#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 21, 2025; 4:47 GMT TreeBASE (cc) 1994-2008 Study reference: Tanaka E. 2008. Molecular phylogenetic analysis of ergot fungi to presume the parasitic characteristics. Proceedings of the association for plant protection of hokuriku, 57. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2084] [ The following blocks are input data for analysis step 4333 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4333; DIMENSIONS NTAX=45; TAXLABELS Claviceps_africana_AJ011783 Claviceps_africana_AJ011784 Claviceps_citrina_AJ133393 Claviceps_cynodontis_DQ187312 Claviceps_cyperi_AY387491 Claviceps_cyperi_AY387492 Claviceps_digitariae_AJ605999 Claviceps_fusiformis_AJ1333392 Claviceps_fusiformis_AJ626727 Claviceps_gigantea_AJ133394 Claviceps_maximensis_AJ133396 Claviceps_nigricans_AM039814 Claviceps_panicoidearum_AB255604 Claviceps_panicoidearum_AB255605 Claviceps_panicoidearum_AB371643G Claviceps_panicoidearum_AB371643I Claviceps_paspali_AB250409 Claviceps_purpurea_AB099508 Claviceps_purpurea_AB160991 Claviceps_purpurea_AB160992 Claviceps_purpurea_AB160993 Claviceps_purpurea_AB162147 Claviceps_purpurea_AB371641Hi Claviceps_purpurea_AB371641Ko Claviceps_purpurea_AB371641Su Claviceps_purpurea_AB371642 Claviceps_purpurea_AB371644 Claviceps_purpurea_AJ000069 Claviceps_purpurea_AJ000070 Claviceps_purpurea_AJ133400 Claviceps_purpurea_AJ133401 Claviceps_purpurea_AJ309368 Claviceps_purpurea_AJ311950 Claviceps_purpurea_AJ311951 Claviceps_purpurea_AY387490 Claviceps_purpurea_DQ119114 Claviceps_purpurea_U57669USA Claviceps_pusilla_AJ277544 Claviceps_sorghi_AJ306621 Claviceps_sorghicola_AB250410 Claviceps_sorghicola_AJ01159 Claviceps_sulcata_AJ133402 Claviceps_viridis_AH133404 Claviceps_zizaniaeAJ133405 Epichloe_amarillans_L07041 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3257] TITLE Claviceps_ITS; LINK TAXA = TaxaForAnalysisStep4333; DIMENSIONS NCHAR=675; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Claviceps_africana_AJ011783 ATTACCGAGTT--TACAACTCCCAAACCCCCATGTGAACCTCTACCG-AAA-CGTTGCCTCGGCGGGA-------TGCGTCCCGGCCC--------GCCCCTCTG---------------------GGGTGCCGGAACCAA--------------------------------------------------------GGCGGCCCGCCGGGGGACCCCAACCAGAA-CTCT--GTAACACC---TCCGGGAAC-GTCTGAGTGGATTTA------CCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-CCCCA--GGGCCTGGTGTTGGGGACC-GGCTCCCGG---GGGACGGCCCGCCACGCGCGGGCGCGCCCCCCTGCCGCCCCC-CAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAGCATGACCACCTCGCAGGCGG-CGGACCGGCGCGGCCACGGCCGTAAAA---------------CGCCCAACTC----AAGAGTTGACCTC- Claviceps_africana_AJ011784 ATTACCGAGTT--TACAACTCCCAAACCCCCATGTGAACCTCTACCG-AAA-CGTTGCCTCGGCGGGA-------TGCGTCCCGGCCC--------GCCCCTCTG---------------------GGGTGCCGGAACCAA--------------------------------------------------------GGCGGCCCGCCGGGGGACCCCAACCAGAA-CTCT--GTAACACC---TCCGGGAAC-GTCTGAGTGGATTTA------CCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-CCCCA--GGGCCTGGTGTTGGGGACC-GGCTCCCGG---GGGACGGCCCGCCACGCGCGGGCGCGCCCCCCTGCCGCCCCC-CAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAGCATGACCACCTCGCAGGCGG-CGGACCGGCGCGGCCACGGCCGTAAAA---------------CGCCCAACTC----AAGAGTTGACCTC- Claviceps_citrina_AJ133393 ATTAACGAGTT--TACA-CTCCCAAACCCAC-TGTGAACCTGTACCT-TTA--GTTGCCTCGGCGTG----------CGTCTAGGCGC-------------------------------------------------------------------------------------------------------------------CCGCCGGGGGACCCAAA----CTCTTCTGTATCTTCCCC-CTAGGGGCAT-GTCTGAGTGGATTTTAAA---TCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-GCCAGC--CGCCTGGTGTTGGGGGAC-GGCACCCGC-----------------------------------TGCCGCCCCT-GAAATAGATCGGCGGCCCCGCCGCGGCCTTCCCTTGCGCAGTAACAT-ACCACCTCGCAAACAG-GAGCCCGGCGCGGCCACTGCCGTAAAAATGACTGCGGTAAAACGCACGACTC-CTCCAGAGTTGACCTC- Claviceps_cynodontis_DQ187312 