#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2026; 13:36 GMT TreeBASE (cc) 1994-2008 Study reference: Nelsen M., Lumbsch H., Lücking R., & Elix J. 2008. Further evidence for the polyphyly of Lepraria (Lecanorales: Stereocaulaceae). Nova Hedwigia, 87(3-4): 361-371. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2059] [ The following blocks are input data for analysis step 4287 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4287; DIMENSIONS NTAX=78; TAXLABELS Adelolecia_pilati_AY300874_AY300826 Amandinea_punctata_AY143399_DQ986756 Bacidia_rosella_AY300877_AY300829 Bacidia_schweinitzii_DQ972998_DQ782911 Bacidia_trachona_AY567784 Bapalmuia_palmularis_AY567781 Byssolecania_variabilis_AY567780 Byssoloma_leucoblepharum_AY567778 Byssoloma_marginatum_AY567777 Byssoloma_meadii_AY567776 Byssoloma_sp_EU601737 Byssoloma_subdiscordans_AY567779 Calicium_viride_AY143402_AY340538 Calopadia_foliicola_AY567782 Calopadia_lecanorella_EU601738_EU601751 Calopadia_sp_EU601739_EU601752 Calopadia_subcoerulescens_EU601740 Candelaria_concolor_DQ986806_DQ986791 Canoparmelia_caroliniana_AY584613_AY584634 Catolechia_wahlenbergii_DQ986811_DQ986794 Cladonia_caroliniana_AY584614_AY584640 Crocynia_gossypina_AY567766 Crocynia_pyxinoides_AY584615_AY584653 Fellhanera_bouteillei_AY567787 Fellhanera_paradoxa_EU601742 Fellhanera_sp_EU601741 Fellhanera_subtilis_AY567786 Fellhanera_viridisorediata_AY567775 Gypsoplaca_macrophylla_DQ899299_DQ899298 Halecania_alpivaga_AY756368 Lasallia_papulosa_DQ986891_DQ883691 Lasioloma_arachnoideum_AY567783 Lecanora_achariana_DQ972976_DQ973027 Lecanora_contractula_DQ986898_DQ986746 Lecanora_hybocarpa_DQ912273_DQ782910 Lecanora_intumescens_AY567715_AY300841 Lecanora_paramerae_EF105418_EF105422 Lecanora_polytropa_DQ986807_DQ986792 Lecanora_sulphurea_EF105419_EF105423 Lecidea_silacea_DQ986878 Lepraria_coriensis_EU601743_EU601753 Lepraria_coriensis_EU601744 Lepraria_coriensis_EU601745_EU601754 Lepraria_coriensis_EU601746 Lepraria_incana_DQ986812_DQ986795 Lepraria_lobificans_DQ986887_DQ986768 Lepraria_usnica_AY300894_AY300843 Lepraria_usnica_EU601747 Letrouitia_domingensis_AY584619_AY584648 Lobaria_pulmonaria_AY340504_AF183934 Megalospora_tuberculosa_AY584623_AY584650 Mycoblastus_sanguinarius_DQ912276_DQ912333 Neophyllis_melacarpa_AY340511_AY340556 Niebla_cephalota_DQ986893_DQ986762 Parmelia_saxatilis_AY340514_AY300849 Peltigera_aphthosa_AY340515_AF286759 Pertusaria_amara_AY300900_AF274101 Physcia_aipolia_DQ912290_DQ782904 Pilocarpaceae_genus_et_sp_nov_EU601736_EU601749 Pleopsidium_gobiense_DQ991755_DQ883698 Polysporina_simplex_AY853337_AY640961 Porpidia_albocaerulescens_DQ986871_DQ986757 Porpidia_speirea_DQ986865_DQ986758 Protoparmelia_badia_EF105420_EF105425 Pyrrhospora_quernea_AY300908_AY300858 Ramalina_complanata_DQ972986_DQ973038 Rhizocarpon_geographicum_AF483187_AY853389 Rhizoplaca_melanophthalma_DQ787352_DQ787351 Rinodina_tephraspis_DQ912293_DQ912345 Speerschneidera_euploca_AY300912_AY300862 Sphaerophorus_globosus_DQ986866_DQ986767 Sporopodium_antoninianum_AY567785 Sporopodium_sp_nov_EU601748_EU601750 Trapelia_glebulosa_AF381568_AF274098 Umbilicaria_mammulata_DQ912305_DQ782912 Usnea_strigosa_DQ972981_DQ973033 Vulpicida_juniperina_AY340535_AY340577 Xanthoria_polycarpa_DQ912303_DQ912351 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3195] TITLE mtSSU_nrLSU; LINK TAXA = TaxaForAnalysisStep4287; DIMENSIONS NCHAR=1655; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Adelolecia_pilati_AY300874_AY300826 ??TAGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGGAATAG-TATTTGCA-CTAAC-AAATAGTTGA----------------------------------------------------------------------------------------------------------------------TGCAAACTCGACTCAGTCGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TTCAAGGGG-------------------------------------------ACTAATTT-ACTAGAGTTACTTGTGAGGGGGTATTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTTTTATACCT--CTTTCTGGAAGGAAAA-T-AACGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTAGCGAACAGGATTAGATACCCCAGTAG-TCAAA-GGAGAAAATGATGAATGTCATAGATTAG---ACATATAATG---------G-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCTCCTT----CGGGGTCCGAGTTGTAATTTGTAGAGGATGTTTCGGG-AGAGGCGCCGGTCTAAGTCCCTTAGAACAGGGTGTCGTAG-AGGGTGAGAATCCCGTATGTGACTGGCG-ACCAATCCCATATGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTGCGTAGGCGATCAACCTCT--G--------TTCTCAGTGGTGCACTCGTCT-TCGATCAGGCCAGCATCGGTTCGGGGGGCGGGATAAAGGCCTTGGGAATGTAGCTCCCCTC--GGGG--AGT-GTTAT-AGCCCTCGGTGCAATGCCGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTG Amandinea_punctata_AY143399_DQ986756 AATAGCCTAACGGCTGAA----------CCAGCAACTTGAATGAATGTATAGCGAAAGCTAGTTGTGCTTAATTTAGTGTAAACTAAATTGG--------------------------------------------------------------------------------------------------------------TACAATATTGACTATGTCAAATAAAGTTCTAGGTA-GAATTATGATGATGAC-ATTGTCT-ATCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAAAAGACTAGTGTTACTCATCTTGAATAGGTTTAAAGGGTACCTAGACGGCCAATCAAGCCCCAAAAGGGT-------------------------------------------ACTAATGG-GCTAGAGTTTAATATAAGTAGGCTTTAAAGTACT-GAGA-ATG--TTGAGAGATGAAATTCTGTGATACTATA-------------------TACGGCACTGGTAAAGGCGAAAGCATCTTATTATGTAA----------------------------------------------------------------------------------------------------------------------------------------AAA-CTGACGTTGAGGGACGAAGGCTGTGTGTAGCAAAAAGGATTAGATACCCAAGTAG-TCTCA-GCAGAAAATGATGAATGTCATAGTGTAGAGAAA-------------------T---------------------------------------------------------------------------------------------------------------------------TTTGTACTATAAATGAAAGTGTAAGCATTCCACCTTAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCTCCT-----CGGGGTCCGAGTTGTAATTTGTAGAGGGTGTTTCGGG-CGACGCGCCGGCCTAAGTTCCTTGGAACAGGACGTCATAG-AGGGTGAGAATCCCGTATGCGGCCGGCG-ACCGAGTTCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTGTTCGGGTGATCAACCGT---------CCTGTAAGGGCGGTGCACTCG-CC-CGCGACAGGCCAGCATCGGTTCGGGCGGCTGGATAAAGGCCTTGGGAACGTAGCTCCCCTC--GGGG--AGT-GTTAT-AGCCCAAGGTGCAATGCGGCCAGCCTGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTG Bacidia_rosella_AY300877_AY300829 ?????????????????A----------CCAGCAACTTGGAGGAATGTATAGTGAAAGCTAATTGCATTAAACATAA-----------------------------------------------------------------------------------------------------------------------------TGCAATATCAACAATGTTGAATAAAATTCTGGATA-AGATTTTGATAATGAC-AATTCTT-ATCTATATGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAACACGTTGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACTTAGACGGCAAATAAAGCC-TTAATTGGA-------------------------------------------ACTGGTTT-GCTAGAGTTACTTGCGAGGGGGCCTAAAAGTACT-ATT--GG---TTTAGAGATAAAATTCTTCGAGACCA--TTTATCAAAT-GATAAAA-AATGGCACAGGTAAAGGCGAAAGCGTCTCCCTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGAATAGCGAATAGGATTAGATACCCTAGTAG-TCGAA-GCAGAGAATGATGAGTGTCATAAACTAG---ATTAA--------------G-----------------------------------------------------------------------------------------------------------------------------TTTAGTTTATAAATGAAAGTGTAAGCACTCCACCTTATGAGTAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCTCC-----CGGGGTCCGAGTTGTAATTTGTAGAGGATGCTTCGGG-TGCGGCGCCAGCCGAAGTCCCTTGGAACAGGGCGTCACAG-AGGGTGAGAATCCCGTACGTGGCCGGCA-ACCAACCCCAGGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-TGCCCGTGGGTGCTCAGCGGG---------G-GTTCTCCCCCGTGCACTCGCCC-ACGATCAGGCCAGCATCGGTTCCGGCGACCGGATAAAGGCCCGGGAAATGTGGCTCCCCTC--GGGG--AGT-GTTAT-AGCCCCGGGTGTCATGCGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCAAGGATGCTGGCACAATGGTCGTAAGCGACCCGTCTTG Bacidia_schweinitzii_DQ972998_DQ782911 ????????????????????????????CCAGCAACTTGGATGAATGTATAGCGAAAGCTAGTTGTATGAAAATA-------------------------------------------------------------------------------------------------------------------------------TGCAATATCAAAT-AGTTGAATAAAATTCTGGATA-AAATT-TGATAATGAC-ATTTTTT-ATTCATATGTCTTGACCAAAAAACGTGCCAGCAGTCGCGGTAACACGTTTAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACTTAGACGGTAGATAAAGCC-TTTATGGA--------------------------------------------ACTAATCT-GCTAGAGTTACTTGTGAGGGGGCCTAAAAGTACT-ATT--GG---TTTAGAGATAAAATTCTACAAGACCA--CCTTTCAAAGGGATAGTA-AATGGCACAGGTAAAGGCGAAAGCGTCCTCCTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGAATAGCGAATAGGATTAGATACCCTAGTAG-TCGAA-GCAGAAAATGATGAGTGTCATAAGCTAG---ACATAT-------------G-----------------------------------------------------------------------------------------------------------------------------TTTAGTTTATAAATGAAAGTGTAAGCACTCCACCTTATGAGTAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCCTT-----CGGGGCCCGAGTTGTAATTTGTAGAGGATGTTTCGGG-TGCGGCGCCGGTCGAAGTCCCTTGGAACAGGGTGTCACAG-AGGGTGAGAATCCCGTACGTGGCCGGTG-ACCAAGCCCATGTGAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-TGCCCGTGGGTGCTCAGCGGGG----------GTTTGCCCCCGTGCACTCGCCC-ACGATCAGGCCAGCATCAGTTCCGGCGACCGGATAAAGGCCCGAGGAATGTAGCTCCCCTC--GGGG--AGT-GTTAT-AGCCTCGGGTGGCATACGGCCAGCTGGGACTGAGGACCGCGCTTC-GGCAAGGATGCTGGCGTAATGGTTGCAAGCGACCCGTCTTG Bacidia_trachona_AY567784 AATAGCCTGACGGCTGAA----------CCAGCAACTTGGAAGAATGTATAGCGAAAGCTAATTATTTCGGA----------------------------------------------------------------------------------------------------------------------------------AATAATATCGATTTACTCGAATAAAATTCTGTGTG-GAAATTTGATAATGAC-ATGTTCT-GCATATAAGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTATAAGACTAGTGTTATTCATCTTTAATTGGTTTAAAGGGTACCTAGACGGTAAAATAAGCC-TTAAGGG---------------------------------------------ACTAATTT-ACTAGAGTTACTTATGAGGGGGCTATTAGGTACT-AGT--GG---TGGAGAGATGAAATTCTTTGATACCT---TGCTTTGTAAAAGTGAA-CATGGCACAGATTAAGGCGTAAGCATCTCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCTTCGTATAACAAAAAGGATTAGGTACCCTCGTAG-TTGAAGGCAGACAATGATGAGTGTCATAGGGTAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTACCGTATAAATGATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Bapalmuia_palmularis_AY567781 ??????????????????----------???????????????AATGTATAGCGAAAGCTAACTATATCAGA----------------------------------------------------------------------------------------------------------------------------------TATAATATCGGTTTACCCGAATAAAATTCTGAGTG-AGAAAATGATGATGAC-ATTTCTT-GCTTATATGTCTTGACCAAATTATGTGCCAGCAGTCGCGGTAATACATAAAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAGATAAAGCC-TTAAGGA---------------------------------------------ACTCATCT-GCTAGAGTTACTTGTGAGGAAGCTATTAAGTACT-AATG-AG---TGTAGAGATGAAATTCTTTAATACCT---TCTTTCGAAA-GATTGGATATGGCACGGATTAAGGCGTAAGCATCTTCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCGTCAAATAACCAAAAGGATTAGGTACCCAAGTAG-TTGAAAGCAGACAATGATGAGTGTCATAGATTAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Byssolecania_variabilis_AY567780 ??TGGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGAATGGCGAAAGCTAGTAAAGTCAAG----------------------------------------------------------------------------------------------------------------------------------AAAGACATCGATTTACTCGAATAAAGTTCTATGGT-GAAGCTTGATAATGAC-AT-CTTT-GC-TATAAGTCTCGACTAAGCTACGTGCCAGCAGTCGCGGTAATACGTAGGAGGCAAGTGTTATTCATCTTTATTAGGTCTAAAGGGTACCTAGACGGCGTGTTAAGCC-TAGAGGG---------------------------------------------ACTGACATAGCTAGAGTTATTTGTGAGGGGGCC---AGGTACTAGT-CA----GTGTAGAGATGAAATTCTTTGATACGT---TTTTCGGTAG-ATACAT-CATGGCACGGGTCGCGGCGAAAGCTTCTCTTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCTTCATATAACCAAAAGGATTAGGTACCCTAGCAG-TTGAAAGCAGACAATTATGAGTGTCATAGATCAA----------------------------------------------------------------------------------------------------------------------------------------------------TCTTGTTTATAAACGATAGTGCATGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Byssoloma_leucoblepharum_AY567778 ??TAGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAATGTATAGCAAAAGCTAATT------------------------------------------------------------------------------------------------------------------------------------------CGTGATATCGATTTACTCGAATAAAATTCTGAGTG-AAATTATGATAATGAC-ATTTTTTTGCTTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACAGTAAATTAAGCC-TATAGGA---------------------------------------------ACTGATTT-TCTAGAGTTACAGATAAGGAAGCTTTAAGGTACT-ACTG-AG---TGTAGAGATAAAATTCTTTGATACCA---TTATTCGTAA-GATAGACTAAGGCACGGTTTTAGGCGAAAGCATCTTCTTATGCGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCGTCATATAACAAAAAGGATTAGATACCCTTGTAG-TTGACAGCAGACAATGATGAGTGTCATAGGTTAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTAGTCTATAAATTATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Byssoloma_marginatum_AY567777 AATAGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAATGCATGGCAAAAGCTAATC------------------------------------------------------------------------------------------------------------------------------------------AGTGATATCGATTTACTCGAATAAAATTCTGAGTG-AAATTATGATAATGAC-ATTTTTTTGCTTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATTAAGCC-ATTAGGG---------------------------------------------ACTGATTT-GCTAGAGTTACTTATAAGGAAGCTTTAAGGTACT-ACTG-AG---TGTAGAGATGAAATTCTTTGATACCT---TTGTTCGCAA-GATGAATTAAGGCACGGTTTTAGGCGAAAGCATCTTCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCGTCATATAACAAAAAGGATTAGGTACCCAAGTAG-TTGACAGCAGACAATGATGAGTGTCATAGGTTAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTATAAATGATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Byssoloma_meadii_AY567776 AATAGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAATGTATAGCAAAAGCTAATC------------------------------------------------------------------------------------------------------------------------------------------CGTGATATCGATTTACTCGAATAAAATTCTGGGTA-AAATTATGATAATGAC-ATTATCTTGCTTATGTGTCTTGACTAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATTAAGCC-AATAGGG---------------------------------------------ACTGATTT-GCTAGAGTTGTTTATAAGGAAGCTTAAAGGTACT-ACTG-AG---TGTAGAGATAAAATTCTTTGATACCT---TTGTTCGGAA-GACAAATTAAGGCACAGTTACAGGCGAAAGCATCTTCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCATCATATAACAAAAAGGATTAGGTACCCAAGTAG-TTGATAGCAGACAATGATGAGTGTCATAAGGTAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTTTATAAATGATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Byssoloma_sp_EU601737 AATAGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGCGAAAGCTAGTT------------------------------------------------------------------------------------------------------------------------------------------TTGA-CATCGGTTTACCCGAATAAAATTCTAGGCA-AAATTATGATAATGAC-ATTATTT---TTATATGTCTTGACCAAGTTACGTGCCAGCAGTCGCGGTAATACGTAAGAGACTAGTGTTATTCATCTTTATTAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-T---------------------------------------------------ACTAATTT-A-TAGAGTTATATATGAGAGAGCTTTAAGGTACT------GGTG-TGGAGAGATAAAATTCTTTGATACCT---------------------ATAGGCACGGATTAAGGCGTAGGCATCTCTTTATGTGT----------------------------------------------------------------------------------------------------------------------------------------TAA-CTG-CGTTGAAGGACGAAG------------------GA???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Byssoloma_subdiscordans_AY567779 AATAGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAATGTATAGCAAATGCTAATC------------------------------------------------------------------------------------------------------------------------------------------CGTGATATCGATTTACTCGAATAAAATTCTGGGTG-AAATTATGATAATGAC-ATTATTTTGCTTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACAGTAAATTAAGCC-TATAGGT---------------------------------------------ACTGGTTT-GCTAGAGTTACATATAAGGAAGCTTTAAGGTACT-ACTG-AG---TGTAGAGATAAAATTCTTTGATACCA---TTATTCGTGA-GATAGGTTAAGGCACGGTTTTAGGCGAAAGCATCTTCTTATGCGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCGTCATATAACAAAAAGGATTAGGTACCCAAGTAG-TTGACAGCAGACAATGATGAGTGTCATAGGTTAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTAGTCTATAAATGATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Calicium_viride_AY143402_AY340538 AATGGCCTAACGGCTGAA----------CCAGCAACTTGAATGAATGTATAGCATAAGCTAGTTGTATAACTATAAAAAATAGTAAG-------------------------------------------------------------------------------------------------------------------TGCAATATTGACTCGATCATATAAAGTTCTGGGTG-GA-TTATGATGATGAC-ATAATCT-GTCTATTTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAAAAGACTAGTGTTATTCATCTTTAATTGGTTTAAAGGGTACCTAGACGGCAAATTAAGCCCTTAACTAGGGA-----------------------------------------ACTAATAAGGCTAGAGTTTCATATAAGGGGGCATTAAAGTACT---GA-GAACGTAGAGAGATGAAATTCTGTGATACTATA-------------------TATGGCACTGGCGAAGGCGAAAGCATCCCATTATGTAA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAGGGACGAAGGCTTTGTGAAATAAAAAGGATTAGTTACCCAAGTAG-TCTCT-GCAGAAAATTATGAATGTCATAGGGTAGATAAAC----------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTTAAGAGTAATCCAACTGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGACCCCCTC----GGGGGCCCGAGTTGTAATTTGAAGAGGGTGTTTCGGG-CGAGGGGCCGGCCTAAGTCCCTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTATGCGGCCGGTG-ACCGGACCCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTATATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-TGTCGTCGGGTGATCAGCCGT----------CGTTCTCGGCGGTGCACTCGCCC-GTGCGCAGGCCAGCATCGGTTCGGGAGGTTGGATAAAGGCCCCGGGAATGTAGCTTCCTTC--GGGG--AGT-CTTAT-AGCCCGGGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCAAGGATGCTGGCGTAATGGTCGTAAGCGGCCCGTCTTG Calopadia_foliicola_AY567782 ????????????????????????????????????????AAGAACGCATAGCGAAAGCTAATTGTATGATA----------------------------------------------------------------------------------------------------------------------------------TACAATATCAATTTATTTGAATAAAGTTCTGTTTA-ATATAATGATGATGAC-ATATATT-AATCATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGTAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATAAAGCC-TATGGA----------------------------------------------ACTAATTT-ACTAGAGTTACTTACGAGGGAGCTAAAAAGTACT-GGT--GG---TGTAGAGATGAAATTTTATAATACCT---TTCTTCATAAGAGCAGT-GACGGCACAGATTAAGGCGAAAGCATCTCCCTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCTTCATAAAACAAAAAGGATTAGATACCCTTGTAG-TTGAAAGCAGAAAATGATGAGTGTCATAGATTAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Calopadia_lecanorella_EU601738_EU601751 AATGGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAACGAATAGCGAAAGCTAATT------------------------------------------------------------------------------------------------------------------------------------------GTCAATATCAATTTATTTGAATAAAGTTCTGATTA-ATATAATGATAATGAC-ATGTATT---TCATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGTAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-T---------------------------------------------------ACTGGTTT-A-TAGAGTTACTTACGAGGGAGCTAAAAAGTACT------GGTG-TGTAGAGATGAAATTTGATGATACCT---------------------GACGGCACAGATTAAGGCGAAAGCATCTCCCTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTG-CGTTGAAGGACGAAGG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CGGCAACAGCTCAAATTTGAAATCCGGCCTCTCT----CGGGGTCCGAGTTGTAATTTGCAGAGGGTGTTTCGGG-CGCGGGGCCGGTCCAAGTCCCCTGGAACGGGGCGTCGCAG-AGGGTGAGAATCCCGTCCGCGGCCGGCG-ACCAAGCCCGTGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAATGGGTGGTAAATTCCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACT-CGAGCGGGGGCGATCAGCGGT---------TCGTTCTCGACCGTGCACTCGTCC-CCGGGCGGGCCAGCATCGGTTCGGGCGGTCGGACAAAGGCGGCGGGAACGTAGCTCCCCCC--GGGG--AGT-GTTAC-AGCCCGCCGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTCGTCAGCGACCCGTCTTG Calopadia_sp_EU601739_EU601752 AATGGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAACGCATAGCGAAAGCTAGTT------------------------------------------------------------------------------------------------------------------------------------------GTTAATATCAATTTATTTGAATAAAGTTCTGTTTA-ATATAATGATGATGAC-ATATATT---TCATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGTAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATAAAGCC-T---------------------------------------------------ACTAATTT-A-TAGAGTTACTTACAAGGGAGCTAAAAAGTACT------GGTG-TGTAGAGATGAAATTCTATAATACCT---------------------GACGGCACAGATTAAGGCGAAAGCATCTCCCTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTG-CGTTGAAGGACGAAGGA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CGGCAACAGCTCAAATTTGAAATCTGGCTCCTT-----CGGGGTCCGAGTTGTAATTTGCAGAGGGTGTTTCGGG-CGCGGCGCCGGTCCAAGTCCCCTGGAACGGGGCGTCGCAG-AGGGTGAGAATCCCGTCCGCGGCCGGCG-ACCAAGCCCATGTGAAAGCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAATGGGTGGTAAATTCCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-TGACCGGGGGCGATCAGCGGC----------CGTTCTCGGCCGTGCACTCGTCC-CCGACCAGGCCAGCATCGGTTCGGGCGGTCGGATAAAGGCCGCGGGAATGTAGCTCCCCCC--GGGG--AGT-CTTAT-AGCCCGCGGTGCCATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTCGTCAGCGACCCGTCTTG Calopadia_subcoerulescens_EU601740 AATGGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAACGCATAGCGAAAGCTAGTT------------------------------------------------------------------------------------------------------------------------------------------GTTAGCATCAATTTATTTGAATAAAGTTCTGATTA-ATATAATGATAATGAC-ATAGATT---TCATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGTAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-T---------------------------------------------------ACTAATTT-A-TAGAGTTACTTACGAGGGAGCTAATAAGTACT------GGTG-TGTAGAGATGAAATTTTATGATACCT---------------------GACGGCACAGATTAAGGCGAAAGCATCTCCCTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTG-CGTTGAAGGACGAAG------------------G????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Candelaria_concolor_DQ986806_DQ986791 ??????????????????????????????????????????????GTATAGTGTAGACTAGTTGTATTAATTATTAA----------------------------------------------------------------------------------------------------------------------------TACAATATTGACTATGTTAAATAAAGTTCTAGATA-GAATAATGATCATGACAATTTTCT-ATCTATATGTCTTGGCTAAATCTCGTGCCAGCAGCCGCGGTAATACGAGGAAGACTAGTGTTATTCATCTTTATTAGGTTTAAAGGGTACCTAGACGGTATATTTAGCCCATCACAAGGT------------------------------------------ACGAATAT-ACTAGAGTTATATGTGAG-AAGG----AAGTACTCATAG------AGTAGAGATGAAATTTTATTATACTAT--------------------GAGGTGACTGGTTGAGGCGAAAGCAACCTTCTATGTAA-----------------------GTATGGTATGCACAGGTTAACACATGTAAGATATTAAGTTACGTATAAAGTTACATGTGTTAATATGTACTAATTTTTATTAATATGTACTAATTTCTATTAATATGTGCAAATAA-CTGACGTTGAGGGACGAAGGCCT-GGGTAGCAAATAGGATTAGATACCCTAGTAG-TCCAG-GCAGAAAATTATGAATGTTATAGACTAGATAGTAATCCAAAAGATAAGGAGAACAATAAATAAATTCTTTATAGCCTTTTAAGCCAATTCATCTTTATTAGGCTATTTAACCTTGTTTCTGGTGTGCCATACA-------------------------------------------GTTAGTGTATAAATAAAAGTGCAAGCATTCCACCTTAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGTCTCCA-----CGGGGCCCGAGTTGTAATTTGCAGAGGGCGCTTCGGG-TGCGGCACCGGTCTAAGTTCCTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTACGTGACTGGAT-GCCTAACCCATGTGAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAGAGCACGT????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Canoparmelia_caroliniana_AY584613_AY584634 ??TACCCTACGGCGTGAA----------CCAGCAACTTGGAGGAATGTATAGCAATTGCTACTTGCA-TCATTGTAGAGATGA-----------------------------------------------------------------------------------------------------------------------TGCAAGATCGACTAAGTTGAATAAAATTCTAGGTA-GAATTATGATGATGAC-ATTTTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATGTTTAATCGGTTTAAAGGGTACCTAGACGGTAGATCAAGCT-TTCAATAAGG------------------------------------------ACTAGTTT-ACTAGAGTTACTTATGAGGGGGTTGTAAAGTACT-GTT--GG---TGTAGAGATGAAATTCTGTCATACCT--CTTTTCAAAA-GAAAAAT-CACGGCACAGGTATAGGCGAAGGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAGGGACGAAGGCTTCGTGGAACAAACAGGATTAGATACCCCAGTAG-TTGAA-GCAGAAAATGATGAATGTCATAGATTAG---ATGTCTAA-----------G-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCTTC-----CCGGGTCTGAGTTGTAATTTGTAGAGAGTGTTTCGGG-CGAGACCGCGGTCTAAGTCCATTGGAACATGGTGTCATAG-AGGGTGAGAATCCCGTATGCGACCGTGG-TTCGAGCCCATGTGAAGCCTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCTGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGCCCGTAGGCGATCAGCCGCT--G--------TTCTCAGCGGTGCACTCGTTCTGCGATCAGGCCAGCATCGGTTTGGGCGGTCGGATAAAGGCCTTGGGAATGTAGCTTCCTTTCGGGGG--AGT-CTTAT-AGCCCTCGGTGCAATGCGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTCAGCGACCCGTCTTG Catolechia_wahlenbergii_DQ986811_DQ986794 ????????????????????????????CCAGCAACTTGGAAGAATGAATGGCAATAGCCAGTTACATTAGAACTTTTTTTT------------------------------------------------------------------------------------------------------------------------TGTGAAATCGACTCTGTCGAATAAAGTTCTGGGTG-GAGTATTGATAATGAC-AATCTCT-ATCTGTGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAAAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACTTAGACGGTAAATCAAGCCAAGACAGAAACGGT---------------------------------------ACTAATTT-ACTTGAGTATTATGTGAGGCGCAT--AAGGTTGTAT-TCTT-GAGAGAAGAGATGAAATTCTATCATCCGTT--------------------GAGGTTACGGGTAAAGGCGAAAGCGACCATCTATGTAA----------------------------------------------------------------------------------------------------------------------------------------ATA-CTGACGTTGAAGGACGAAGGCCTACGGTCATTAACAGGATTAGATACCCAAGTAT-TCGTG-GCAGACAATGATGAATGTCATAGACTAGAG-ATAAAT-------------------------------------------------------------------------------------------------------------------------------------------TTTAGTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTAAAATCCGGCTTCT-------CGGGTCTGAGTTGTAATTTACAGAGAGGATTTCGGA-GACGGGGACGGTCTAAGTTCTTTGGAACAGGACGTCATAG-AGGGTGAGAATCCCGTATGTGACCGGTTCCCCTACCCCACGTGAAACCTCTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-TGCCCGCGGGTGATCAGCCCC----------CCTTCGGGGTGGTGTACTCGCCC-GCGATCAGGCCAGCATCGGTTCAGGCGGTCAGATAAAGGCCCCGGGAAGGTTACTCGCTGC--GGGG--AGT-GTTAT-AGCCCGGGGCGCAATGCGGCCAGCCGGGACCGAGGACCGCGCTCC-GGCTAGGATGCTGGCGTAATGGTCGTAAGCGGCCCGTCTTG