#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on November 09, 2026; 2:50 GMT

TreeBASE (cc) 1994-2008

Study reference:
Lutzoni F. 1997. Phylogeny of lichen- and non-lichen-forming omphalinoid mushrooms
and the utility of testing for combinability among multiple data sets. Systematic
Biology, 46(3): 373-406.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S383]

[ The following blocks are input data for analysis step 439 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep439;
        DIMENSIONS NTAX=31;
        TAXLABELS
            Arrhenia_auriscalpium
            Arrhenia_lobata
            Chrysomphalina_chrysophylla
            Clitocybe_lateritia
            Gerronema_marchantiae
            Gerronema_strombodes
            Gerronema_subclavatum
            Hygrocybe_citrinopallida
            Lentinus_lepideus
            Multiclavula_corynoides
            Multiclavula_vernalis
            Omphalina_brevibasidiata
            Omphalina_epichysium
            Omphalina_ericetorum
            Omphalina_grisella
            Omphalina_grossula
            Omphalina_hudsoniana
            Omphalina_luteovitellina
            Omphalina_obscurata
            Omphalina_philonotis
            Omphalina_pyxidata
            Omphalina_rivulicola
            Omphalina_rosella
            Omphalina_sphagnicola
            Omphalina_velutina
            Omphalina_velutipes
            Omphalina_viridis
            Omphalina_wynniae
            Phaeotellus_griseopallidus
            Rickenella_mellea
            Rickenella_pseudogrisella
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2678]

	TITLE ITS1;
	LINK TAXA = TaxaForAnalysisStep439;
	DIMENSIONS NCHAR=40;
	FORMAT DATATYPE=Standard SYMBOLS= "a c g t @" MISSING=? GAP= -;

MATRIX
[                                       10        20        30        40]
[                                        .         .         .         .]
Arrhenia_auriscalpium           gctgtgtgcaccttattgtagg@ct@gc@ctatgt@tttt
Arrhenia_lobata                 gctgtgtgcacc@tattgtagg@cc@g@tctatg@@tttt
Chrysomphalina_chrysophylla     gctgtgtgcacatt@ctgtag@accgg@tctatg?@tttt
Clitocybe_lateritia             gctgtgtgcac@ttattgtag@acttg@tctatgt@tttt
Gerronema_marchantiae           @@@@tgt@ca@a@c@c@@@@@@@@@@g@tctca@@c@@@@
Gerronema_strombodes            gctgtgtgcacc@tattgtagg@ct@g@cctatgtct@@@
Gerronema_subclavatum           gctgtgtgcacc@tattgtagg@ct@gc@ctatgtct@@@
Hygrocybe_citrinopallida        gctgtgtgcac@tt@ttgtaggcc@@g@tctatgtttttt
Lentinus_lepideus               ????????????????????????????????????????
Multiclavula_corynoides         gc@@tgtgcacac@tttgtcg@a@@ggc@aaacg@ctctt
Multiclavula_vernalis           gc@@tgtgcacatttttgtcg@a@@g@@@@@@@@@ctctt
Omphalina_brevibasidiata        gctgtgtgcac@tta@tg@agga@@g@ct@t@@g@ctttt
Omphalina_epichysium            gctgtgtgcac@ttattgtagg@ct@g@tctatgtatttt
Omphalina_ericetorum            gctgtgtgcacact@ctgtagg@ctggct@tacgtctttt
Omphalina_grisella              gctgtgtgcac@tttgtgtagg@cc@g@tctatgtatttt
Omphalina_grossula              gctgtgtgcacctct@@gtagg@ctggctctacg@cttt@
Omphalina_hudsoniana            g?tgtgtgcac@tcaatgt?gaaccgg@tctatgtatttt
Omphalina_luteovitellina        gctgtg?gaaccctattgtaggcct@gc@ctatgtctttt
Omphalina_obscurata             gctg@gtgcac@ttttcgtagg@cc@g@tctatgtatttt
Omphalina_philonotis            gctgtgtgcac@ttattgtag@act@g@tctatgtatttt
Omphalina_pyxidata              gctgtgtgcac@tcattgtag@acttg@tctatgt@ttt@
Omphalina_rivulicola            gctgtgtgcac@tcattgtag@acttg@tctatgt@ttt@
Omphalina_rosella               gctgtgtgcacatt@@tg@ag@ac@@gct@tca@tctatt
Omphalina_sphagnicola           gctgtgtgcac@ttattgtagg@ct@g@tctatgtatttt
Omphalina_velutina              gctgagtgcacctctg@gtagg@tcg@@tctacg@atcg@
Omphalina_velutipes             gctgtgtgcacc@cactgtagg@ct@g@tctatg@@tttt
Omphalina_viridis               gctg@gtgcacctttttgtagg@tc@?c@ctatgta@@@@
Omphalina_wynniae               gctgtgtgcac@tttgtgtagg@cc@g?@ctatgtatttt
Phaeotellus_griseopallidus      gctgtgtgcac@ttactgtagg@cc@gc@ctatgtatttt
Rickenella_mellea               gctgtgtgcacctt@@tg@agg@c@gg@tttca@@cttt@
Rickenella_pseudogrisella       gctgtgtgcaccct@@tgaag@@c@@gct@tc@g@ctttt
;
END;

BEGIN SETS;
	CHARSET ITS1 (CHARACTERS = ITS1) =  1-40;
END;
[ The following blocks are output data for analysis step 439 ]
BEGIN TREES;
      TITLE Tb5219;
      LINK TAXA = TaxaForAnalysisStep439;
      TREE Fig._2a = [&R] (Multiclavula_vernalis,(Multiclavula_corynoides,((Omphalina_rosella,Omphalina_brevibasidiata,Rickenella_mellea,Rickenella_pseudogrisella),((Gerronema_marchantiae,(Omphalina_grisella,Omphalina_velutina)),((Hygrocybe_citrinopallida,((Omphalina_luteovitellina,Omphalina_hudsoniana),(Chrysomphalina_chrysophylla,(Omphalina_wynniae,Omphalina_grossula)))),(((Gerronema_strombodes,Gerronema_subclavatum),(Clitocybe_lateritia,(Omphalina_rivulicola,Omphalina_pyxidata))),(Omphalina_ericetorum,((Omphalina_velutipes,(Omphalina_epichysium,(Omphalina_philonotis,Omphalina_sphagnicola))),((Arrhenia_auriscalpium,Arrhenia_lobata),(Omphalina_viridis,(Omphalina_obscurata,Phaeotellus_griseopallidus)))))))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3316]


END;