ATTACCGAGTTCTTACA-CTCCCAAACCCAC-TGTGAACCTTACCCG-AA--CGTTGCCTCGGCGGGA-------CCCGTCCCG--------------------------------------------------------------------------------------------------------------------------CCGGGGGAC-----CCAA--ACTCC-TGTATCTCT---TTGCGGCAT-GTCTGAGTGGATTTT------ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCCC---GTGCTTGGTGTTGGGGACC-GGCTCCCGG----GGG---CCCGCCTCGCGCGGGCG--AG-CCCTGCCGCCCCC-CAAATGGATCGGCGGCCGCGACGCGGCCTCCCCCTGCGCAGTAACAT-ACCACCTCGCAGGCGG-GAGCGCGACGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-CTCAAGAGTTGACCTC- Claviceps_cyperi_AY387491 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGGTTGTA-CCCTCGACCAACTCC{AC}TGACCCATAACCCCTCCCCAGGGGACGTTCTCAAGAGCTGAGGGCGGGGCCCCCTACTTCCAAGCACTACCC--TCTTAAGGGGACGTCATAAGGAAAAAACGGAGGCGCCCCCCCGCCATAGGACCCAAA---ACTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTCAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-GCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GGGTGCGGGTTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TTTTAGAGTTGACCTC- Claviceps_cyperi_AY387492 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGGTTGTA-CCCTCGACCAACTCCATGAGACATAACCCCTCCCCAGGGGACGTTCTCAAGAGCTGAGGGCGGGGCCCCCTACTTCCAAGCACTACCC--TCTTAAGGGGACGTCATAAGGAAAAAACGGAGGCGCCCCCCCGCCATAGGACCCAAA---ACTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTCAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-GCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GGGTGCGGGTTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAA----------------CGCCCAACTT-TTTTAGAGTTGACCTC- Claviceps_digitariae_AJ605999 ATTACCGAGTT--TACCACTCCCAAACCCCC-TGTGAACCTATACCC-GAACCTTCGCCTCCATAGGGATGTGACCCGGCCCGCCCCTAGAGGGTGCCGGAAACCATGTCGCGCCCTGCTGGGGGAGCCCCGAAGTTCGACCTCTTCCCTTGGCGGGATGCGTCCCGGCCAGCCCCTAGAGGGTGCCGGTAACCCATGTCGGCCCGCCGAGGAACCCAAA-------CTCT--GTATTCTG---TCGCGGCAT-GTCTGAGTGGATTTACCAA--TCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGAGC-CCCCCG-CGGCTCGGTGTTGGGGACCCGGCTCCCGGGGGCCCGCCACACGCCGCGGGCGCCCC-----CCCGGTCGCCCCCTAAAATGGATCGGCGGCCACGCCGCGGCGACCCCCTGCGCAGTAACAT-ACCACCTCGCAGACGGTAGCCGCGGCGCGGCCACTGCCGTAAAAA--------------CGCCCAACTTCTCAAAGAGTTGACCCTC Claviceps_fusiformis_AJ1333392 ATTACCGAGTT--TTCAACTCCCAAACCCAC-TGTGAACCTATACCA-AAAACGTTGCCTCGGCGGGACATG---CGCCCCGGACCGC--------CCCCCCCCC---------------TCGCGGGGGAG--GGCGCCGGATCCC-------------------------------------------------ACGGCCGCCCGCCGGGGGCCCCAAA-------CTCT--GTATTCCC--ATAGCGGCAT-GTCTGAGTGGATTT---A---TCCAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-CCCCGG---GCCTGGTGTTGGGGACC-GGCTCACGG-----GGGGGGGCACAGCGCCCTCCCC-----CCCTGCCGCCCCC-TAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAACAT-ACCACCTCGCAGGCGGCTGGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-CTCCAGAGTTGACCTC- Claviceps_fusiformis_AJ626727 ATTACCGAGTT--TTCAACTCCCAAACCCAC-TGTGAACCTATACCA-AAAACGTTGCCTCGGCGGGACATG---CGCCCCGGACCGC--------CCCCCCCC----------------TCGCGGGGGAG--GGCGCCGGATCCC-------------------------------------------------ACGGCCGCCCGCCGGGGGCCCCAAA-------CTCT--GTATTCCC--ATATCGGCAT-GTCTGAGTGGATTT---A---TCCAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATAGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-CCCCGG---GCCTGGTGTTGGGGACC-GGCTCACGG-----GGGGGGGCACAGCGCCCTCCCC-----CCCTGCCGCCCCC-TAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAACAT-ACCACCTCGCAGGCGGCTGGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-CTCCAGAGTTGACCTC- Claviceps_gigantea_AJ133394 