Cladonia_caroliniana_AY584614_AY584640 ??????CTAACGGCTGAA----------CCAGCAATTTGGAAGAATGTATAGCAATAGCTGATTGCA-CCAAC-AAACAGTTGA----------------------------------------------------------------------------------------------------------------------TGCAAAATTGATTATATCAAATAAAATTCTAGGTA-GATTTTTGATAATGAC-ATTGCTT-ACCTAA--GTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAAAAGACTAGTGTTATTCATCTTTAATTGGTTTAAAGGGTACCTAGACAGCGAATAAAGCC-ATTGTAGGG-------------------------------------------ACTAATTC-GCTAGAGTTACTTATGAGGGGGTATTAAAGTACT-GCA--GG---TGTAGAGATGAAATTTTGTTATACCT--TTTTTCGTAT-GAGAAAC-TATGGCACAGGTATAGGTGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAGGGACGAAGGCTTTGTGTCGCGAACAGGATTAGATACCCCAATAG-TCAAAAGCAGAAAATGATGAATGTCATAGATTAG---ATATACAA-----------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGTCCTTT-----CAGGACCCGAGTTGTAATTTGTAGAGGATGTTTCGGG-TGCGGCGCGGGTCTAAGTCCTTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTATGTGACCTGCG-ATCAAGCCCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTCCGCGGACGATCAACTCCC--G--------TTCTCGGGGGTGCACTCGTTC-GTGATCAGGCCAGCATCGGTTTGGGCGGTCGGATAAAGGCCTTGGGAATGTAGCTCCTTCC--GGGG--AGT-GTTAT-AGCCCTTGGTGCAATGCGGCCAGCCCAGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTG Crocynia_gossypina_AY567766 ??????CTAACGGCTGAA----------CCAGCAACTTGGATGAATGAATAGCTTTAGCTAATTGCA-CATGT---------------------------------------------------------------------------------------------------------------------------------TGCAATATCGATTTACTCGAATAAAATTCTGGGTT-TAATTATGATAATGAC-ATTATTT-ACCCATATGTCTTGACTAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATATTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TTACGGG---------------------------------------------ACTAATTT-ACTAGAGTTACTTACGCGGGGGCTATAAAGTACT-GAT--GG---TGTAGAGATAAAATTTTTTAATACCA--TTTTTTGGAA-GGAA-GT-GATGGCACTGATAAAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCTTTGGGTCGCGAATAGGATTAGATACCCTTATAG-TCAAA-GGAGACAATGATGAGTGTCATAGATTAT----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Crocynia_pyxinoides_AY584615_AY584653 AATAGCCTAACGGCTCGA----------CCAGCAACTTGGATGAATGAATAGCTTTAGCTAATTGCAC------------------------------------------------------------------------ATGTACGTGA----------------------------------------------------TGCAATATCGATTTACTCGAATAAAATTCTGGGTT-TAATTATGATAATGAC-ATTATTT-ACCCATATGTCTTGACTAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATATTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TT-----------------------------------------ATACGGG--ACTAATTT-ACTAGAGTTACTTACGCGGGGGCTATAAAGTACT-GAT--GG---TGTAGAGATAAAATTTTTTAATACCA--TTTTTTGGAA-GGAAAGT-GATGGCACTGATAAAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGGGTCGCGAATAGGATTAGATACCCTTATAG-TCAAA-GGAGACAATGATGAGTGTCATAGATTAG---AAATTAAC-----------T-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCACTCCACCTCAAGAGTAATCCAACCGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTAAAATCCGGCGCTCA-----CGGCGCCCGAGTTGTAATTTGCAGAGGATGTTTTGGGGCGCGGCGGCGGCCTAAGTTCCTTGGAACAGGGCGTCTGAG-AGGGTGAGAACCCCGTATGTGGCCGGCA-GCCAAGCCCGTGTAAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAATGGGTGGTAAATTCCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTCGCAACCAGACCCTGCCCGCGGGCGGTCAACGGTG--------GGGTTCCCACCG-CGCACTCGTCC-GCGATCAGGCCAGCATCGGTTCTGGCGACCGGACAAAGGCCTGGGGAATGTAGCTCCCTCT--GGGG--AGT-GTTAGCAGCCCCAGGTGGAATACGGCCAGCCGGGATCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTGAGCGACCCGTCTTG Fellhanera_bouteillei_AY567787 AATGGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAACGTATAGCAAAAGCTAGTTACCTCTAAG---------------------------------------------------------------------------------------------------------------------------------GTAAATATCGATATACTCGAATAAAGTTCTAAATA-GAATTATGATAATGAC-ATATTTT-ATTTATTAGTCTTGACTAATTTGCGTGCCAGCAGTCGCGGTAATACGCATAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACAGTAAATAAAGCC-CCAAGGA---------------------------------------------ACTCATTT-ACTAGAGTTAAATATGAGGGAGCTATCAGGTACT-AGT--GG---TGTAGAGATGAAATTCTTTGATACTT---CGCTTCGCGA-GAGTAAACATGGCACAGATAGAGGCGTAAGCATCTCCTTATAGCA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCTTCGTATAACAAAAAGGATTAGATACCCTCGTAG-TTGAAAGCAGAAAATGATGAGTGCCATAAGGTAT----------------------------------------------------------------------------------------------------------------------------------------------------TTTACTTTATAAACGATAGTGTAAGCATTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Fellhanera_paradoxa_EU601742 AATGGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGCGAAAGCTAATT------------------------------------------------------------------------------------------------------------------------------------------TTAAATATTGGTTTACCCGAATAAAATTCTGAGCG-GAAAAATGATGATGAC-ATTTTCT---TCAAATGTCTTGACCAAATTATGTGCCAGCAGTCGCGGTAATACATAAAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATAAAGCC-T---------------------------------------------------ACTAATTT-G-TAGAGTTACTTGTGAGGGGGCTATTAAGTACT------GGTG-TGTAGAGATGAAATTCTTTGATACC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Fellhanera_sp_EU601741 AATGGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAATGTATAGCGAAAGCTAGTT------------------------------------------------------------------------------------------------------------------------------------------TAAAATATCGATTTA-TCGAATAAAGTTCTAAGTA-TAGTTATGATAATGAC-ATTTTAT---TTATAAGTCTTGACCAATTTGCGTGCCAGCAGTCGCGGTAATACGCATAAGACGAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACAGTAAAAAAAGCC-A---------------------------------------------------ACTTTTTT-A-TAGAGTTATATATGAGGGAGCTATTAGGTACT------AATG-TAGTGAGATGAAATATGTAGACACCT---------------------AATGGCACAGATTAAGGCGCAAGCATCTCCTTATTTAA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Fellhanera_subtilis_AY567786 AATGGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAATGTATAGCAAAAGCTAGTTACTTCAATG---------------------------------------------------------------------------------------------------------------------------------GTAAATATCGATATAATCGAATAAAGTTCTAAGTG-GGATTTTGATAATGAC-ATATCCT-ATTTATGAGTCTTGACTAATTTGCGTGCCAGCAGTCGCGGTAATACGCATAAGACAAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACAGTAAGTAAAGCC-TCAAGGT---------------------------------------------ACTAATTT-ACTAGAGTTACTTATGAGGGGGCTATTAGGTACT-AGT--GG---TGGAGAGATGAAATTCTTTGATACCT---CGCTTCGCAA-GAGTAAACATGGCACAGATAGAGGCGTAAGCATCTCCTTATGGGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCTTCATATAACAAAAAGGATTAGGTACCCTCGTAG-TTGAAAGCAGAAAATGATGAGTGTCATAAAGTAG----------------------------------------------------------------------------------------------------------------------------------------------------TTTACTTTAAAAACGATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Fellhanera_viridisorediata_AY567775 AATGGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGCGAAAGCTAATCCACTTAAT----------------------------------------------------------------------------------------------------------------------------------TGTGATATCGGTTAAATCGAATAAAATTCTTGGCA-G-ATAATGATAATGAC-ATTATTT-GTTGATATGTCTTGACCAAAATACGTGCCAGCAGTCGCGGTAATACGTAGAAGACAAGTGTTATTCATCATTAGTGGGTTTAAAGGGTACCTAGACAGTATATCAAGCC-TTCTGGT---------------------------------------------ACTAATAT-ACTAGAGTTACTTATGAGGGAGCTTCAAGGTACT-GGTG-TG---TGTAGAGATAGAATTCTTTGATACCT---TTATTCGCAA-GATACA-GATGGCACAGCCAAAGGCGAAAGCATCTTCCTATGGGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCTTCATATAACAAATAGGATTAGAGACCCTAGTAG-TTGAATGCGGAAAATGGTGAGTGTCATAGGTTAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTATCCTATAAATGATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Gypsoplaca_macrophylla_DQ899299_DQ899298 ??TAGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGCAATAGCTAGTTGTA-TCAAC-AAACAGTTGA----------------------------------------------------------------------------------------------------------------------TACAAGATCGACTATGTCGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-ACCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAAAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TGTAAACAAGGG----------------------------------------ACTAATTT-ACTAGAGTTACTTGCGAGGGGGTTTTAAAGTACT-GCC--GG---TGTAGAGATGAAATTCTGTGATACCT--CTTTTCCAAG-GAAAAAT-TATGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTTTGTCGTGAACAGGATTAGATACCCAAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG---ATATATAT-G---------A-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCTCAAAG---CGGGGCCCGAGTTGTAATTTGTAGAGGGTGTTTCGGG-TGACGCGCCGGTTTAAGTCCTTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTACGTGACC-GTG-ACCGACCCCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCTGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTCGCGACCAGACC-TGTCCGTAGGTGATCAACCGCC--GGGTCGGTATTCTCGGCGGTGTACTCGCCT-GCGATCAGGCCAGCATCGGTTCGGGCGGTCGGATAAAGGCCTTGGGAATGTAGCTCCTTCC--GGGG--AGC-CTTAT-AGCCCTCGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTCGTGAGCGACCCGTCTTG Halecania_alpivaga_AY756368 ????????????????????????????????CAACTTGGGGGAATGTATAGCGAAAGCTTATTG-----------------------------------------------------------------------------------------------------------------TATTATA-----------------TACAATACCGAATTATTTGGCTAAAATTCCGGGTG-G-GTTTTGATAATGAC-ATTACCT-ATTTGTATGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTTAAAGACTAGTGTTATTCATGTTAAGTCGGTTTAAAGGGTAACTAGACGGTAAATCAAGCCATAAAAAGGA-------------------------------------------ACTAATTT-ACTAGAGTTTAATATAAGGGAGCATAAAAGTACTGA----TGG--TGTAAAGATGAAATTTGTTGATACCA--------------TA-T---AT-GGCACAGGTAAAGGCGAAAGCATCTTCTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------AAA-CTGACGTTGAGGGACGAAGGCTTTGTGCAGCAATTAGGATTAGAGACCCTAGTAG-TCTTA-GCAGAAAATGATGAATGTTATAGGGTAG---------------------------------------------------------------------------------------------------ATTG-T-------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCATGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Lasallia_papulosa_DQ986891_DQ883691 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGCGAAAGCTAATTGTATTAGCGGGTAATGTTTAA---------------------------------------------------------------------------------------------------------------------TACAATATCGACTCTGTCGAGTAAAATTCTAGGTA-GAGTAATGATAATGAC-ATTTTTT-ACCTATGTGTCTTGACCAAGTCACGTGCCAGCAGTCGCGGTAACACGTGGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCCAGACGGTATATTTAGCCCGGAAAAGGT-------------------------------------------ACTAAATAAACTAGAGTTTAATGTGAGGGGGTTCAATAGTACT-AACG-G----TGTAGAGATGAAATTCTATCATACCAA--------------------TAGGAGACTGGTAGCGGCGAAAGCAACCTTTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------AAA-CTGACGTTGAAGGACGAAGGCTA-GTGTAACCAAAAGGATTAGGTACCCCAGCAG-TGCTG-GCAGAAAACGCTGAATGCCATAGATTAGA--TTATA--------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCCAATTTGAAATCTGGCCCCCCCCCC-GGGGGTCCGAGTTGTAATTTCCAGAGGGTGCTTCGGG-CGCGGCCCCGGTCCAAGTTCCTTGGAACAGGACGTCCCAG-AGGGTGAGAATCCCGTACACGGCCGGCG-GCCCAGCCCGTGTGAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAGGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGGCCAGACC-TGCCCGCGGGCGATCAGCCGT----------CCTTCGGGGCGGTGCACTCGCCC-GCGGCCAGGCCAGCATCGGTTCGGGCGGCCGGATAAAGGCCCCGGGAACGTGGCTCCCCCC--GGGG--AGT-GTTAT-AGCCCGGGGCGCAATGCGGCCAGCCCGGACCGAGGACCGCGCCCC-GGCGAGGATGCTGGCGTAATGGCCGTAAGCGACCCGTCTTG Lasioloma_arachnoideum_AY567783 ??TGGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGCGAAAGCTAATTTACCAAG-----------------------------------------------------------------------------------------------------------------------------------TGCAATATCAATTTACTTGAATAAAGTTCTGAGTG-AAATTATGATGATGAC-ATGCTTT-GCTCATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGTAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGCAAATTAAGCT-TTTAGGA---------------------------------------------ACTAATTA-GCTAGAGTTACTTACGAGGGAGCTTATAGGTACT-GGT--GG---TGGAGAGATGAAATTCTTTGATACTT---TTCTTTGATATAGCAGT-GACGGCACAGATTAAGGCGAAAGCATCTCCTCATGTGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCTTCATGTAACGAAGAGGATTAGGTACCCTTGTAG-TTGAAGGCAGACAATGATGAGTGTCATAGATTAG----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Lecanora_achariana_DQ972976_DQ973027 