_shimadai_K437_allele1 Aristolochia_shimadai_K437_allele2 Aristolochia_shimadai_Setu2_allele2 Aristolochia_tanzawana_K555_allele2 Aristolochia_tanzawana_K653_allele1 Aristolochia_tanzawana_K95_allele2 Aristolochia_westlandii_SETS36 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3194] TITLE 'AP3 intron (ML)'; LINK TAXA = TaxaForAnalysisStep4279; DIMENSIONS NCHAR=373; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aristolochia_K642_1_K160_1_K95_1_K555_1_AC2_2_K653_2 GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_Setu2allele1_K580homo GTCAGCTCTGTATATCACTCTTACCCTAAGGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCGTTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CTTTCTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_cucurbitifolia_AC2_allele1 GTCAGCTCTGTATATAACTTTTACCCTAATGAAATATTAGCTTATACAATTGCCACTTGAACTTCAGAAGAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTTT-CT--CATTTGGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_kaempferi_K158_allele1 GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCCGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTCGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_kaempferi_K158_allele2 GTCAGCTCTGTATATAACTTTTACCCTAATGAAATATTAGCTTATACAATTGCCACTTGAACTTCAGAAGAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTTCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_kaempferi_K160_allele2 GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTCCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGACCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_kaempferi_K325_allele1 GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAGGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGGCAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCTATACTATTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTTT-CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_kaempferi_K325_allele2 GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCTATACAATTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTTT-CT--CATTTTGGTCAACTTCACCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_kaempferi_K61_allele1 GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAGGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGGCAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCTATACAATTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CATTCTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_kaempferi_K61_allele2 GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCGTTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CTTTCTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_kaempferi_K642_allele2 GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGACCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_liukiuensis_K32_homo GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACAGAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGATGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_manshuriensis_SEST21_allele1 GTCAGCTCTGTATATAACTCT-ACCCTAATGAAATATTAGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCGAAGAAGTCAAGAAGACAGC--TTTTTCTTGAACGTATTTTGAGTGTAGATTAAACAGGTTTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATTCATTTTCCTGTCCACCATTGCAGTTGCTACTATTCCTTTCTTTGTTTTTTTT--CTTTCATTTTGGTCAACTTCTCCTACGCTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_manshuriensis_SEST21_allele2 GTCAGCTCTGTATATAACTCT-ACCCTAATGAAATATTAGCCTATAGAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGGAAGAAAACTTTCAGAAAAATTCTGCGAAGAAGTCAAGAAGACAGC--TTTTTCTTGAACGTATTTTGAGTGTAGATTAAACAGGTTTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATTCATTTTCCTGTCCACCATTGCAGTTGCTACTATTCCTTTCTTTGTTTTTTTT--CTTTCATTTTGGTCAACTTCTCCTACGCTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_mollissima_AM2_allele1 GTCAGCTCTGTATATAACTTTTACCCTAATGAAATATTAGCTTATACAATTGCCACTTGAACTTCAGAAGAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACTTTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTTTTCT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_mollissima_AM2_allele2 GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACAGAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACTTTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTTTTCT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_moupinensis_allele1 GTCAGCTCTGTATATAACTCTTACCCTAATATAATATTAGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTATGCGAAGAAGTCAAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTTTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTATTTGTTTTTTTTTTCTTTCTTTTTTGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_moupinensis_allele2 