ATTACCGAGTT--TACA-CTCCCAAACCCCA-TGTGAACCTCTACCG-AA--CGTTGCCTCGGCGGGACG-----CG-TCCCGGCCCC--------GCCCCTTCTA----------------CGGGGTGCCGGAGCCGAGG--------------------------------------------------------CCCG-CCCGCCGGGGGACCCCAACCATAAACTCT--GCATAT----ATCATGGCAT-GTCTGAGTGGATTTAGTA---TCAAATGAATCAAAACTTCCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCCC---GGGTTTGGTGTTGGCGACC-GGCACACGGTT-GGGAGGGGCCACGTGCCCCCCCC---ACTCCGCGCCGTCGCC-CAAATGGATCGGCGGCCACGCCGCGGCATCCCC-TGCGCAGTAACAT-ACCACCTCGCAGGCGG-CGGCCCGGCCCGGTCTCTGCCGTAAAA---------------CCCCCAACTTTCTCAAGAGTTGACCTC- Claviceps_maximensis_AJ133396 ATTACCGAGTTCTTACA-CTCCCAAACCCAC-TGTGAACCTTACCCG-AA--CGTTGCCTCGGCGGGA-------CCCGTCCCG--------------------------------------------------------------------------------------------------------------------------CCGGGGGAC-----CCAA--ACTCC-TGTATCTCT---T-GCGGCAT-GTCTGAGTGGATTTT------ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCCC---GTGCTTGGTGTTGGGGACC-GGCTCCCGG----GGG---CCCGCCTCGCGCGGGCG-----CCCTGCCGCCCCC-CAAATGGATCGGCGGCCACGACGCGGCCTCCCCCTGCGCAGTAACAT-ACCACCTCGCAGGCGG-GAGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-CTCAAGAGTTGACCTC- Claviceps_nigricans_AM039814 ATTACCGAGTG--TACCACTCCCAAACCCAT-TGTGAACTTATACCC-AACACGTTGCCTCGGCGGTTTGCAACCCTCGTCGACCTCCAGCGGACAAAACCCCTCTCCAGGGGACGTCCCAAGGAGCTGAGGGAGGGGGACCCTTACATCCAGCACGACCCC-TCTGAAGGGGACGTCATAAGGAAAAAAGGCCGACCCCCACCCGCCAGAGGACCAGAAGAAACTCTTTG--GTATACCC---TAGCGGCAT-GTCTGAGTGGATTGTACA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GGGTGCGGGTTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACGGCCGTAAAA---------------CGCCCAACTT-TTGTAGAGTTGACCTC- Claviceps_panicoidearum_AB255604 ATTACCGAGTT--TACA-CTCCCAAACCCCC-TGTGAACCTCTACCG-AA--CGTTGCCTCGGCGGG---------G-GCGCGGACGC--------GCGCCGTCC--------------------------------------------------------------------------------------------CGCC-CCCGCCGGGGGACCCGAACCAAAAACTCT-TGTATCCTCCCATCGTGGCAT-GTCTGAGTGGATTTA------TCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-CCCCAG-GGGCCTGGTGTTGGGGACC-GGCTCCCCG-----GGCGCCCGGTCTGACCCGGGC---CCGCCCTGCCGCCCCC-CAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAACAT-ACCACCTCGCAGGCGG-CGGCTCGGCGCGGCCACGGCCGTAAAA---------------CGCCCAACTT-CTCCAGAGTTGACCTC- Claviceps_panicoidearum_AB255605 ATTACCGAGTT--TACA-CTCCCAAACCCCC-TGTGAACCTCTACCG-AA--CGTTGCCTCGGCGGG---------G-GCGCGGACGC--------GCGCCGTCC--------------------------------------------------------------------------------------------CGCC-CCCGCCGGGGGACCCAAACCAAAAACTCT-TGTATCCTCCCATCGTGGCAT-GTCTGAGTGGATTTA------TCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-CCCCAG-GGGCCTGGTGTTGGGGACC-GGCTCCCCG-----GGCGCCCGGTCTGACCCGGGC---CCGCCCTGCCGCCCCC-CAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAACAT-ACCACCTCGCAGGCGG-CGGCTCGGCGCGGCCACGGCCGTAAAA---------------CGCCCAACTT-CTCCAGAGTTGACCTC- Claviceps_panicoidearum_AB371643G ATTACCGAGTT--TACA-CTCCCAAACCCCC-TGTGAACCTCTACCG-AA--CGTTGCCTCGGCGGG---------G-GCGCGGACGC--------GCGCCGTCC--------------------------------------------------------------------------------------------CGCC-CCCGCCGGGGGACCCAAACCAAAAACTCT-TGTATCCTCCCATCGTGGCAT-GTCTGAGTGGATTTA------TCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-CCCCAG-GGGCCTGGTGTTGGGGACC-GGCTCCCCG-----GGCGCCCGGTCTGACCCGGGC---CCGCCCTGCCGCCCCC-CAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAACAT-ACCACCTCGCAGGCGG-CGGCTCGGCGCGGCCACGGCCGTAAAA---------------CGCCCAACTT-CTCCAGAGTTGACCTC- Claviceps_panicoidearum_AB371643I