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGCAATAGCTAATTGCA-TCAAT-GTTTAAATAATTGA------------------------------------------------------------------------------------------------------------------TGCAATATCGACTCTGTTGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-ACCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TGCAATATGGG-----------------------------------------ACTAATGT-ACTAGAGTTACTTACGAGGGGGTATTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTGTCATACCT--CGTTTCGGAA-GAAACAC-TATGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTAGCGAACAGGATTAGATACCCCAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG---ATGTATAG-----------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCATAAGCTCAAATTTGAAATCTGGCCCCTT-----CGGGGTCCGAGTTGTAATTTGTAGAGGATGTTTCGGG-TGCGGCGCCGGTCTAAGTCCCTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTATGTGACCGGCG-ACCAACCCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTCCGCGGGCGATCAGCCTCT--G--------TTCTCAGGGGTGCACTCGTCC-GCGATCAGGCCAGCATCGGTTCGGGCGGCCGGATAAAGGCCTTGGGAATGTAGCTCCTCTC--GGGG--AGT-GTTAT-AGCTCTCGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGCCTTG Lecanora_contractula_DQ986898_DQ986746 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGCAATAGCTAATAGCA-TCAAT-GTTTAAATAATTGA------------------------------------------------------------------------------------------------------------------TGCAATATCGACTATGTCGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGGAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTGTATCAAGCC-TGAAATATGGG-----------------------------------------ACTAATAT-GCTAGAGTTACTTACGAGGGGGTATTAGAGTACT-ATT--GG---TGTAGAGATGAAATTCTGTCATACCT--CGTTTCACGG-GAAACAT-TACGGCACAGATATAGGCGAAAGCATCTCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTAGCGAACAGGATTAGTTACCCCAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG---ATATATAA-----------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCCTT-----CGGGGTCCGAGTTGTAATTTGTAGAGGAGACTTCGGG-CGCGGCGCCGGTCTAAGTCCCTTGGAACAGGGCGTCACAG-AGGGTGAGAATCCCGTACGTGACCGGTG-ACCAACCCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTCCGTGGGCGATCAACCTCT--G--------TTCTCAGGGGTGCACTCGTCC-GCGATCAGGCCAGCATCGGTTTGGGCGGTCGGATAAAGGCCTTGGGAACGTAGCTCCCCTC--GGGG--AGT-GTTAT-AGCCCTCGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTG Lecanora_hybocarpa_DQ912273_DQ782910 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGCGAAAGCTAATTGCA-CTAAC-AAATAGTTGA----------------------------------------------------------------------------------------------------------------------TGCAATATCGACTCAGTCGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-ATCATAGGG-------------------------------------------ACTAATTT-ACTAGAGTTACTTACGAGGGGGTATTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTGTCATACCT--CTTTTCGAAA-GAAAAAT-AATGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTAGCGAACAGGATTAGATACCCCAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG---ACATCTAA---------TAG-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCCTT-----CGGGGCCCGAGTTGTAATTTGGAGAGGGTGTTTCGGG-CGCGGCGCCGGTCTAAGTCCCTTGGAACAGGGCGTCACAG-AGGGTGAGAATCCCGTATGTGACCGGCG-GCCAAGCCCATGCGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGCCCGTGGGCGATCAGCCTCC--G--------TTCTCGGGGGTGCACTCGCTC-GCGATCAGGCCAGCATCGGTTCGAGCGGCGGGATAAAGGCCTTGGGAACGTAGCTCCCCTC--GGGG--AGT-GTTAT-AGCCCTCGGTGCAATGCCGCCCGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTCAGCGACCCGTCTTG Lecanora_intumescens_AY567715_AY300841 ??TAGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGCAATAGCTAATTGCA-CCAAC---------------------------------------------------------------------------------------------------------------------------------TGCAATATCGACTATGTCGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TTAGGGG---------------------------------------------ACTAATTT-ACTAGAGTTACTTGTGAGGGGGTATTAAAGTACT-AAT--GG---TGTAGAGATGAAATTCTGTCATACCT--ATTTTCGGAA-GAAAA-T-TATGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCTTTGTGTCGCGAACAGGATTAGATACCCCAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCTCTT-----CGGGGTCCGAGTTGTAATTTGTAGAGGGTGTTTCGGG-CGCGGCGCCGGTCTAAGTCCCTTGGAACAGGGTGTCACAG-AGGGTGAGAATCCCGTACGTGACTGGCG-ACCAACCCCATATGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-TGTCCGTCGGCGATCAGCCTCT--G--------TTTTCAGGGGTGCACTCGTCG-GCGATCAGGCCAGCATCGGTTTGGACGGCGGGATAAAGGCCTTGGGAATGTGGCTCCCCTC--GGGG--AGT-GTTAT-AGCCCTGGGTG-AATGCCGCCCGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTCGTAAGCGACCCGTCTTG Lecanora_paramerae_EF105418_EF105422 ??????????????????????????????????????????????????AGCGAAAGCTAATTGCA-CTAAC-AAATAGTTTA----------------------------------------------------------------------------------------------------------------------TGCAATATCGACTTAGTCGAATAAAATTCTAGGTA-GGATTATGATAATGAC-ATTGCCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TTCAAAGGG-------------------------------------------ACTAGTTT-ACTAGAGTTACTTATGAGGGGGTATTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTGTGATACCT--CTTTTCGAAA-GAAAAAT-AATGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTAGCGAACAGGATTAGATACCCCAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG---ACATATAA---------TAG-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAAT??????????????????????????????????????????????????????????????????????????????????????????????????????????????????GCGCCGGTCT-AGTCCCTTGGAACAGGGCGTCACAG-AGGGTGAGAATCCCGTATGTGACTGGCG-ACCAACCCCATGCGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTCCGCGGGCGATCAACCTTC--G--------TTCTCGGGGGTGCACTCGTCC-GCGATCAGGCCAGCATCGGTTCGGGCGGCGGGATAAAGGCCTTGGAAATGTAGCTCCTCTC--GGGG--AGT-GTTAT-AGCCCTCGGTGCAATGCCGCCCGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTG Lecanora_polytropa_DQ986807_DQ986792 ????????????????????????????CCAGCAACTTGGAGGAATGTTTAGCAATAGCTAGTTGCA-TCAAT-GTTTAAATAATTGA------------------------------------------------------------------------------------------------------------------TGCGATATCGACTATGTCGAATAAAATTCTAGGTA-GAGTTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTATATCAAGCC-TGCAATACGGG-----------------------------------------ACTAATGT-ACTAGAGTTACTTACGAGGGGGTATTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTGTCATACCT--CATTTCGTAA-GAAATAC-TACGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTAGCGAACAGGATTAGATACCCCAATAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG---ACATATAG-----------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGGAATCTGGCCCCTT-----CGGGGTCCGAGTTGTAATTTGTAGAGGATGTTTCGGG-TGCGGTCCCGGTCTAAGTCCCTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTATGCGACCGGCG-GCCAACCCCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-TGTCCGCGGGCGATCAACCTCT--G--------TTCTCAGGGGTGCACTCGTCC-GCGATCAGGCCAGCATCGGTTCGGGCGGCCGGATAAAGGCCTTGGGAATGTGGCTCCCTTC--GGGG--AGT-GTTAT-AGCCCTCGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTCGTAAGCGACCCGTCTTG Lecanora_sulphurea_EF105419_EF105423 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATATTGACTTTGTCAAATAAAATTCTAGGCA-GAATTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TAAAAAGGGGG-----------------------------------------ACTAATTT-ACTAGAGTTACTTGTGAGGGGGCACTAAAGTACT-GAT--GG---TGTA?AGATAAAATTCTGTAATACCT--TTTTCGTAAA-GAAAA-C-AATGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTAGCGAACAGGATTAGATACCCTAGTAG-TCGAA-GCAGAAAATGATGAATGTCATAGATTAG---ACATCTAA-----------G-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????CGCCGGTCT-AGTCCCTTGG?ACAGGGCGTCACAGCAGGGTGAGAATCCCGTACGTGACCGGTG-ACCAACCCCACACGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTCCGCCGGCGATCAGCCTCC--G--------TTCTCGGGGGTGCACTCGTCG-GCGATCAGGCCAGCATCGGTTCGGGCGGCGGGATAAAGGCCCTGGGAATGTGGCTCCCCTC--GGGG--AGT-GTTAT-AGCCCTCGGTGCAATGCCGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTG Lecidea_silacea_DQ986878 ????????????????????????????CCAGCAACTTGGAGGAATGTATGGCAATAGCTGGTTGCATTAACTAAAAGTTAG------------------------------------------------------------------------------------------------------------------------TGTAAGATCGACTCTGTCGAATAAAATTCTAGATA-GAGTTTTGATAATGAC-ATTATCT-ATCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAAAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACTTAGACGGTAAATCAAGCCCCAATAGGGA-------------------------------------------ACTAATAT-ACTAGAGTTTGATGTAAGGAAGCATGAAAGTACTGT----TGG--TGTAGAGATAAAATTCTATCATACCA--------------AA-T---AT-GGCACAGGTTTAGGCGAAAGCATCTTCTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTCTCGAACAGGATTAGATACCCCAGTAG-TCTAA-GCAGACAATGATGAATGTCATAGATTAG---------------------------------------------------------------------------------------------------ATTTAA-------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Lepraria_coriensis_EU601743_EU601753 AATAGCCTAACGGCTGAA----------CCAGCAACTTGAAGGAATGTATAGCGAAAGCTAATT------------------------------------------------------------------------------------------------------------------------------------------GTCAATACCGATTTATTCGGCTAAAATTCTGGGTA-GAGTTTTGATGATGAC-ATTACCT---CTACATGTCTTGACCAAATTCTGTGCCAGCAGTCGCGGCAATACAAAGAAGACTTGTGTTATTCATGTTAAGTCGGTTTAAAGGGTAACTAGACGGTAAATTAAGCC-T---------------------------------------------------ACTAATTT-A-TAGAGTTTAATATAAGGGAGCATAAAAGTACT------GATG-TGTAGAGATGAAATTCGTTGATACCT----------------------ATGGCACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TTGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC--CGT-----TGAGGTCCGAGTTGTAATTTGTAGAGGATGCTTCGGG-AGACGGACCGGCCTAAGTTCCTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTCTGCGGTCGGTG-TCTGAGCCCGCGAGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTATGTGAAATTGTTGAAAGGGAAGCGCCTGCGACCAGACC-TGTCTGCGGGTGATCACCTGT----------CGTTCTCGGCGGGGTACTCGCCC-GTCAGCAGGCCAGCATCGGTTTTGGCGGTCGGATAAAGGCCATGGGAATGTACCTACCCTCC-GGGGA-AGG-CTTAT-AGCCCAAGGTGCAATGCGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTCGTCAGCGACCCGTCTTG Lepraria_coriensis_EU601744 AATAGCCTAACGGCTGAA----------CCAGCAACTTGATGGAATGTATAGCGAAAGCTAATT------------------------------------------------------------------------------------------------------------------------------------------GTCAATACCGATTTATTCGGCTAAAGTTCTGGGTA-GAGTTTTGATGATGAC-AATACCT---CTATATGTCTTGACCAAATTCTGTGCCAGCAGTCGCGGCAATACAAAGAAGACTTGTGTTATTCATGTTTAGTCGGTTTAAAGGGTAACTAGACGGTAAATCAAGCC-A---------------------------------------------------ACTAATTT-A-TTGAGTTTAATATAAGGGAGCATTAAAGTACT------GATG-TGTAGAGATGAAATTCGTTGATACCT----------------------ATGGCACAGGTTTAGGCGAAAGCATCTCCTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------AAA-CTG-CGTTGAAGGACGAAG------------------G---AG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Lepraria_coriensis_EU601745_EU601754 AATAGCCTAACGGCTGAA----------CCAGCAACTTGATGGAATGTATAGCGAAAGCTAATT------------------------------------------------------------------------------------------------------------------------------------------GTCAATACCGATTTATTCGGCTAAAGTTCTGGGTA-GAGTTTTGATGATGAC-AATACCT---CTATATGTCTTGACCAAATTCTGTGCCAGCAGTCGCGGCAATACAAAGAAGACTTGTGTTATTCATGTTTAGTCGGTTTAAAGGGTAACTAGACGGTAAATCAAGCC-A---------------------------------------------------ACTAATTT-A-TTGAGTTTAATATAAGGGAGCATTAAAGTACT------GATG-TGTAGAGATGAAATTCGTTGATACCT----------------------ATGGCACAGGTTTAGGCGAAAGCATCTCCTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------AAA-CTG-CGTTGAAGGACGAAGGAGA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AGCGGCAACAGCTCAAATTTGAAATCTGACTTCCTT----CGGGGTCCGAGTTGTAATTTGTAGAGGATGCTTCGGG-TGACGGACCGGCCTAAGTCCCTTGGAACAGGGTGTCATAG-AGGGTGAGAATCCCGTCTGTGGTCGGCG-CCTGACCCTGTAAGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTATGTGAAATTGTTGAAAGGGAAGCGCCTGCGACCAGACC-TGTCTGCGGGCGATCACCCGT----------CGTTATCGGCGGGGTACTCGCCC-GTCAGCAGGCCAGCATCGGTTTTGGCGGCCGGACAAAGGCGCCGGGAATGTACCTTCCCTCC-GGGGA-AGG-CTTAT-AGCCCGGTGTGCAATGCGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTCGTCAGCGACCCGTCTTG Lepraria_coriensis_EU601746 AATAGCCTAACGGCTGAA----------CCAGCAACTTGATGGAATGTATAGCGAAAGCTAATT------------------------------------------------------------------------------------------------------------------------------------------GTCAATACCGATTTATTCGGCTAAAGTTCTGGGTA-TAGTTTTGATGATGAC-AATACCT---CTATATGTCTTGACCAAATTCTGTGCCAGCAGTCGCGGCAATACAAAGAAGACTTGTGTTATTCATGTTTAGTCGGTTTAAAGGGTAACTAGACGGTAAATCAAGCC-A---------------------------------------------------ACTAATTT-A-TTGAGTTTAATATAAGGGAGCATTAAAGTACT------GATG-TGTAGAGATGAAATTCGTTGATACCT----------------------ATGGCACAGGTTTAGGCGAAAGCATCTCCTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------AAA-CTG-CGTTGAAGGACGAAG------------------G---AGA??