GTCAGCTCTGTATATAACTCTTACCCTAATGAAATATTAGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTTTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTATTTGTTTTTTTTT-CTTTCTTTTTTGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_saccata_Asa_allele1 GTCAGCTCTGTATATAACTCTTACCCTAATGAAATATTAGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAATTTCTGCGAAGAAGTCTAGAAGACGGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATGCATTTTCCTGTCCTCCATTGCAGTTGCTTCTATTCCTTGCTTTGCTTTTTTT--CTTTCTTTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_saccata_Asa_allele2 GTCAGCTCTGTATATAACTCTTACCCTAATGAAATATTAGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAATTTCTGCGAAGAAGTCTAGAAGACGGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCTCCATTGCAGTTGCTTCTATTCCTTGCTTTGCTTTTTTT--CTTTCTTTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_shimadai_AS2_homo GTCAGCTCTGTATATAACTTTTACCCTAATGAAATATTAGCTTATACAATTGCCACTTGAACTTCAGAAGAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_shimadai_K282_homo GTCAGCTCTGTATATAACTTTTACCCTAATGAAATATTAGCTTATACAATTGCCACTTGAACTTCAGAAGAGGAACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_shimadai_K437_allele1 GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAGGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGGCAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCTATACAATTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTTT-CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_shimadai_K437_allele2 GTCAGCTCTGTATATAACTTTTACCCTAATGAAATATTAGCTTATACAATTGCCACTTGAACTTCAGAAGAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGCGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_shimadai_Setu2_allele2 GTCAGCTCTGTATATCACTCTTACCCTAAAGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCGTTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CTTTCTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_tanzawana_K555_allele2 GTCAGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACAATTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTTT-CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_tanzawana_K653_allele1 GTCAGCTCTGTATATCACTCTTACCCTAAGGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTT--CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_tanzawana_K95_allele2 GTCTGCTCTGTATATCACTCTTACCCTAATGAAATATTTGCTTATACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCAGAAAAATTCTGCG--------AAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACAATTTCCTGTCCACCATTGCAGTTGCTTCTATTCCTTTCTTTGTTTTTTTTT-CT--CATTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGGCGCAG Aristolochia_westlandii_SETS36 GTCAGCTCTGTATATAACTCTTACCCTAATGAAATATTAGCTTAGACAATTGCTACTTGAACTTCAGAAAAGGGACACAGAAGCATGAAAGAAAACTTTCTGAAAAATTCTGCGAAGAAGTCAAGAAGACAGCACTTTTTCTTGAACGTATTT-GAGTGTAGATTAAACAGGTGTTTAGAACTTAGCCACTGATTCTGCTCTCTATTGTTCTACTGTAACAG---GTGAGTAAAGTTCATTCTGATCACCTGTTCCATACATTTTCCTGTCCTCCATTGCAGTTGCTTCTATTCCTTGCTTTGCTTTTTTT--CTTTCTTTTTGGTCAACTTCTCCTACACTTCTGTACCTCATCCTGAATTCCTGGATGCAG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'AP3 intron (ML)') = N: 1-373; CODONPOSSET CodonPositions (CHARACTERS = 'AP3 intron (ML)') = N: 1-373; END; [ The following blocks are output data for analysis step 4279 ] BEGIN TREES; TITLE Tb9051; LINK TAXA = TaxaForAnalysisStep4279; TREE Fig._3_AP3_intron = [&R] (((Aristolochia_saccata_Asa_allele1,Aristolochia_saccata_Asa_allele2),Aristolochia_westlandii_SETS36),(((Aristolochia_moupinensis_allele1,Aristolochia_moupinensis_allele2),(Aristolochia_manshuriensis_SEST21_allele1,Aristolochia_manshuriensis_SEST21_allele2)),((Aristolochia_kaempferi_K642_allele2,Aristolochia_kaempferi_K160_allele2),Aristolochia_K642_1_K160_1_K95_1_K555_1_AC2_2_K653_2,Aristolochia_tanzawana_K653_allele1,(Aristolochia_tanzawana_K95_allele2,Aristolochia_tanzawana_K555_allele2,((Aristolochia_kaempferi_K325_allele1,Aristolochia_kaempferi_K61_allele1,Aristolochia_shimadai_K437_allele1),Aristolochia_kaempferi_K325_allele2)),(Aristolochia_kaempferi_K61_allele2,Aristolochia_Setu2allele1_K580homo,Aristolochia_shimadai_Setu2_allele2),Aristolochia_kaempferi_K158_allele1,(Aristolochia_liukiuensis_K32_homo,Aristolochia_mollissima_AM2_allele2)),(Aristolochia_kaempferi_K158_allele2,Aristolochia_shimadai_K282_homo,Aristolochia_shimadai_K437_allele2,Aristolochia_shimadai_AS2_homo,Aristolochia_cucurbitifolia_AC2_allele1,Aristolochia_mollissima_AM2_allele1))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1046] END;