ATTACCGAGTT--TACA-CTCCCAAACCCCC-TGTGAACCTCTACCG-AA--CGTTGCCTCGGCGGG---------G-GCGCGGACGC--------GCGCCGTCC--------------------------------------------------------------------------------------------CGCC-CCCGCCGGGGGACCCAAACCAAAAACTCT-TGTATCCTCCCATCGTGGCAT-GTCTGAGTGGATTTA------TCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-CCCCAG-GGGCCTGGTGTTGGGGACC-GGCTCCCCG-----GGCGCCCGGTCTGACCCGGGC---CCGCCCTGCCGCCCCC-CAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAACAT-ACCACCTCGCAGGCGG-CGGCTCGGCGCGGCCACGGCCGTAAAA---------------CGCCCAACTT-CTCCAGAGTTGACCTCC Claviceps_paspali_AB250409 ATTACCGAGTT--TACAACTCCCAAACCCGC-TGTGAACATATACCCCAAAACGTTGCCTCGGCGGT--------CGCTCCGGCGGCC---------------------------------------------------------------------------------------------------------------------GCCGGGGGTCCCGAACCCTCTGTTTT---CCCGCCGCGCCAGCGGCACCGTCTGAGTGGATCATTAGTA-TCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCGCCCCCGCGCGCCTGGTGTTGGGGGAC-GGCCGGGCG----GGGGGGCTCACCCTCCCC-CGCGA------GCGCCGCCCCT-GAAATGAATCGGCGGCCACGTTGCAGCCCCCTT-TGCGCAGTAGCAC--CTACCTCGCAACCGGGCGGCGCGGCGCGGCCACCGCCGTAAAA---------------ACCCCGACTC-CTCCAGAGTTGACCTC- Claviceps_purpurea_AB099508 ATTACCGAGTT--TACAACTCCCAAACCCAT-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGA--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAAAGGCG---------------------------------------------------------CCCCGTCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGACTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AB160991 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCCC-----------------GCAAGGGAGGCAGAGGCG---------------------------------------------------------CCC-GCCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-TCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGTC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AB160992 ATTACCGAGTT--TACAACTCCCAAACCCAT-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGA--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAAAGGCG---------------------------------------------------------CCCCGTCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGACTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AB160993 ATTACCGAGTT--TACAACTCCCAAACCCAT-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGA--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAAAGGCG---------------------------------------------------------CCCCGTCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGACTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AB162147 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCCC-----------------GCAAGGGAGGCAGAGGCG---------------------------------------------------------CCC-GCCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-TCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGTC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AB371641Hi ATTACCGAGTT--TACAACTCCCAAACCCAT-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGA--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAAAGGCG---------------------------------------------------------CCCCGTCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGACTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AB371641Ko ATTACCGAGTT--TACAACTCCCAAACCCAT-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGA--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAAAGGCG---------------------------------------------------------CCCCGTCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGACTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AB371641Su