#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 22:34 GMT TreeBASE (cc) 1994-2008 Study reference: Watanabe K., Ohi-toma T., & Murata J. 2008. Multiple hybridization in the Aristolochia kaempferi group (Aristolochiaceae): evidence from reproductive isolation and molecular phylogeny. American Journal of Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2058] [ The following blocks are input data for analysis step 4284 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4284; DIMENSIONS NTAX=22; TAXLABELS Aristolochia_K325homo_AS2_allele1 Aristolochia_K555_2_K653homo_K61_2_K158_1_K437_1_AC2_2_AM2_2 Aristolochia_cucurbitifolia_AC2_allele1 Aristolochia_kaempferi_K158_allele2 Aristolochia_kaempferi_K160_allele1 Aristolochia_kaempferi_K580_homo Aristolochia_kaempferi_K61_allele1 Aristolochia_kaempferi_K642homo_K160allele2 Aristolochia_liukiuensis_K32_homo Aristolochia_manshuriensis_SEST21_allele1 Aristolochia_manshuriensis_SEST21_allele2 Aristolochia_mollissima_AM2_allele1 Aristolochia_moupinensis_Mou2_homo Aristolochia_saccata_Asa_homo Aristolochia_shimadai_AS2_allele2 Aristolochia_shimadai_K282_homo Aristolochia_shimadai_K437_allele2 Aristolochia_shimadai_Setu2_allele1 Aristolochia_shimadai_Setu2_allele2 Aristolochia_tanzawana_K555_allele1 Aristolochia_tanzawana_K95_homo Aristolochia_westlandii_SETS36_homo ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3187] TITLE 'PI exon (MP)'; LINK TAXA = TaxaForAnalysisStep4284; DIMENSIONS NCHAR=574; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aristolochia_K325homo_AS2_allele1 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGACATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_K555_2_K653homo_K61_2_K158_1_K437_1_AC2_2_AM2_2 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_cucurbitifolia_AC2_allele1 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CACCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_kaempferi_K158_allele2 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAAAAGGAATATCCATCTCACATCCCTTACACCTTCTGCGCTCAACCTAGCCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTC----GGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_kaempferi_K160_allele1 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATTTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAAAAGGAATATCCATCTCACATCCCTTACACCTTCTGCGCTCAACCTAGCCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTC----TGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_kaempferi_K580_homo TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGACATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTTCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_kaempferi_K61_allele1 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---AGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_kaempferi_K642homo_K160allele2 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGACATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATTTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAAAAGGAATATCCATCTCACATCCCTTACACCTTCTGCGCTCAACCTAGCCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTC----TGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_liukiuensis_K32_homo TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATCAACTCCCTCCCTCTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_manshuriensis_SEST21_allele1 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGCTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAAAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGCCAGCCCAATCTGCATCAGAAAAAGTGA---GGATTGTCTGGATGGTCATACTCCTTACCTTTGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_manshuriensis_SEST21_allele2 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAAAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGCCAGCCCAATCTGCATCAGAAAAAGTGA---GGATTGTCTGGATGGTCATACTCCTTACCTTTGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_mollissima_AM2_allele1 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGACATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTC----GGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_moupinensis_Mou2_homo TCTTCTCCAGCACGGGGAAGATGTCCGAGTTTTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGGTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAAAAGGATTATCCATCTCACATCCCTTACACCTTCTGCGCGCAACCTAGCCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGAAGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_saccata_Asa_homo TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAAAAGGATTATACATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGCCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGATGATAAAAGGACTTGTCTTGGTAGGT Aristolochia_shimadai_AS2_allele2 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGGGAAGATATAAACTCCCTCCCACCGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_shimadai_K282_homo TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGACATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTCAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_shimadai_K437_allele2 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGACATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---AGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCATGGTAGGT Aristolochia_shimadai_Setu2_allele1 TCTTCTCCAGCACGGGAAAGATGTCCGAGTTCAGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAAATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTTCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_shimadai_Setu2_allele2 TCTTCTCCAGCACGGGAAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTTCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_tanzawana_K555_allele1 TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGACATAAACTCCCTTCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_tanzawana_K95_homo TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGTAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGACATAAACTCCCTTCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCAAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAGAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGTCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTACCTTGGTCACCAAGATGATAAAAAGACTTGTCTTGGTAGGT Aristolochia_westlandii_SETS36_homo TCTTCTCCAGCACGGGGAAGATGTCCGAGTTCTGCAGTCCCTCCACCACACTGGTGAAGTTGCTGGATCGATATCACAAGCAAGCGGGAAAGAAGCTTTGGGATGCTAAGCATGAGTATCTGAGCAATGAAGTTGAAAGAACCAAGAAAGAGAATGACAACATGCAGATCAAGCTGAGGCACTTGAAAGGCGAAGATATAAACTCCCTCCCACTGAAAGAACTCATGGCAATAGAGGAAGCACTTGAGGAAGGAGTTGCTGGTGTTCGTGCCAGGCAG---ATGGAAGCTTTAAAGATACATAAGAAGAAT---GGTAGAAACTTGGAAGAGGAGCACAAGTGCCTTAGTTATATCTTG---CATCAACAAGAACTGGCAATGCATGGGAATCTGAGAGAATTGGCTAATGGGTATCCAGAAAGAGAAAAGGATTATCCATCTCAGATCCCTTACACCTTCTGCGCGCAACCTAGCCAGCCCAATCTGCATCAGAAAAAGTAA---GGATTGTCTGGATGGTCATACTCCTTACCTTG------------------------------------ ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'PI exon (MP)') = N: 1-574; CODONPOSSET CodonPositions (CHARACTERS = 'PI exon (MP)') = N: 1-574; END; [ The following blocks are output data for analysis step 4284 ] BEGIN TREES; TITLE Tb9056; LINK TAXA = TaxaForAnalysisStep4284; TREE Fig._3_PIexon = [&R] (Aristolochia_saccata_Asa_homo,(Aristolochia_westlandii_SETS36_homo,(Aristolochia_moupinensis_Mou2_homo,((Aristolochia_kaempferi_K642homo_K160allele2,Aristolochia_kaempferi_K160_allele1),Aristolochia_kaempferi_K158_allele2)),(Aristolochia_manshuriensis_SEST21_allele1,Aristolochia_manshuriensis_SEST21_allele2),((Aristolochia_tanzawana_K95_homo,Aristolochia_tanzawana_K555_allele1),Aristolochia_K555_2_K653homo_K61_2_K158_1_K437_1_AC2_2_AM2_2,(Aristolochia_shimadai_Setu2_allele1,Aristolochia_shimadai_Setu2_allele2),Aristolochia_kaempferi_K580_homo,Aristolochia_shimadai_K437_allele2,Aristolochia_kaempferi_K61_allele1,Aristolochia_K325homo_AS2_allele1,Aristolochia_shimadai_AS2_allele2,Aristolochia_liukiuensis_K32_homo,Aristolochia_shimadai_K282_homo,Aristolochia_cucurbitifolia_AC2_allele1,Aristolochia_mollissima_AM2_allele1))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1051] END;