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Lepraria_incana_DQ986812_DQ986795 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGCAATAGCTGATTGCA-CCAAC-AAATAGTTGA----------------------------------------------------------------------------------------------------------------------TGCAATATTGACTCTGTCAAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATATGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TTCACGGGG-------------------------------------------ACTAATTT-ACTAGAGTTACTTACGAGGGGGTATTAAAGTACT-GCA--GG---TGTAGAGATGAAATTCTGTCATACCT--CTTTTCAAAA-GAAAAAC-TATGGCACAGGTATAGGTGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTCGCGAACAGGATTAGATACCCCAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG---ATATATAG-----------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAATGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGTCCTTT-----TAGGCCCCGAGTTGTAATTTGTAGAGGATGTTTCGGG-TGCGGCGCGAGTCTAAGTCTTTTGGAACAGGGCGTCACAG-AGGGTGAGAATCCCGTATGCGACCCGCG-ACCAAGTCCATATGAAACGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAGTTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTCCGCGGGCGATCAGTCTCC--G--------TTCTCGGGGGTGCACTGGTCC-GCGATCAGGCCAGCATCGGTTCGGGCGGCCGGATAAAGGCCTTGGGAATGTAGCTCCCTTC--GGGG--AGT-CTTAT-AGCCCTCGGTGCAATGCGGCCAGCCTGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGATGTAAGCGACCCGTCTTG Lepraria_lobificans_DQ986887_DQ986768 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGCAATAGCTTATTGCA-CCAAC-AAATAGTTGA----------------------------------------------------------------------------------------------------------------------TGTAATATTGACTCTGTCAAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATATGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAGATCAAGCC-TTCGCAGGG-------------------------------------------ACTAATTT-ACTAGAGTTACTTACGAGGGGGTATTAAAGTACT-GCA--GG---TGTAGGGATGAAATTCTGTCATACCT--CTTTTCGAAA-GAAAAAT-TATGGCACAGGTATAGGTGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTCGCGAACAGGATTAGATACCCCAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG---ATAAATAG-----------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAATGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGTCCTCT-----CCGGCCCCGAGTTGTAATTTGTAGAGGATGTTTCGGG-TGCGGCGCGGGTCTAAGTCCTTTGGAACAGGGCGTCGTAG-AGGGTGAGAACCCCGTATGCGACCCGTG-GCCAACCCCATACGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTCCGCGGGCGATCAACCTCC-CG--------TTCTCGGGGGTGCACTCGTCC-GCGACCAGGCCAGCATCGGTTCGGGCGGTCGGATAAAGGCCTTGGGAATGTAGCTCCCTCC--GGGG--AGT-CTTAT-AGCCCTGGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTCAGCGACCCGTCTTG Lepraria_usnica_AY300894_AY300843 ??????????????????????????????????????GGAAGAATGTATAGCGAAAGCTA-GT-CA-ACCTC-------------------------------------------------------------------------AAAAACTGAG----------------------------------------------GGTGATATCGATTTACTCGAATAAAATTCTGAATA-AAATTATGATAATGAC-ATATTTT-ATTTATAAGTCTTGACCAATTTGCGTGCCAGCAGTCGCGGTAATACGCATAAGACAAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACAGTAAGATAAGCC-TTTT------------------------------------AAAAGGA-----ACTATTTT-ACTAGAGTTACTTATGAGGGGGCTATTAGGTACT-GGT--GG---TGTAGAGATGAAATTCTTTGATACCTCGCTTTGTAAAAAGTAAA---CATGGCACAGATTAAGGCGTAAGCATCTCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAGGGACGAAGGCTTCATATAACAAAAAGGATTAGGTACCCTCGTAGTTGAAA-GCAGAAAATGATGAGTGCCATAAGGTAG---GTAAACA------------------------------------------------------------------------------------------------------------------------------------------TTTACTTTATAAACGATAGTGTAAGCACTCCACCTCAAGAGTAAT??????????????????????????????????????????????????????????????????????????????????????????????????GGTGTTTCGGG-CGCGGTACCGGTTCAAGTCCCCTGGAACGGGGCGTCATGG-AGGGTGAGAATCCCGTACGTGACCGGAG-TCCAAGCCTGGGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAATGTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-TGCGCGGGGGCGATCAGCGGCC--G--------TTCTCGGCCGTGCACTTGTCC-CCGATCAGGCCAGCATCGGTCCGGGCGGTCGGACAAAGGCCGCGGGAATGTAGCTCCCCAC--GGGG--AGT-GTTAT-AGCCCGCGGCGTAACGCGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCAAGGATGCTGGCGTAATGGTCGTCAGCGACCCGTCTTG Lepraria_usnica_EU601747 AATGGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAATGTATAGCGAAAGCTAGTC------------------------------------------------------------------------------------------------------------------------------------------AATGATATCGATTTACTCGAATAAAATTCTGAATA-AAATTATGATAATGAC-ATATTTT---TTATAAGTCTTGACCAATTTGCGTGCCAGCAGTCGCGGTAATACGCATAAGACAAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACAGTAAGATAAGCC-T---------------------------------------------------ACTATTTT-A-TAGAGTTACTTATGAGGGGGCTATTAGGTACT------GGTG-TGTAGAGATGAAATTCTTTGATACCA---------------------CATGGCACAGATTAAGGCGTAAGCATCTCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAGGGACGAAG------------------G--TAGGTACCCTCGTAG-TTGAAAGCAGAAAATGATGAGTGCCATAAGGTAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTACTTTATAAACGATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Letrouitia_domingensis_AY584619_AY584648 AATAGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAATGTATAGCGAAAGCTAGTTGCGCTTTTTTATAAG---------------------------------------------------------------------------------------------------------------------------TGCAAAATCGACAAGTTCGAATAAAATTCTGGGTA-GA-TTTTGATAATGAC-ATTTTCT-ATTTATA-GTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGCAGACTAGTGTTATTCATCTTTAATTGGTTTAAAGGGTACTTAGACGGTAAATAAAGCCTGAAAGGGG--------------------------------------------ACACATTT-GCTAGAGTTAAATATGAGGGAGTTTGAAAGTACT-TTTG-G----TGTAGAGATGAAATTTTTTGATACCAAA-------------------CACGGCACAGATATAGGCGAAAGCATCTTCTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTATCGCAAACAGGATTAGATACCCTAATAG-TCTAA-GCAGACAATGATGAATGTCATGGATTAGA-------------------TTTAG---------------------------------------------------------------------------------------------------------------------------TTTAATCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACTGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCCTTCTA----TAGGGTCCGAGTTGTAATTTGTAGAGGATGTTTCGGG-CACGGAGCCGGTCTAAGTTCCTTGGAACGGGGCGTCATAG-AGGGTGAGAATCCCGTCTGTGCCCGGCG-ACCAAGCCTATGTGAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAGTTTCATCTAAGGCTAAATATCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTAACCAGACC-TGCCCGGGGGTGATCAGCCGC----------CGTTCTCGGCGGTGCACTTGCAC-CCGATCAGGCCAGCATCGGTTCGGGCGGCCGGACAAAGGCGGTGGGAACGTAGCTCCTCTC--GGGG--AGT-GTTAT-AGCCTGCGGCGGCATGCGGCCAGCCCGGATCGAGGACCGCGCTCC-GGCTAGGATGCTGGCGTAATGGTTGCAAGCGGCCCGTCTTG Lobaria_pulmonaria_AY340504_AF183934 AATAGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGAAAGGCAATAGCTGATTGCATTAAATTTAAAATTAGAGTTTTTTTTATTTTTAA-----------------------------------------------------------------------------------------------------TGTAGTTACTACTTTGTAGTTTAAATTTCTAGGTA-GAATTATGATGATGAC-ATTATCT-ATCTATAGGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACAAGTGTTATTCATCTTTATTAGGTTTAAAGAGTACCAAGACGGTTAATAAAGCCCAAAATACATGAGCACAGGGG--------------------------------ACACATTA-ACTAGAGTTATATGAAAGGAAGCATTAAGGTACT-GTTG-AG---TGTAGAGATAAAATTCAGTCATACCAGATG-----------------AAAGGCACAGATTTATGCGAAGGCATCTTCTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGTAGGACGAAGGCTT-TTGAAGTGAAGAGGATTAGATACCCTTGTAA-TTTAA-GCAGAAAATGATGAATGTCATAGGTTTAATATATACAGCCCAAAAAAAAAAGGGTCGATG--------TTTTA-------------------------------------------------------------------------------------------------------TTGGGTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGACCCCTG-----CGGGGCCCGAGTTGTAATTTGTAGAGGGTGTTTCGGG-CGCGGCGCCGGTCTAAGTTCCTTGGAACAGGACGTCGCAG-AGGGTGAGAATCCCGTATGTGACCGGTG-ATCAAGCCCATGTGAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGGACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACC-GGTCCGGGGGTGATCAGCCGC--------TGCTCGTCAGCTGGTGCACTCGCCC-CCGATCCGGCCAGCATCGGTTTGGGCGGTGGGATAAAAGCCCCGGGAATGTAGCTTCTTTC--GGGG--AGT-CTTAT-AGCCCGGGGTGCAATGCTGCCCGCCTGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGCAAGCGACCCGTCTTG Megalospora_tuberculosa_AY584623_AY584650 AATAGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGCAATAGCTAATTGTGCTAAAATTTTTTAG-------------------------------------------------------------------------------------------------------------------------TATAAAATCGACCCTGTCGAATAAAATTCTGGGTA-GAATTATGATAATGAC-ATTGTCT-ATTCATAAGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAACACGTAGCAGACGAGTGTTATTCATCTTTAATAGGTTTATGGGGTACTTAGACGGTAGATCAAGCCAGCCTCAAAAAGGG---------------------------------------ACTAATTT-GCTAGAGTTTTATGTGAGGAAGTATTAAGGTACT-GGTG-G----TGTAGAGATGAAATTCGATGATACCTTG-------------------AATGGCACAGGTATAGGCGAAAGCATCTTCTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTAAAAGACGAAGGCTTTGTGTCTCGAACAGGATTAGATACCCTAGTAG-TCAAA-GCAGACAATGATGAATGTCATATATTGGATTTAAA--------------TTTA---------------------------------------------------------------------------------------------------------------------------TTCAATATATAAATGAAAGTGTAAGCATTCCACCTTAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCTCCT-----CGGGGCTCGAGTTGTAATTTGTAGAGGATGTTTCGGG-CGCGACACCGGTCTAAGTCTCTTGGAACGGGGCGTCATAG-AGGGTGAGAATCCCGTATGTGACCGGCG-ATCAAGCCCGTGTGAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-TGCTTCCGGGCGATCAGCCGT----------CCTTCTGGGCGGTGCACTCGCCC-GTAGACAGGCCAGCATCGGTTTCGGCGGCCGGATAAAGACCTCGGGAAGGTAGCTCCTCTC--GGGGG-AGT-GTTAT-AGCCCTTGGTGCAATGTGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCATAATGGTCGTAAGCGGCCCGTCTTG Mycoblastus_sanguinarius_DQ912276_DQ912333 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGCAATAGCTGATTGCA-CCAAC-------------------------------------------------------------------------AAATAGTTGA----------------------------------------------TGCAATATCGACTCTGTCGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACAGCAAATCAAGCC-AT--------------------------------------AGTAGGG-----ACTAATTT-GCTAGAGTTACTTGTGAGGGGGTATTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTGTCATACCT--TTAT-CGAAA-GAAAAAC-GACGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTCGCGAACAGGATTAGATACCCCAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGGTTAG---ATCA-TA------------------------------------------------------------------------------------------------------------------------------------------TTTATCCTATAAATGAAAGTGCAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCCCTG----GGGAGCCCGAGTTGTAATTTGCAGAGGATGTTTCGGG-CGCGGCGCCGGTCTAAGTCCCTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTCTGTGACCGGCG-ACCAAGCCCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCTGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTCGCCACCAGACC-TGTCCCTGGGCGATCAGCGGCG--G--------TTCTCCGCCGTGCACTCGTCC-GGGATCAGGCCAGCATCGGTTCGGGCGGTCGGATAAAGGTCGCGGGAACGTAGCTTCCCTC--GGGG--AGT-CTTAT-AGCCCGCGGTGCAATGCGGCCCGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCATAATGGTGGTGAGCGACCCGTCTTG Neophyllis_melacarpa_AY340511_AY340556 AATAGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGTGAAAACTACTTACATTAATTGTTTGA---------------------------------------------------------------------------------------------------------------------------TGCAAGATCGACTTAGTTGAATAAAATTCTGAGTAAGAATTATGATTATGAC-ATTGTCT-ACTCATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATTGGTTTAAAGGGTACCTAGACGGCAAATAAAGCC-TTAGTAGGA-------------------------------------------ACTAATTT-GCTAGAGTTTCTTGTGAGGGGGCATTAATGTACT-AAT--GG---TGTAGAGATGAAATTTTGTGATACCT--TTTTTCGAAT-GAAGAGA-TATGGCACTGGTATAGGCGAAAGCATCTTCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------AAA-CTGACGTTGAGGGACGAAGGCTTTGTGTAGCGAATAGGATTAGATACCCTAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG---ACATAA-------------G-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCTATTC---CAGGGTCCGAGTTGTAATTTGCAGAGGGTGTTTCGGG-AGCGGC-CCGGTCTAAATCCTTTGGAACAGGGTGTCATAG-AGGGTGAGAATCCCGTACGTGACCGGTG-ACCAACCCCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGCCC-CGGGTGATCAGCGGC---------T-GTTCTCAGCCGTGCACTCGCCC-GCGATCAGGCCAGCATCGGTTCTGGCGGTCGGATAAAGGCCCGGGGAATGTAGCTCTCTTC--GGGG--AGT-GTTAT-AGCCCCGGGTGCAATGCGGCCAGTCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTCAGCGACCCGTCTTG Niebla_cephalota_DQ986893_DQ986762 