ATTACCGAGTT--TACAACTCCCAAACCCAT-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGA--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAAAGGCG---------------------------------------------------------CCCCGTCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGACTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AB371642 ATTACCGAGTT--TACAACTCCCAAACCCAT-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAAAGGCG---------------------------------------------------------CCCCGTCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGACTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AB371644 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCCC-----------------GCAAGGGAGGCAGAGGCG---------------------------------------------------------CCC-GCCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTACAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGTC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AJ000069 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAGAGGCG---------------------------------------------------------CCC-GCCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGTC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AJ000070 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAGAGGCG---------------------------------------------------------CCC-GCCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AJ133400 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAGAGGCG---------------------------------------------------------CCC-GCCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AJ133401 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAGAGGCG---------------------------------------------------------CCC-GCCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGTC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AJ309368 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCCC-----------------GCAAGGGAGGCAGAGGCG---------------------------------------------------------CCC-GCCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC--GCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AJ311950 ATTACCGAGTT--TACAACTCCCAAACCCAT-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGA--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAAAGGCG---------------------------------------------------------CCCCGTCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGACTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AJ311951 ATTACCGAGTT--TACAACTCCCAAACCCAT-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAAAGGCG---------------------------------------------------------CCCCGTCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTACAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GGGTGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_AY387490 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCCC-----------------GCGAGGGAGGCAGAGGCG---------------------------------------------------------CCC-GCCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTACAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGTC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_DQ119114 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGG--------CACAGCGGTACCC--------GAGCCCCCC-----------------GCAAGGGAGGCAGAGGCG---------------------------------------------------------CCC-GCCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTACAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGACTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_purpurea_U57669USA