#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 22:33 GMT TreeBASE (cc) 1994-2008 Study reference: Watanabe K., Ohi-toma T., & Murata J. 2008. Multiple hybridization in the Aristolochia kaempferi group (Aristolochiaceae): evidence from reproductive isolation and molecular phylogeny. American Journal of Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2058] [ The following blocks are input data for analysis step 4282 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4282; DIMENSIONS NTAX=18; TAXLABELS Aristolochia_K282allele1_AS2allele2_K32allele2_AM2allele2 Aristolochia_K61allele1_K325homo_K437homo_Setu2homo Aristolochia_K95homo_K555allele2_K580homo_K653homo Aristolochia_cucurbitifolia_AC2_homo Aristolochia_kaempferi_K158_allele1 Aristolochia_kaempferi_K158_allele2 Aristolochia_kaempferi_K160_allele1 Aristolochia_kaempferi_K160allele2_K642homo Aristolochia_kaempferi_K61_aellele2 Aristolochia_liukiuensis_K32_allele1 Aristolochia_manshuriensis_SEST21_homo Aristolochia_mollissima_AM2_allele1 Aristolochia_moupinensis_Mou2_homo Aristolochia_saccata_Asa_homo Aristolochia_shimadai_AS2_allele1 Aristolochia_shimadai_K282_allele2 Aristolochia_tanzawana_K555_allele1 Aristolochia_westlandii_SETS36_homo ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3192] TITLE 'PhyA (MP & ML)'; LINK TAXA = TaxaForAnalysisStep4282; DIMENSIONS NCHAR=697; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aristolochia_K282allele1_AS2allele2_K32allele2_AM2allele2 TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACGCTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_K61allele1_K325homo_K437homo_Setu2homo TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACACTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCTCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_K95homo_K555allele2_K580homo_K653homo TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACGCTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCTGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_cucurbitifolia_AC2_homo TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACACTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_kaempferi_K158_allele1 TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACACTGAGGGCCTCACATAGTTGTCACCAGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCTCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_kaempferi_K158_allele2 TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACACTGAGGGCCTCACATAGTTGTCACCAGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCTCAACCAAGAACCACAATCGAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_kaempferi_K160_allele1 TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACGCTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTTGTGGTTTGCCACAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_kaempferi_K160allele2_K642homo TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACGCTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTTGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_kaempferi_K61_aellele2 TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACACTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCTCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACAGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_liukiuensis_K32_allele1 TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACGCTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACTATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_manshuriensis_SEST21_homo TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACGCTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTTGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCCTCTTGTGCCAAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAAAGCTCTTTCTCTTGGTGACATAGTT Aristolochia_mollissima_AM2_allele1 TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCCAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACGCTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_moupinensis_Mou2_homo TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTAAAAGTTTGTCAGGATGAGAGGCTTTCATTTGATTTGACTTTGTGTGGTTCCACGCTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTTAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGACTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCAAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAAAGCTCTTTCTCTCGGTGACATAGTT Aristolochia_saccata_Asa_homo TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACGCTAAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATCACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAAGGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCAAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAAAGCTCATTCTCTCGGTGACATAGTT Aristolochia_shimadai_AS2_allele1 TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACGCTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTTTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_shimadai_K282_allele2 TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACACTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGAAGCCCAAACATTATGGACCTTGTCAAATGTGACGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_tanzawana_K555_allele1 TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGGATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACGCTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCTGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTCGTGGTTTGCCATAACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTACGGACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCAAAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCGAAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAAATACGTGAGATAAACCAATGGCTCTCTGAGTACCATATGGATTCCACGGGTCTTAGTACAGATAGCCTTCATGATGCTGGATATCCTAATGCTCTTTCTCTCGGTGACATAGTT Aristolochia_westlandii_SETS36_homo TATTCCTCAAGCTTCTAGGTTTCTGTTCATGAAGAACAAGGTTCGAATGATTTGTGATTGCTATGCTAAGCCTGTGAAAGTTTATCAGGATGAGAGGCTTTCATTTGATTTGACTTTATGTGGTTCCACGCTGAGGGCCTCACATAGTTGTCACCTGCAGTATATGAAGAATATGGGTTCCGTTGCTTCTCTTGTCTTGGCAGTGGTTGTGAAAGAAGGTGAAGAGGATGATAATCCAGACCCCAACCAAGAACCACAATCAAAGAGAAAGAGGCTTTGGGGCCTTGTGGTTTGCCATCACACAACTCCTAGATTTGTTCCCTTTCCTCTAAGATATGCATGTGAATTTCTCATGCAAGTTTTTGCCATCCATGTCAATAATGAGGTCGAACTAGAGAACCAAATACGAGAAAAAAACATTTTGCGTACGCAGACACTTCTCTGTGACATGCTCCTTCGAGATTCCTCCTTGAGTATTGTGACCCGTAGCCCAAACATTATGGACCTTGTCAAATGTGATGGAGCAGCCTTCTTGTGCCATAACAAAGTTTATACACTAGGCGTAACTCCAACCGAATCACAGATACGTGAGATAAACGAATGGCTCTCTGAGTACCATATGGATTCCACAGGTCTTAGTACAGATAGCCTTCAAGATGCTGGATATCCTAAAGCTCATTCTCTCGGTGACATAGTT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'PhyA (MP & ML)') = N: 1-697; CODONPOSSET CodonPositions (CHARACTERS = 'PhyA (MP & ML)') = N: 1-697; END; [ The following blocks are output data for analysis step 4282 ] BEGIN TREES; TITLE Tb9054; LINK TAXA = TaxaForAnalysisStep4282; TREE Fig._3_PhyA = [&R] (Aristolochia_saccata_Asa_homo,(Aristolochia_westlandii_SETS36_homo,(Aristolochia_moupinensis_Mou2_homo,Aristolochia_manshuriensis_SEST21_homo,((Aristolochia_kaempferi_K160_allele1,Aristolochia_kaempferi_K160allele2_K642homo),(Aristolochia_K95homo_K555allele2_K580homo_K653homo,Aristolochia_tanzawana_K555_allele1),((Aristolochia_kaempferi_K61_aellele2,Aristolochia_K61allele1_K325homo_K437homo_Setu2homo,(Aristolochia_kaempferi_K158_allele1,Aristolochia_kaempferi_K158_allele2)),Aristolochia_cucurbitifolia_AC2_homo,Aristolochia_shimadai_K282_allele2),Aristolochia_K282allele1_AS2allele2_K32allele2_AM2allele2,Aristolochia_shimadai_AS2_allele1,Aristolochia_liukiuensis_K32_allele1,Aristolochia_mollissima_AM2_allele1)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1049] END;