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGCTACGGCTAATTGTGTTTAACTA-------------------------------------------------------------------------------------------------------------------------------CACGATATCGGCTCTGTCGAATAAAATTCTGGATA--AATTATGATGATGAC-ATTTTTT-ATCCATGTGTCTTGACCAAATTGTGTGCCAGCAGTCGCGGTAATACATAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC--CTAGACGG------------------------------------------GACTAATTT-GCTAGAGTTACTTATGAGGGGGCTTTAAAGTACT-AAT--GG---TGTAGAGATAAAATTTTGTAATACCA--TTTTTCGTAAAGAAAAGT-TATGGCACTGGTAAAGGTGAAAGCATCCCCCTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGGATCGCGAATAGGATTAGATACCCTAGTAG-TCAAA-GCAGAAAATTATGAGTGTCATAGATTAG---ATAATACT-----------G-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCACTCCACCTCAAGAGTAATCCAACCGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCCGTC----CGGGGTCCGAGTTGTAATTTGTAGAGGATGCTTCGGG-TGCGGCACCGGTCTAAGTCCCTTGGAACAGGGCGTCATAG-AGGGTGAGGATCCCGTATGTGACCGGCG-ACCAAGTCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTAACCAGACC-TGCCGTCGGGTGTTCCGCGGGC----------ACTCGTGCCCGCCTACTCACCC-GCGATCAGGCCAGCATCGGTTTTGGCGGCCGGATAAAGACTCGAGGAATGTAGCTTCGCTTC-GGGG-AAGT-GTTAT-AGCCTCCTGTGCAATACGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGCAAGCGACCCGTCTTG Parmelia_saxatilis_AY340514_AY300849 TA?A-CCTA--GG-GGGA----------CCGGCAACTTGGAGGAATGTATA?GAATAGCTACTGGCA-TCATC-CTTTTCTCAT----TTTATTCTTCTCGTTTTCTTCTTCTTAAGAAGAAAATGAGAAGAATAAAAAGAGAAAAGTAAAGATGA----------------------------------------------TGCAAGATCGACTATGTCGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATGTTTAATCGGTTTAAAGGGTACCTAGACGGTAAATCAAGCT-TTCAAAGAAAAAGAAGACAAAATTGATAGTATAGTGATAATTAAAGG-----ACTAATTT-ACTAGAGTTACTTATGAGGGGGTATTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTGTCATACCT--CTTTTCAAAA-GAAAAAT-GATGGCACAGGTATAGGCGAAGGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAGGGACGAAGGCTTTGTGTAGCGAACAGGATTAGATACCCCAGTAG-TCTAA-GCAGAAAATGATGAATGTCATAGATTAG---ATATATAA-----------G-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCATGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCATCAGCTCAAATTTGAAATCTGGCTCCTT-----CGGGGTCCGAGTTGTAATTTGTAGAGAGTGCTTCGGG-GGAGAGTGCGGTCTAAGTCCGTTGGAACACGGCGTCATAG-AGGGTGAGAATCCCGTATGCGACCGCGG-CTCGAGCCCGTGTGAAGCCTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCTGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTGGCAACCAGACC-TGTCCGTAGGTGATCAGCCGCT--G--------TTCTCAGTGGTGCACTCGCTCTGCGATCAGGCCAGCATCGGTTCTGGCGGTCGGATAAAGGCCTTGGGAATGTAGCTTCACTTTGGGGG--AGT-CTTAT-AGCCCTCGGTGCAATGCGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTCAGCGACCCGTCTTG Peltigera_aphthosa_AY340515_AF286759 AATATTGGTCAATAGCCTAACGGCTGAACCAGCAACTTGGAGGAATGTAAGGCAATAGCCTAATGCATTATTTTAA------------------------------------------------------------------------------------------------------------------------------TGTTTAATCGACCATGTCGAATAAAATTCTAGGTA-GAGTTTTGACAATGAC-ATTCTCT-ATCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAAAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGAGTACCAAGACGGTTAATAAAGCCCCTAAAGGGT-------------------------------------------ACAAGTTA-ACTAGAGTTATATGAAAGGGAGCTCTTAGGTACTGT-----TGAGTGTAGAGATGAAATTCTGTGATACCAG-----------------ATGATTGGCACGGGTCTATGCGAAGGCATCTCCTTATGTAATA-----------------------------------------------------------------------------------------------------------------------------------------ACTGACGTTGTAGGACGAAGGCTT-TTGAAGTGAACAGGATTCGATACCCCAGTAA-TCTAG-GCAGAAAATGATGAGTGTCATAGGTTAAATATAA----------------------------------------------------------------------------------------------------------------------------------------------TTTAGTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAAT????CAGGGATTGCCTTAGTAGCGGCGAGTGAAGCGGCAACAGCTCACATTTGAAATCCGATCCTATT--CTTGGGACCAGAGTTGTAATCTGCAGAGGGTGTTTCGGG-TGTGGCTCTGGTTTAAGTTCCTTGGAACAGGGCGTCATAG-AGGGTGAGAACCCCGTCTGTAATCAGTAGTTTTAGCCTATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGGCCAGACC-TGCGCGTAGGTGATCAGTTGGTA---------TCTTTTACCAATGCACTGACC-TACAGCCAGGCCAGCATCGGTTTCGGCGGCGGGACAAAAGCGTGGAGAATGTAACTCTCTCTTGGGTG--AGTACTTAT-AGCTCGTCATGACATGCCGCCAGCTGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGCAAGCGACCCGTCTTG Pertusaria_amara_AY300900_AF274101 ????????????????????????????????CAACTTGGAGGAATGTATAGCGTAAGCTAGTTGTATTAATTAATAGTTAA------------------------------------------------------------------------------------------------------------------------TGCAGCATCGACTCTGTCGACTAAAGTTCTGGATA-GAA-TTTGATAATGAC-ATTTTCT-ATCTATGTGTCTTGACCAAATCACGTGCCAGCAGTCGCGGTAATACGTGGAAGACTAGTGTTATTCATCTTTAATGGGTTTAAAGGGTACCTAGACGGTATATTCAGCCCAAATAATATGAGAGGGT-----------------------------------ACTGATTAAACTACAGTTTTATGCGAGGGGGT----GTGTACTAGTG-G-----AGTAGAGATGAAATTCA?TCATACCA---------------------TTATGAACAGGCAACGGCGAAAGCAACCCTTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------AAA-CTGACGTTGAAGGACGAAGGCTC-A?TACACCAACAGGATTAGATACCCTAGCAG-TCTGA-GCAGACAATGATGAGTGTCATAGACAAGAAAGATAAAAAAGGAAGAATAAAATATTCTTC-------TTTTTA-------------------------------------------------------------------------------------------------------TTTTGTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAAT????????????????????????????????????????????????????????????????????????????????GAGTTGTAATTTGTAGAGGGTGTTTCGGG-CGCGGCGCCGGCCTAAGTCCCTTGGAACAGGGCGTCCCAG-AGGGTGAGAGTCCCGTCTGCGGCCGGCC-GCCTACCCCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACT-TGCCCGCGGGGGATCAGCCTC----------CCTTCGGGGGGGTGCACTCCGCC-GCGGTCAGGCCAGCATCGGTTCGGGCGGCCGGATAAAGGCGCCGGGAACGTGGCTCCCTTC--GGGG--AGT-GTTAT-AGCCCGGCGCGCAATGCGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTCGTCAGCGACCCGTCTTG Physcia_aipolia_DQ912290_DQ782904 ????????????????????????????CCAGCAACTTGGAGGAACGTATAGCGAAAGCTAGTTGCA-TTTAATTT-----------------------------------------------------------------------AAAAA-TTGG---------------------------------------------TGCAGAATTGATTCTATCAAATAAAGTTCTAGGTA-GG-TTATGATGATGAC-ATTTCCT-ATCTATAGGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAACACGTAGAAGACGAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAACCCAGTC-CAA--------------------------------------AAAGGAT----ACTAGTTT-GCTAGAGTTTAATGTGAGGGGGCTCTAAAGTACT-GATA-AG---TGTAGAGATGAAATTCTGTGATACAA--TTTTCGGACA-GGTAAA-----------------GGCGAAAGCATCTCATTATGTAA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAGGGACGAAGGCTAGGAGAAGCAAAAAGGATTAGATACCCAAGTAG-TCTTA-GGAGAAAATTATGAATGTTATAGGATGG---AAATAGTGGATAACAATTTT-----------------------------------------------------------------------------------------------------------------------------TTTA-TCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTTCTT-----CGGAGTCCGAGTTGTAATTTGTAGAGGGCGTTTCGGG-CGAGGCGCCGGCCTAAGTTCCTTGGAACAGGACGTCATAG-AGGGTGAGAATCCCGTATGCGGCCGGTG-ACCGACCCCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGATC-CGTCTCCGGGTGATCAACCTCC--G--------TTTTCGGGGGTGCACTCGCCC-GGTTATGGGCCAGCATCGGTTTGGGCGGTTGGATAAAGGCCGGAGGAACGTAGCTCCCTCC--GGGG--AGT-GTTAT-AGCC-TCGGTGCCATGCTGCCAGCCCGGACCGAGGAACGCGCTTC-GGCGAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTG Pilocarpaceae_genus_et_sp_nov_EU601736_EU601749 AATAGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGTGAAAGCTAATT------------------------------------------------------------------------------------------------------------------------------------------GTCGGTATCGATTGACTCGAATAAAATTCTGGGTG-G-ACTATGATAATGAC-ATTATCT---TCAAGTGTCTTGACCAAACTACGTGCCAGCAGTCGCGGCAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACAGCAGATAAAGTC-A---------------------------------------------------ACTAATCT-G-TAGAGTTATTTTTGAGGGGGCTATAATGTACT------GGTG-TGTAGAGATGAAATTCAGTTATACCA---------------------TACGG-ACAGTTCAAGGCGAAAGCATCTCCTTATCGAA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTG-CGTTGAAGGACGAAGGA???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CAAATTTGAAATCTGGTCCGTT-----CCGGGCCCGAGTTGTAATTTGCAGAGGGAGTTTCGGG-CGCGGCGCGGGTCTAAGTCCCTTGGAACAGGGCGTCACAG-AGGGTGAGAGTCCCGTATGTGCCCCGCG-ACCAAGCCTGTGCGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAACGGGTGGTAAATTCCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-CGCCCGGGGGGGATCAGCGGC----------CGTTCTCGGCCGTGCATTC-CCC-CCCACCGGGCCAGCATCGGTTCGGGCGGTCGGACAAAGGCTGCGGGAACGTACCTCCCTTTCGGGGG--AGT-CTTAT-AGCCCGCGGTGCAATGCGACCAGCCTGGACCGAGGACCGCGCTTC-GGCTTGGATGCTGGCGTAATGGTCGTCAGCGACCCGTCTTG Pleopsidium_gobiense_DQ991755_DQ883698 ????????????????????????????CCAGCAACTTGGGGGAATGTATAGCGAAAGCTAGTTGTATTAACTATTAGTTAA------------------------------------------------------------------------------------------------------------------------TGCAAGATCGATTACGTCGAATAAAGTTCTAGGTA-GAATAATGATGATGACAATTTTTT-ACCTATATGTCTTGACCAAATCTCGTGCCAGCAGTCGCGGTAATACGTGGGAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTATTTCTAGCCCAAAATAGGGT------------------------------------------ACGGATTT-ACTAGAGTTTTATGTGAGGAGGGG----AGTACTTGTG-G-----AGTAGAGATGAAATTTTTTTATACTAT--------------------GAGGAAACTGGTGGCGGCGAAAGCAACCTTCTATAT-A----------------------------------------------------------------------------------------------------------------------------------------TAAACTGACGTTGAGGGACGAAGGCTT-GGGTAGCAAATAGGATTAGATACCCTAGTAG-TCCAA-GCAGACAATTCTGAATGCCATAGATTAGA-------------------TTATT---------------------------------------------------------------------------------------------------------------------------TTTGGTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAAT????CAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCTTC-----CAGGGTCCGAGTTGTACTTTGTAGAGGATGCTTCGGG-TACGGCTCCGGTCTAAGTTCCTTGGAACAGGACGTCATAG-AGGGTGAGAGTCCCGTATGTGACTGGCC-GCCAGGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAACCGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT-TGCCCGCGGGTGATCAGCCGGT----------ATTCTTACCGGTGCACTCGCCC-GTGGTCAGGCCAGCATCGGTTTGGGCGGTTGGATAAATGCCCCTGGAACGTAGCTCCTCCC--GGGG--AGC-GTTAT-AGCCTGGGGTGCAATGCGGCCTGCCCAGACCGAGGACCGCGCTTC-GGCTAGGGT???????????????????????????????? Polysporina_simplex_AY853337_AY640961 AATATTGGTCAATAGCCTAACGGCTGAACCAGCAATTTGGGGGAATGTATAGCGAAAGCTAGTTGTATTAACTAATAGCTAA------------------------------------------------------------------------------------------------------------------------TGCAAGATCGACTACGTCGACTAAAGTTCTAGGTA-AAATAATGATGATGACAATTTTTT-ACCTATATGTCTTGACCAAGCCTCGTGCCAGCAGTCGCGGTAATACGTGGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTATTTCTAGCCCAAAACAGGGT------------------------------------------ACGGGTTT-ACTAGAGTTTTATGTGAGAAGGGG----AGTACTCATGG------AGTAGAGATGAAATTTTGTGATACTAT--------------------GAGGAAACTGGTGGCGGCGAAAGCAACCTTCTATGTATAA-----------------------------------------------------------------------------------------------------------------------------------------ACTGACGTTGAAGGACGAAGGACC???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ACAGCTCAAATTTGAAATCTGGCCCCTC----TCGGGGTCCGAGTTGTAATTTGCAGAGGATGCTTCGGG-TTCGGCTCCGGTCTAAGTTCCTTGGAACAGGACGTCACAG-AGGGTGAGAATCCCGTATGTGACCGGCC-GCCACGCCTGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT-TGCCCGCGGGTGATCAGCCGGTG----------TTCTCACCGGTGCACTCGCC-CGCGGTCAGGCCAGCATCGGTTTGGGCGGCCGGACAAAGTCCCCCGGAATGTGACTCCCTCC--GGGG--AGT-GTTAT-AGCCGGGGGTGCAATGCGGCCCGCCTGGACCGAGGACCGCGCTTCGCGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTG Porpidia_albocaerulescens_DQ986871_DQ986757 ????????????????????????????CCAGCAACTTGGAAGAATGTACGGCAATAGCTGGTTGCATTAAAAGAATTTAG-------------------------------------------------------------------------------------------------------------------------TGCAAAATCGACTCTGTCGAATAAAATTCTAGATA-GAATTATGATAATGAC-ATTATCT-ATCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAAAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACTTAGACAGTAAATAAAGCCTTAAAAGGGT-------------------------------------------ACTAATTT-ACTAGAGTTTGATGTAAAGAAGTATGAAAGTACT-GTTG-G----TGTAGAGATAAAATTCTATCATACCAAA-------------------TATGGCACAGGTTTAGGCGAAAGCATCTTCTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTCGCGAACAGGATTAGATACCCCAGTAG-TCTAA-GCAGACAATTATGAATGTCATAGATTAGAT-TTAA---------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAAT?????????ATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGACCCCTT-----CGGGGCCCGAGTTGTAATTTGTAGAGGACGCTTCGGG-TGCGGCGCCGGTCTAAGTTCCTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTATGCGACCGGCG-ACCAACCTCATGTGAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGCCCGCGGGCGATCAACCGT----------TATTCTTAGCGGTGCACTCGCCC-GCGATCAGGCCAGCATCGGTTCGAGCGGCCGGATAAAGGCTCCGGGAATGTAGCTCCCTCC--GGGG--AGT-CTTAT-AGCCCGGGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTG Porpidia_speirea_DQ986865_DQ986758 ????????????????????????????CCAGCAACTTGGAGGAATGTATGGCAATAGCTGGTTGCATTAACAAAAAGTTAG------------------------------------------------------------------------------------------------------------------------TGTAAGATCGACTCTGTCGAATAAAATTCTAGATA-GAATTATGATAATGAC-ATTATCT-ATCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAAAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACTTAGACGGTAAATAAAGCCCGAAGAGGGA-------------------------------------------ACTAATAT-ACTAGAGTTTGATGTAAGGAAGCATGAAAGTACT-GTT--GG---TGTAGAGATAAAATTCTATCATACCA----------------AA---TATGGCACAGGTTTAGGCGAAAGCATCTTCTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTCTCGAACAGGATTAGATACCCCAGTAG-TCTAA-GCAGACAACGATGAATGTCATAGATTAG---ATTTAA-------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGACCCCTT-----CGGGG{CT}CCGAGTTGTAATTTGTAGAGGA?GTTTCGGG-TGCGGCGCCGGTCTAAGTTCCTTGGAACAGGACGTCATAG-AGGGTGAGAATCCCGTATGCGACCGGCG-ACCAACCCCA?GTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT?AAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TG{CT}CCCTGGGCGATCAACCGTT--A--------TTCTTAGCGGTGCACTCGTCC-T{CT}GTTCAGGCCAGCATCGGTTCGGG?GGCCGGATAAAGGCCCCGGGAATGTAGCT?C?TTC--GGGG--AGT-CTTAT-AGC?CGGGG{CT}GCAATGCGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCATAATGGTTGTAAGCGACCCGTCTTG Protoparmelia_badia_EF105420_EF105425 ?????????????????????????????C-GCGCCTTGGAGGA-TGTATAGCAATAGCTGATTGCA-CCAAC-AAACAGTTGA----------------------------------------------------------------------------------------------------------------------TGCAATATCGACTATGTCGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAACATACGTGCCAGCAGTCGCGGTAATACGTAAAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TTTTACCTTAGGG---------------------------------------ACTAATTT-ACTAGAGTTACTTGTGAGGGGGTTTTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTGTCATACCT--CTTTTCGTAA-GAAAAAC-TATGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAGGGACGAAGGCTCTTTGTCGCGAACAGGATTAGTTACCCCAGTAG-TCAGA-GCAGAAAATGATGAATGTCATAGATTAG---ATAAATAA----------TA-----------------------------------------------------------------------------------------------------------------------------TTTACTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCTGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTCCGTGGGTGATCAGCCGCC--G--------TTCTCGGTGGTGCACTCGCCT-ACGATCAGGCCAGCATCGGTTCGGGCGGTCGGACAAAGGCCTTGGGAATGTAGCTCCTCTC--GGGG--AGT-CTTAC-AGCCCTCGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTG Pyrrhospora_quernea_AY300908_AY300858 ??TAGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGAATAGCAATAGCTAATTGCA-TCAGT-TATATCTTGA----------------------------------------------------------------------------------------------------------------------TGCAGTATCGATTTTATCGAATAAAATTCTAGGTA-GAATTATGATGATGAC-ATTGTCT-ACCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTGAATCAAGCC-TGCAAATAGGG-----------------------------------------ACTAATTT-ACTAGAGTTACTTGTGAGGGGGCATTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTATAATACCT--TTTCCTCAA--GAAA--T-AATGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTAGCAAACAGGATTAGATACCCTGGTAG-TCGAA-GCAGAAAATGATGAATGTCATAGATTAG---ACGTA--------------G-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCGAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCTTTTT-----GGGGTCCGAGTTGTAATTTGTAGAGGGTGTTCCGGG-TGCGGCGCCGGTCTAAGTCCCTTGGAACAGGGCGTCACAG-AGGGTGAGAATCCCGTATGCGACCGGTG-GCCAACCCCGCGCGGAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-TGTCCGTCGGCGATCAACCTCT--G--------TTCTCAGGGGTGCACTCGTC--GCGATCAGGCCAGCATCGGCTCGGGCGGTGGGATAAAGGCCTTGGGAACGTAGCTTCCCCTCGGGGGGAAGT-GTTAT-AGCCCTTGGTGCAATGCCGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTCGTCAGCGACCCGTCTTG Ramalina_complanata_DQ972986_DQ973038 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGCTACGGCTAATCGTGTATAACTA-------------------------------------------------------------------------------------------------------------------------------CACGATATCGACTCTGTCGAATAAAATTCTGGGTA--AATTATGATGATGAC-ATTTTCT-ACCCATGTGTCTTGACCAAATTGTGTGCCAGCAGTCGCGGTAATACATAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGG-------------CTAGACGGG------------------------------------------ACTAATTT-GCTAGAGTTACTTATAAGGGGGCTTTAAAGTACT-AGT--GG---TGTAGAGATAAAATTTTGTAATACCA--TTTTTCGTAGAGAAAAAT-TATGGCACTGGTAAAGGTGAAAGCATCCCCCTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGGGTCGCGAATAGGATTAGATACCCTAGTAG-TCAAA-GCAGAAAATTATGAGTGTCATAGATTAG---ATAATAAA-----------G-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCACTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCCGCC----CGGGGTCCGAGTTGTAATTTGTAGAGGATGCTTCGGG-TGCGGCACCGGTCTAAGTCCCTTGGAACAGGGCGTCATAG-AGGGTGAGGATCCCGTATGTGACCGGCG-ACCAAGCCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTAACCAGACC-TGCCGTCGGGTGCTCCGCGGGC----------ACTCTTGCCCGTCTACTCACCC-GCGATCAGGCCAGCATCGGTTTCGGCGGCCGGATAAAGACTCGAGGAATGTAGCTTCGCTTC-GGGG-AAGT-GTTAT-AGCCTCCTGTGCAATACGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGCAAGCGACCCGTCTTG Rhizocarpon_geographicum_AF483187_AY853389 AATAGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAATGAATGGCAATAGCCAGTTACATTAAAACAAATCTTTAG----------------------------------------------------------------------------------------------------------------------TGTGAAATCGACTCTGTCGAATAAAGTTCTGGATG-GAATATTGATAATGAC-ATTTTCT-GTTTATTTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAAAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACTTAGACGGTAAATCAAGCCAAGATAGAAAAGGT---------------------------------------ACTAATTT-ACTTGAGTATAATGTGAGGTGAATATATGGCAGT-ATTC-TTGAGAGAAGAGATGAAATTCTGTCATCCGTT--------------------GAGGTTACGGGTAAAAGCGAAAGCGACCATCTATGTAA----------------------------------------------------------------------------------------------------------------------------------------ATA-CTGACGTT-AAGGACGAAGGCCTACGGTAATTAACAGGATTAGATACCCAAGTAT-TCGTG-GCAGACAATGATGAATGTCATAGACTAGAGG-TAAAA-------------------------------------------------------------------------------------------------------------------------------------------TTTAGTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTAAAATCTGGCCCTCC-----TGGGGTCCGAGTTGTAATTTGTAGAGAGGATTTCGGG-CGCGGTGCCGGTCTAAGTTCCTTGGAACAGGGTGTCATAG-AGGGTGAGAATCCCGTATGTGACCGGCG-TCCAACCCCAGGTGAAGCCTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGCCCGCGGGTGATCAGCCGT----------CCTTCTGGGCGGTGCACTCGCCC-GTGATCAGGCCAGCATCGGTCCGGGCGGCCGGATAAAGGCCCCGGGAATGTGGCTCCCTCC--GGGG--AGT-GTTAT-AGCCCAGGGTGCAATGCGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTG Rhizoplaca_melanophthalma_DQ787352_DQ787351 ????GCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGCAATAGCTAATTGCA-TCAAT-GTTTAAATAATTGA------------------------------------------------------------------------------------------------------------------TGCAATATCGACTCTGTCGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TGCAATATGGG-----------------------------------------ACTAATGT-ACTAGAGTTACTTACGAGGGGGTATTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTGTCATACCT--CATTTCATAA-GAAATAC-TATGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAAGGACGAAGGCTTTGTGTAGCGAACAGGATTAGATACCCCAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG---ACATATAATA---------G-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAAT????CAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCCGACTCCTT-----CGGGGTCCGAGTTGTAATTTGTAGAGGATGTTTCGGG-TGCGGCGCCGGTCTAAGTCCCTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTATGTGACCGGTG-ACCAACCCCATGTGAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTCCGTAGGCGATCAACCTCT--G--------TTCTCAGGGGTGCACTCGTCT-GCGATCAGGCCAGCATCGGTTCGGGCGGCCGGATAAAGGCCTTGGGAATGTGGCTCCTCTC--CGGG--AGT-GTTAT-AGCCCTCGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTG Rinodina_tephraspis_DQ912293_DQ912345 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGCGAAAGCTAGTTGCATTTAATTTAGCTTAATTTATTAAGCTAAGTTGG------------------------------------------------------------------------------------------------------TGCAGGATTGACTATGTCGAATAAAGTTCTAGGTG-GG-TTATGATGATGAC-ATTTCCT-ATCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAACACGTTGTAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGCGTACCTAGACGGTAAATCAAGTCCGATAAGGAT-------------------------------------------ACTAATTT-TCTAGAGTTTAATATGAGGGGGCATTAAAGTACT-GATA-AG---TGTAGAGATAAAATTCTGTGATACAATA-------------------TACGGCACTGGTAAAGGCGAAAGCATCTCATTATGTAA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAGGGACGAAGGCTATGTGTAGCAAAAAGGATTAGATACCCAAGTAG-TCTTA-GCAGAAAATTATGAATGTCATAGGATGGAAAGTTGGGTCTCAATAAATATAGAATGGACAAGATCAACAAATT-------------------------------------------------------------------------------------------------------TTTTTTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCCTT-----CGGGGTCCGAGTTGTAATTTGTAGAGGGTGTCTCGGG-CGCGGCGCCGGCCTAAGTTCCTTGGAACAGGACGTCGTAG-AGGGTGAGAATCCCGTATGCGGCCGGCG-ACCAAGTCCATGTGAGACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCTGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTGTTCGGGTGATCAGCCAC----------CGTTCTCGGTCGTGCACTCGCCC-GGTTACAGGCCAGCATCGGTTTGAGCGGTGGGAAAAA-GCTACGGGAATGTAGCTCCCTTC--GGGG--AGT-GTTAT-AGCTCGTACGCGTATGCCGCCAGCTTGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTG Speerschneidera_euploca_AY300912_AY300862 ??????????????????????????????????????GAAGGAATGTATAGCGAAAGCTAATTGTA-TTATATTTA-----------------------------------------------------------------------------------------------------------------------------TACAATACCGATTTATTCGGCTAAAATTCTGGGTA-GA-TTTTGATAATGAC-ATTAGCT-ATCCATATGTCTTGACCAAATTTTGTGCCAGCAGTCGCGGCAATACAAAAAAGACTTGTGTTATTCATGTTAAGTCGGTTTAAAGGGTAACTAGACGGTAAACCAAGCC-AATAGAGGG-------------------------------------------ACTAGTTT-ACTTGAGTTTAATATAAGGGAGCATAAAAGTACT-GATA-GG---TGTAGAGATGAAATTCGTTGATACCA-------------------TATATGGCACAGGTTTAGGCGAAAGCATCTCCTTATGT-A----------------------------------------------------------------------------------------------------------------------------------------AAAACTGACGTTCAGGGACGAAGGCTATGTGCAGCAAACAGGATTAGATACCCTGGTAG-TTTTA-GCAGAAAATGATGAATGTTATAGGGTAG---ACTCTT-------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCATGAGTAAT????????????????????????????????????????????????????????????????????????????????????????????????AGGATGTTTCGGG-TGATGGGCCGGCCTAAGTTCCTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTCTGTGGTCGGTC-TCGGACCCCGTCAGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTATGTGAAATTGTTGAAAGGGAAGCGCCTGCGACCAGACC-TGTCTTCGGGTGTTCACCCGCCG----------TTCGCGGCGGGGCATTCGCCC-GATAGCGGGCCAGCATCGGTCTTGGCGGCCGGCTAAAGGCCCTGGGAACGTACCTACCCCCC-GGGG-AAGG-CTTAT-AGCCCGGGGTGCAATGCGGCCAGCCGGGACCGAGGATCGCGCTTC-GGCGAGGATGCTGGCGTAATGGTCGTAGGCGGCCCGTCTTG Sphaerophorus_globosus_DQ986866_DQ986767 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGTGAAAACTACTTGCACAATAATTATTTAG-------------------------------------------------------------------------------------------------------------------------TGTAAGATCGACTCAGTTGAATAAAATTCTGAGTA-GAATTATGATTATGAC-ATTGTCT-ACTCACATGTCTTGACTAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATTGGTTTAAAGGGTACCTAGACGGCAAATCAAGCC-TTAGTTGGG-------------------------------------------ACTAGTTT-GCTAGAGTTTCTTGTGAGGGGGCATTAATGTACT-AAC--GG---TGTAGAGATAAAATGTTGTGATACCT--CTTTTCGAAT-GAGGAGA-TTTGGCACTGGTATAGGCGAAAGCATCCCCTTATGTG-----------------------------------------------------------------------------------------------------------------------------------------TAAACTGACGTTGAGGGACGAAGGCTTTGTGTCGCGAATAGGATTAGATACCCTAGTAG-TCAAA-GGAGAAAATTATGAATGTCATAGATTAG---ACATAT-------------G-----------------------------------------------------------------------------------------------------------------------------TTTAGTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCCTT-----CGGGGCCCGAGTTGTAATTTGTAGAGGACGTTTCGGG-TGCGGC-CCGGTCTAAGTCCCTTGGAACAGGGCGTCATAG-AGGGTGAGAATCCCGTATGTGACCGGTG-ACCAACCCCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTGGCAACCAGACC-TGCCC-CGGGCGATCAGCGGG---------T-GTTCTCACCCGTGCACTCGCCC-GCGATCAGGCCAGCATCGGTTTCGGCGGTCGGATACAGACCCGGGGAACGTGGCTCTCTTC--GGGG--AGT-GTTAT-AGCCCCGGGTGCAATGCGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTCAGCGACCCGTCTTG Sporopodium_antoninianum_AY567785 ?????????????????????????????????????????????????TAGCGAAAGCTAGTAACCCTAAA----------------------------------------------------------------------------------------------------------------------------------GGTAATATTAATTTACTTAAATAAAGTTCTAAATA-AAATTATGATAATGAC-ATATTTT-ATTTATTAGTCTTGGCTAATTTGCGTGCCAGCAGTCGCGGTAATACGTATAAGACAAGTGTTATTCATCTTTAACAGGTTTAAAGGGTACCTAGACAGTAAAATAAGCC-GTAAGGT---------------------------------------------ACTAATTT-ACTAGAGTTACTTATAAGGGGGCTAATAGGTACT-AGT--GG---TGGAGAGATGAAATTCTTTGATACCT---CGCCCTGGAA-GGTGAA-CATGGCACAGATTAAGGCGTAAGCTTCTCTTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TA---------------------GCTTCATGTAACAAAAAGGATTAGATACCCTCGTAG-TTGAAGGCAGACAATGATGAGTGTCATAAGGTAC----------------------------------------------------------------------------------------------------------------------------------------------------TTTACCATATAAACGATAGTGTAAGCACTCCACCTCAAGAGTAAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Sporopodium_sp_nov_EU601748_EU601750 