ATTACCGAGTT--TACAACTCCCAAACCCAT-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGA--------CACAGCGGTACCC--------GAGCCCCC------------------GCAAGGGAG-CAAAGGCG---------------------------------------------------------CCCCGTCCGCCAGGGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTAAAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGACTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCAGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCAGCCTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Claviceps_pusilla_AJ277544 ATTACCGAGTT--TACA-CTCCCAAACCCAC-TGTGAACCTTACCAC-AA--CGTTGCCTCGGCGGGA-------TGCGTCCCGGCCC--------GCCCATCGC--------------------AGGGTGCCGGACACAA--------------------------------------------------------GGCGGCCCGCCGGGGGAC-----CCGAAACTCAC-TGTATCTCT---TTTTGGCAT-GTCTGAGTGGATTAC------ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CC------TGCTTGGTGTTGGGGACC-GGCTCCCGG----GGG---CCCGCCTCGCGCGGGCG--C--CC-TGCCGCCCCC-TAAATCGATCGGCGGCCACGACGCGGCCCCCCC-TGCGCAGTAACAT-ACCACCTCGCAGGCGG-GAGCCCGCCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-CTCAAGAGTTGACCTC- Claviceps_sorghi_AJ306621 ATTACCGAGTT--TACA-CTCCCAAACCCCCATGTGAACCTCTACCG-AA--CGTTGCCTCGGCGGGAAA-----CGCGCCCCGGCCC--------GCACCCCCCC----------------CAGGGGCGCCGGGAACCAG--------------------------------------------------------GGCCGCCCGCCGGGGGA----AACCAGAAACCCTCTGTATC------TCCAGGAAC-GTCTGAGTGGATTTAGTA---TCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCCCC--GGGCTTGGTGCTGGGGACC-GGCTCCCGG-----GGGGGGAAACC---------C---CCCCCCTGCCGCCCCC-CAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAACAC-TAC-TCTCGCAGGCGGGCGGCCCGGCGCGGCCACTGCCGCAAAA---------------CGCCCAACTC-CTCACGAGTTGACCTC- Claviceps_sorghicola_AB250410 ATTACCGAGTT--TACA-CTCCCAAACCCCC-TGTGAACCTCTACCG-AA--CGTTGCCTCGGCGGG---------G-GCGCGGACGC--------GCGCCGTCC--------------------------------------------------------------------------------------------CGCC-CCCGCCGGGGGACCCAAACCAAAAACTCT-TGTATCCTCCCATCGTGGCAT-GTCTGAGTGGATTTA------TCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-CCCCAG-GGGCCTGGTGTTGGGGACC-GGCTCCCCG-----GGCGCCCGGTCTGACCCGGGC---C-GCCCTGCCGCCCCC-CAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAACAT-ACCACCTCGCAGGCGG-CGGCTCGGCGCGGCCACGGCCGTAAAA---------------CGCCCAACTT-CTCCAGAGTTGACCTC- Claviceps_sorghicola_AJ01159 ATTACCGAGTT--TACA-CTCCCAAACCCCC-TGTGAACCTCTACCG-AA--CGTTGCCTCGGCGGG---------G-GCGCGGACGC--------GCGCCGTCC--------------------------------------------------------------------------------------------CGCC-CCCGCCGGGGGACCCAAACCAAAAACTCT-TGTATCCTCCCATCGTGGCAT-GTCTGAGTGGATTTA------TCAAATGAATCAAAACTTTCAACAACGGATCTCTAGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-CCCCAG-GGGCCTGGTGTTGGGGACC-GGCTCCCCG-----GGCGCCCGGTCTGACCCGGGC---C-GCCCTGCCGCCCCC-CAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAACAT-ACCACCTCGCAGGCGG-CGGCTCGGCGCGGCCACGGCCGTAAAA---------------CGCCCAACTT-CTCCAGAGTTGACCTC- Claviceps_sulcata_AJ133402 ATTACCGAGTT--TACA-CTCCCAAACCCAC-TGTGAACCTTACCAC-AA--CGTTGCCTCGGCGGGA-------CCCGTCCCG--------------------------------------------------------------------------------------------------------------------------CCGGGGGAC-----CGAACAACTCC-TGTATCTCT---TCGCGGCTT-GTCTGAGTGGATTTTTTTCTTACGAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGC-GCCCTCGGCGCCTGGTGTTGGGGACC-GGCTCCCGG----GGGGGGCCAGCATTGCGGGGGCG--CCCCCCTGCCGCCCCC-CAAATAGATCGGCGGCCACGACGCGGCCTCCCCCTGCGCAGTAACGT-ACCACCTCGCAGGCGG-GAGCGCGGCGCGGCCACCGCCGTAAAA---------------CGCCCAACTT-CTCAAGAGTTGACCTC- Claviceps_viridis_AH133404 ATTACCGAGTT--TACA-CTCCCAAACCCCC-TGTGAACCTCTACCG-AA--CGTTGCCTCGGCGGGA-------TGCGTCCCGGCCC--------GCCCCTCGC--------------------GGGGCGCCGGAGCCAT--------------------------------------------------------GGCCGCCCGCCGGGGGAC-----CCAAA---CCC-TGTATCTCT---CGC-GGCAT-GTCTGAGTGGATTTA------TCAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CC------GGCTTGGTGTTGGGGACC-GGCTCCCGG----GGGG--CCCGCCACGCGCGGGCG--C--CCCTGCCGCCCCC-TAAATGGATCGGCGGCCACGCCGCGGCCTCCCC-TGCGCAGTAACGT---TACCACGCAGGCGG-CGGCTCGGCGCGGCCACTGCCGTAAAA---------------CGCACAACCT-CTCAAGAGTTGACCTC- Claviceps_zizaniaeAJ133405 ATTACCGAGTT--TACAACTCCCAAACCCAC-TGTGAACTTATACCC-AAAACGTTGCCTCGGCGGGTTGTA-CCCTCGTCGACCTCCATGAGCACGGACCCCCCTCCCACGGGGCAGACGTGCTAAGGAGCTGAGGGCGGGAGCCTTACGTCCAGAAGACATCTCCTCTTAAGGGGAAGTCATAAGGAGAAAAGGCCCCCCCCCGCCAGAGGACCAAAA----CTCTTCT--GTATACCC--ATAGCGGCAT-GTCTGAGTGGATTTACAA---ACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCT------GCTTGGTGTTGGGGACC-GGCTCCGCG-----GG-TGCGGGCTTCGGCC-CGCC-----CCGTGCCGCCCCC-GAAATGGATCGGCGGTCTCGTCGCA--CTTCTT-TGCGTAGTAACAT-ACCACCTCGCAACAGG--AGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTT-TT-TAGAGTTGACCTC- Epichloe_amarillans_L07041 ATTACCGAGTT--TACA-CTCCCAAAACCCC-TGTGCACCTATACCT-CTACTGCTGCCTCGGCGGG--------CACGGCCGCGGAC----------GCCCCCTC----------------GCGGGGGCGCCGGGGCTA----------------------------------------------------------GGCGCCCGCCGGGGGACCCAAA----CCCTTCT--GTATTTTC---TTACG-CAT-GTCTGAGTGGATTGAATA---TCGAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CCGCTGCGCG-TTGGTGTTGGGGACC-GGCTCGCCC-------------GCCTCGCGGCGGCG---------GCCGCCCCT-GAAATGAATCGGCGGTCTCGTCGCAGCCTCCTT-TGCGTAGTAACAC-ACCACCTCGCAACCGG-GAGCGCGGCGCGGCCACTGCCGTAAAA---------------CGCCCAACTTCTCCAAGAGTTGACCTC- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Claviceps_ITS) = N: 1-675; CODONPOSSET CodonPositions (CHARACTERS = Claviceps_ITS) = N: 1-675; END; [ The following blocks are output data for analysis step 4333 ] BEGIN TREES; TITLE Tb9105; LINK TAXA = TaxaForAnalysisStep4333; TREE Fig._3 = [&R] (Epichloe_amarillans_L07041,(((Claviceps_purpurea_AY387490,Claviceps_purpurea_AB371644,Claviceps_purpurea_DQ119114,(Claviceps_purpurea_AB160991,Claviceps_purpurea_AB162147),Claviceps_purpurea_AJ309368,Claviceps_purpurea_AJ133400,Claviceps_purpurea_AJ000070,Claviceps_purpurea_AJ133401,Claviceps_purpurea_AJ000069,((Claviceps_purpurea_AB160993,Claviceps_purpurea_AB160992,Claviceps_purpurea_U57669USA,Claviceps_purpurea_AB099508,Claviceps_purpurea_AB371641Su,Claviceps_purpurea_AB371641Ko,Claviceps_purpurea_AB371641Hi,Claviceps_purpurea_AJ311950),Claviceps_purpurea_AB371642,Claviceps_purpurea_AJ311951)),(Claviceps_zizaniaeAJ133405,((Claviceps_cyperi_AY387491,Claviceps_cyperi_AY387492),Claviceps_nigricans_AM039814))),((((Claviceps_fusiformis_AJ1333392,Claviceps_fusiformis_AJ626727),Claviceps_digitariae_AJ605999),((Claviceps_panicoidearum_AB255605,Claviceps_panicoidearum_AB371643I,Claviceps_panicoidearum_AB371643G,Claviceps_panicoidearum_AB255604,Claviceps_sorghicola_AB250410,Claviceps_sorghicola_AJ01159),(Claviceps_gigantea_AJ133394,((Claviceps_sorghi_AJ306621,(Claviceps_africana_AJ011783,Claviceps_africana_AJ011784)),((Claviceps_pusilla_AJ277544,(Claviceps_maximensis_AJ133396,Claviceps_cynodontis_DQ187312,Claviceps_sulcata_AJ133402)),Claviceps_viridis_AH133404))))),(Claviceps_citrina_AJ133393,Claviceps_paspali_AB250409)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3043] END;