AATGGCCTAACGGCTGAA----------CCAGCAACTTGGAAGAATGTATAGCGAAAGCTAGTA------------------------------------------------------------------------------------------------------------------------------------------ACTAACATTAATTTACTTAAATAAAGTTCTAAATA-AAATTATGATAATGAC-ATATTCT---TTATTAGTCTTGGCCAATTTGCGTGCCAGCAGCCGCGGTAATACGTATAAGACAAGTGTTATTCATCTTTAACAGGTTTAAAGGGTACCTAGACAGTAAAATAAGCC-G---------------------------------------------------ACTAATTT-A-TAGAGTTACTTATGAGGGGGCTAATAGGTACT------AGTG-TGGAGAGATGAAATTCTTTGATACCA---------------------CATGGCACAGATTAAGGCGTAAGCTTCTCTTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTG-CGTTGAAGGACGAAGG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TCGAGTTGTAATTTGTAGAGGGCGTTTCGGG-CGAGGCACCGGTTCAAGTCCCCTGGAACGGGGCGTCGCAG-AGGGTGAGAATCCCGTACGTGACCGGAA-GCCAGACCTATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAGG-TACGTATTATCGAGTCACCCCCCCCCAAGACCCTTGGAACATTTGCTAATGGATCCGTTTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACC-TGCCCGGGGGCGATCAGCGGC----------CGTTCTCGGCCGTGCACTCGTCC-CCGATCAGGCCAGCACCGGTTCGGGTGGTCGGACAAAGGTCGCGGGAACGTAGCTCCTTTC--GGGG--AGT-GTTAT-AGCCCGCGGCGCAATGCGGCCAGCCTGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTGCTCAGCGACCCGTCTTG Trapelia_glebulosa_AF381568_AF274098 ?ATAGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGCGCAAGCTAATTGCACTGGCCTTTGGCTGG------------------------------------------------------------------------------------------------------------------------TGCAAGATCGACCATGTTGAATAAAGTTCTAGGTA-GAGTTATGATAATGAC-ATTTTCT-ATCTATGTGTCTTGACCAAGTCACGTGCCAGCAGTCGCGGTAATACGTGGAAGACTAGTGTTATTCATCTTTAATCGGTTTAAAGGGTACCTAGACGGTTAATCAAACCCCCCCTACGGGGGG---------------------------------------TATTAATTGACTAGAGTTTTATATGAGGAGGG----GAGTACTAAAG-AG----TGTAGAGATGAAATTCTGTGATACCTGC-------------------CTTGGAACAGGCAACGGCGAAGGCAACCTTTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------AAA-CTGACGTTGAAGGACGAAGGCTT-AGGACACCAACAGGATTAGATACCCCAGCAG-TCTAA-GCAGACAATGATGAATGTCATAGATTAGAA-TTATAA-------------------------------------------------------------------------------------------------------------------------------------------TTTTGTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAAT??????????????????????????????????????????????????????????????????????????????????????TAATTTGTAGAGGATGCCTCGGG-TGCGATCCCGGTCTAAGTTCCTTGGAACAGGACGTCACAG-AGGGTGAGAATCCCGTACGTGACCGGCG-GTCAACCCCATGTGAGGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCA{GT}CTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-{GT}TAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAG{CT}CAGACT-TGCTCGCGGGTGATCAACCGT----------CCTTC{GT}GGGCGGTGCACTGACCC-GCGATCAGGCCAGCATCGGTTTCGGCGGCCCGATAAAAGGGGCGGGAACGTAGCTCCCCCC--GGGG--AGT-GTTAT-AGCCCGTCCCACAATGGGGTCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGCTGTAAGCGACCCGTCTTG Umbilicaria_mammulata_DQ912305_DQ782912 ????????????????????????????CCAGCAACTTGGAAGAATGTATAGCGAAAGCTGATTGTATTAACAGGCAATGGTTAA---------------------------------------------------------------------------------------------------------------------TATAATATCGACTTAGTCGACTAAAGTTCTAGGTA-GAGTAATGATAATGAC-ATTTTTT-ACCTATGTGTCTTGACCAAGTCACGTGCCAGCAGTCGCGGTAATACGTGGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTATATTTAGCCCACAAAGGGT-------------------------------------------ACTAAATAAACTAGAGTTTAATGCGAGGGGGTATCTA-GTACTAATGG------AGTAGAGATGAAATTTATTAATACCATG-------------------GAGGCGACTGGTAACGGCGAAAGCAACCCTTTATGCAA----------------------------------------------------------------------------------------------------------------------------------------AAA-CTGACGTTGAAGTACGAAGGCTT-GTGTAACCAAAAGGATTAGATACCCTAGTAG-TGCAA-GCAGACAACGCTGAATGCCATAGATTAGA--TTATA--------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCCCC-----CGGGGTCCGAGTTGTAATTTGTAGAGGATGCTTCGGG-TGCGGCGCCGGTCTAAGTTCCTTGGAACGGGACGTCATAG-AGGGTGAGAATCCCGTATGTGACCGGTG-ACCCAGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGGCCAGACT-TGCTCGGGGGTGATCAGCCGT--------CCTTCTCCAGGCGGCGCACTCGCCC-ACGATCAGGCCAGCATCGGTTCAGGCGGCCGGATAAAGGCCCCGGGAACGTGGCTCCCTCC--GGGG--AGT-GTTAC-AGCCCGGGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTCGCAAGCGACCCGTCTTG Usnea_strigosa_DQ972981_DQ973033 ????????????????????????????CCAGCAACTTGGAGGAATGTATAGCAATAGCTAGTTGCA-TCATT-GTAAAGATGA----------------------------------------------------------------------------------------------------------------------TGCAATATTGACTATGTTGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAACACGTAGAAGACTAGTGTTATTCATGTTTAATCGGTTTAAAGGGTACCTAGACGGCAGATCAAGCT-TTCCGAGCAGAAAAAAAAGTAAAAGG--------------------------ACTAATTT-GCTAGAGTTACTTACGAGGGGGTTTTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTTTAATACCT--ATTCTCGAAA-GAATTAT-AATGGCACAGGTATAGGCGAAGGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAGGGACGAAGGCTTTATACAACGAACGGGATTAGATACCCCATTAG-TGGAA-GCAGTAAATGATGAATGTCATAGATTAG---CTAGATAG-----------G-----------------------------------------------------------------------------------------------------------------------------TTCATTCTATAAATGAAAGTGTAAGCATTCCACCTCATGAGTAATCCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCAGCAGCTCAAATTTGAAATCTGGCCCCGT-----CGGGGTCCGAGTTGTAATTTGTAGAGAGTGTTTCGGG-TGAGACCGTGGTCTAAGTCTATTGGAACATGGCGTCATAG-AGGGTGAGAATCCCGTATGTGACCGCGG-CTCGAGCCCATGTGAAGCCTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCTGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTCCGTAGGTGATCAGCCGCT--G--------TTCTCAGTGGTGCACTCGCTCTGCGATCAGGCCAGCATCGGTTTCGGCGGTCGGATAAAGGCCTTGGGAATGTAGCTCCTTTC--GGGG--AGT-CTTAT-AGCTCTCGGTGCAATGCGGCCAGCCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTG Vulpicida_juniperina_AY340535_AY340577 AATAGCCTAACGGCTGAA----------CCAGCAACTTGGAGGAATGTATAGCAATAGCTACTTGCA-TCATT-GTAAATATGA----------------------------------------------------------------------------------------------------------------------TGCAAGATCGACTATGTCGAATAAAATTCTAGGTA-GAATTATGATAATGAC-ATTGTCT-GCCTATGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATGTTTAATCGGTTTAAAGGGTACCTAGACGGTAAATCAAGCC-TAAAAGGAAATAAATGAAGGG-------------------------------ACTAATTT-ACTAGAGTTACTTATGAGGGGGTATTAAAGTACT-GCT--GG---TGTAGAGATGAAATTCTGTCATACCT--CTTTTCAATA-GAAAATT-AATGGCACAGGTATAGGCGAAAGCATCCCCTTATGTGA----------------------------------------------------------------------------------------------------------------------------------------TAA-CTGACGTTGAGGGACGAAGGCTTTGTGTAGCGAACAGGATTAGATACCCCAGTAG-TCAAA-GCAGAAAATGATGAATGTCATAGATTAG---ATATATAA-----------G-----------------------------------------------------------------------------------------------------------------------------TTTATTCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCCGT-----CGGGGTCCGAGTTGTAATTTGTAGAGAGTGCTTCGGG-TGAGACCGCGGTCTAAGTCCATTGGAACATGGCGTCATAG-AGGGTGAGAATCCCGTATGCGACTGTGG-CTCGAGCCCATGTGAAGCCTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCTGGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGTCCGTGGGTGATCAGCCGCT--G--------TTCTCAGTGGTGCACTCGCTCTGCGATCAGGCCAGCATCGGTTCTGGCGGTCGGATAAAGGCCTTGGGAATGTAGCTCCCCCC--GGGG--AGT-CTTAT-AGCCCTCGGCGCAATGCGGCCAGCTGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTG Xanthoria_polycarpa_DQ912303_DQ912351 ????????????????????????????CCAGCAACTTGCAAGAATGTATAGCAATAGCTATTTGCACTAATAATGTTTAG-------------------------------------------------------------------------------------------------------------------------TGTGAAATCGACTATGTCGAATAAAATTCTGGGTA-GAATTATGATAATGAC-ATTAGCT-ATTCATAAGTCTTGACCAAATTACGTGCCAGCAGTCGCGGCAATACGTAGAAGCCAAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACTTAGACGGTAAATAAAGCCTTTAAAGGGT-------------------------------------------ACTAGTTT-GCTAGAGTTTTATATGAAGGGGTTTTAAAGTACT-GCTG-G----TGTAGAGATGAAATTCAGTTATACCTTA-------------------CATGGCACAGGTTAAGGCGAAGGCATCTTCTTATGTAA----------------------------------------------------------------------------------------------------------------------------------------AAA-CTGACGTTGAAGGACGAAGGCTTTGTGTCTCGAACAGGATTAGATACCCTAGTAG-TCTAA-GCAGAAAATGATGAATGTCATAGATTAGATGTAA----------------------------------------------------------------------------------------------------------------------------------------------TTTGATCTATAAATGAAAGTGTAAGCATTCCACCTCAAGAGTAATCCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCCTC-----CGGGGCCCGAGTTGTAATTTGTAGAGGGTGTTTCGGG-CGAGGCGCCGGTCTAAGTCCCTTGGAACGGGGCGTCAGAG-AGGGTGAGAATCCCGTACGCGACCGGCG-GCCGAGCCTATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAA-GTAG----------------------------------------------------------------AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACC-TGCCCGCGGGTGATCAGCCGT----------CCTTCTGGGCGATGCACTCGCCC-GCGATCAGGCCAGCATCGGTTCGGGCGGTCGGATAAAGGCCTCGGGAACGTGGCTCCCCTC--GGGG--AGT-GTTAT-AGCCCCTGGTGCAATGCGGCCCGCCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTG ; END; BEGIN SETS; CHARSET nrlsu (CHARACTERS = mtSSU_nrLSU) = 988-1655; CHARSET mtssu (CHARACTERS = mtSSU_nrLSU) = 1-987; END; [ The following blocks are output data for analysis step 4287 ] BEGIN TREES; TITLE Tb9059; LINK TAXA = TaxaForAnalysisStep4287; TREE Fig._1 = [&R] (Polysporina_simplex_AY853337_AY640961,Pleopsidium_gobiense_DQ991755_DQ883698,(((((((Peltigera_aphthosa_AY340515_AF286759,Lobaria_pulmonaria_AY340504_AF183934),((Porpidia_speirea_DQ986865_DQ986758,Lecidea_silacea_DQ986878),Porpidia_albocaerulescens_DQ986871_DQ986757)),(((Physcia_aipolia_DQ912290_DQ782904,Rinodina_tephraspis_DQ912293_DQ912345),(Calicium_viride_AY143402_AY340538,Amandinea_punctata_AY143399_DQ986756)),((Speerschneidera_euploca_AY300912_AY300862,(Lepraria_coriensis_EU601743_EU601753,(Lepraria_coriensis_EU601745_EU601754,Lepraria_coriensis_EU601746,Lepraria_coriensis_EU601744))),Halecania_alpivaga_AY756368)),(((((((Canoparmelia_caroliniana_AY584613_AY584634,Usnea_strigosa_DQ972981_DQ973033),Parmelia_saxatilis_AY340514_AY300849),Vulpicida_juniperina_AY340535_AY340577),(Protoparmelia_badia_EF105420_EF105425,Gypsoplaca_macrophylla_DQ899299_DQ899298)),Mycoblastus_sanguinarius_DQ912276_DQ912333),((((Lecanora_hybocarpa_DQ912273_DQ782910,Lecanora_paramerae_EF105418_EF105422),(((Lecanora_sulphurea_EF105419_EF105423,Pyrrhospora_quernea_AY300908_AY300858),Lecanora_intumescens_AY567715_AY300841),Adelolecia_pilati_AY300874_AY300826)),((Lecanora_achariana_DQ972976_DQ973027,Lecanora_contractula_DQ986898_DQ986746),Lecanora_polytropa_DQ986807_DQ986792,Rhizoplaca_melanophthalma_DQ787352_DQ787351)),(Cladonia_caroliniana_AY584614_AY584640,(Lepraria_incana_DQ986812_DQ986795,Lepraria_lobificans_DQ986887_DQ986768)))),((((Bacidia_schweinitzii_DQ972998_DQ782911,Bacidia_rosella_AY300877_AY300829),(Ramalina_complanata_DQ972986_DQ973038,Niebla_cephalota_DQ986893_DQ986762),(Crocynia_gossypina_AY567766,Crocynia_pyxinoides_AY584615_AY584653)),(Sphaerophorus_globosus_DQ986866_DQ986767,Neophyllis_melacarpa_AY340511_AY340556)),((((((Lepraria_usnica_AY300894_AY300843,Lepraria_usnica_EU601747),((Fellhanera_bouteillei_AY567787,Fellhanera_subtilis_AY567786),Fellhanera_sp_EU601741)),(Sporopodium_sp_nov_EU601748_EU601750,Sporopodium_antoninianum_AY567785)),Bacidia_trachona_AY567784),(((Calopadia_lecanorella_EU601738_EU601751,Calopadia_subcoerulescens_EU601740),(Calopadia_sp_EU601739_EU601752,Calopadia_foliicola_AY567782)),Lasioloma_arachnoideum_AY567783),(Bapalmuia_palmularis_AY567781,Fellhanera_paradoxa_EU601742),Byssolecania_variabilis_AY567780,((Byssoloma_subdiscordans_AY567779,Byssoloma_leucoblepharum_AY567778),Byssoloma_marginatum_AY567777,Byssoloma_meadii_AY567776),Fellhanera_viridisorediata_AY567775,Byssoloma_sp_EU601737),Pilocarpaceae_genus_et_sp_nov_EU601736_EU601749))),((Xanthoria_polycarpa_DQ912303_DQ912351,Megalospora_tuberculosa_AY584623_AY584650),Letrouitia_domingensis_AY584619_AY584648)),(Catolechia_wahlenbergii_DQ986811_DQ986794,Rhizocarpon_geographicum_AF483187_AY853389)),(Pertusaria_amara_AY300900_AF274101,Trapelia_glebulosa_AF381568_AF274098)),(Lasallia_papulosa_DQ986891_DQ883691,Umbilicaria_mammulata_DQ912305_DQ782912)),Candelaria_concolor_DQ986806_DQ986791)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1054] END;