#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 09, 2026; 2:50 GMT TreeBASE (cc) 1994-2008 Study reference: Lutzoni F. 1997. Phylogeny of lichen- and non-lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets. Systematic Biology, 46(3): 373-406. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S383] [ The following blocks are input data for analysis step 440 ] BEGIN TAXA; TITLE TaxaForAnalysisStep440; DIMENSIONS NTAX=31; TAXLABELS Arrhenia_auriscalpium Arrhenia_lobata Chrysomphalina_chrysophylla Clitocybe_lateritia Gerronema_marchantiae Gerronema_strombodes Gerronema_subclavatum Hygrocybe_citrinopallida Lentinus_lepideus Multiclavula_corynoides Multiclavula_vernalis Omphalina_brevibasidiata Omphalina_epichysium Omphalina_ericetorum Omphalina_grisella Omphalina_grossula Omphalina_hudsoniana Omphalina_luteovitellina Omphalina_obscurata Omphalina_philonotis Omphalina_pyxidata Omphalina_rivulicola Omphalina_rosella Omphalina_sphagnicola Omphalina_velutina Omphalina_velutipes Omphalina_viridis Omphalina_wynniae Phaeotellus_griseopallidus Rickenella_mellea Rickenella_pseudogrisella ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2628] TITLE ITS2; LINK TAXA = TaxaForAnalysisStep440; DIMENSIONS NCHAR=85; FORMAT DATATYPE=Standard SYMBOLS= "a c g t @" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 ] [ . . . . . . . . ] Arrhenia_auriscalpium aatt@atcaac@@t@ct@gaaga@ctttttgg@a@ct@@tgga@gtgccggtcagctcctcttcaaatgcataagttga@c@aat Arrhenia_lobata aatt@atcaac@@t@ct@ga@g@g@tttttgg@a@ct@@tgga@gtgccggtcagctcctcttcaaatgcataagttga@c@aat Chrysomphalina_chrysophylla aatt@ctcaat@ct@cat@@@@@@@@@@ttgg@atgt@@tgggggtgccggt@ggctcc@ctttaattgcattagttga@c@aat Clitocybe_lateritia aatt@ctcaac@ct@cttcat@t@@tttttgg@atatg@@gga@gtgc@ggtcggctcttctt@aaatgcattagttga@cc@at Gerronema_marchantiae aatt@atctaagct@ct@@@@@@gctt@@@gg@aact@@tgggggtgccgg@cggctcccctt@aaatgcatta@tt@a@@@att Gerronema_strombodes aatt@ctcaaa@aa@cct@aaccg@tttttgg@atgt@@@gagggtgctggtcggctcc@ctttaaatgcattag@tga@c@tat Gerronema_subclavatum aatt@ctcaaa@aagcct@aactg@tttttgg@atgt@@@gagggtgctggtcggctcc@ctttaaatgcatcagttga@c@tat Hygrocybe_citrinopallida aatt@ctcaac@tt@catca@g@g@tt@ttgg@at@t@@tgga@gtgctggtcggctcctcttgaa@tgcattagttgaac@@@t Lentinus_lepideus aagc@ctcaac@ca@@aaga@c@gctt@@@gt@aga????????????????????????????????????????????????? Multiclavula_corynoides aagctctcaa@gct@@@@ggtc@gctttttgg@acgt@@@gg@a@@ac@g@t@gg@@@@tct@aaaatacattagtt@?tcaaat Multiclavula_vernalis aagctctcaa@gct@@@@ggt@tgctttttgg@atat@@@gg@a@@gc@g@t@ag@@@tcc@@taaatgcattagtt@?tcaact Omphalina_brevibasidiata aatt@ctcaac@ct@tctc@tg@gctttttgg@a@ct@@tgggggtgctggtcggctcctcttgaa@tgcattagtt@@tctaat Omphalina_epichysium aatt@atcaac@@t@tttcaag@g@tttttgg@a@ct@@tgga@gtgccggtcggctcctctttaaatgcattagttga@c@aat Omphalina_ericetorum aatt@ctcaac@ct@ctt@aggggctt@ttgg@agc@@@@@@a@gtgctggt@ggctcctctt@aaactcattagttga@c@aat Omphalina_grisella aatttctcaaagct@c@tg@@ggg@@@@ttgg@at@t@@tggaggtgccggt@ggctcctctttaaatgcattagttgata@aat Omphalina_grossula t@gc@atc@@@g@t@c@@ga@cggcc@@@@gg@a@agggtggaggtgccggtcggctcctct@caaacgcattagttga@c@gct Omphalina_hudsoniana tatt@atcaac@c@@@ttgaacaagtttttgg@a@ct@@tggaagtgccggtcggctcttct@caaatacattag@tga@c@aac Omphalina_luteovitellina tacc@atcaac@ca@@ttga@c@ggtttttgg@a@ct@@tgggggtgctggtcggctctcctt@aaacgcatcag@tga@c@aac Omphalina_obscurata aatt@atcaac@@t@c@@gaaaaactttttgg@at@t@@tgga@gtgcaggtcggctcctcttgaaatgcattag@tga@c@aat Omphalina_philonotis aatt@atcaac@@t@tttcaag@g@tttttgg@at@t@@tgga@gtgctggtcagcttctctttaaatgcattagttga@c@aat Omphalina_pyxidata aatt@ctcaac@ct@tttca@@@gctttttgg@atctg@@gg@ggtgcaggtcagctcccctt@aaatgcattagttga@ct@at Omphalina_rivulicola aatt@ctcaac@ct@cttca@@@gctttttgg@atgtg@@gg@ggtgcaggtcagctcccctt@aaatgcattagttgat@t@at Omphalina_rosella aatt@ctcaat@ct@cct@@@gagctttttgg@at@t@@tgggagtgctggtcagctctccttgaa@tgcattagtt@atc@@at Omphalina_sphagnicola aatt@atcaac@@t@tttcaag@g@tttttgg@a@ct@@tgga@gtgctggtcagctcctctttaaatgcattagttga@c@aat Omphalina_velutina t@gt@atc@@@g@t@c@@ca@cggc@@@@@ggga@agg@tggaggtgccggtcggctcctct@caaatgcattag@@ga@c@gct Omphalina_velutipes aatt@ctcaac@@t@ttcca@g@g@tttttgg@a@ct@@tgga@gtgctggtcggctcctctttaaatgcattag@tga@c@att Omphalina_viridis aatt@atcaac@@t@@t@gaaaagctttttgg@a@ct@@tggaggtgccggt@ggctcctctttaaatgcatcagatga@c@aat Omphalina_wynniae aatttctcaaagct@cctg@@ggg@@@@ttgg@at@t@@tggaggtgccggt@ggctcctctttaaatgcattagttgata@aat Phaeotellus_griseopallidus aatt@atcaac@@t@c@@gaaaatctt@ttgg@a@at@@tgga@gtgcaggtctgctcctcttgaaatgcattag@@ga@c@aat Rickenella_mellea aatt@ctcaac@ct@cttc@t@tgctttttgg@at@t@@tgggagtgctggtcggctctccttgaa@tgtattagtt@a@@agat Rickenella_pseudogrisella aatt@ctcaac@ct@cct@a@@agctttttgg@atgt@@@gggggtgctggtcggctccccttgaaa@gtattagat@atc@@a? ; END; BEGIN SETS; CHARSET ITS2 (CHARACTERS = ITS2) = 1-85; END; [ The following blocks are output data for analysis step 440 ] BEGIN TREES; TITLE Tb5220; LINK TAXA = TaxaForAnalysisStep440; TREE Fig._2b = [&R] (Multiclavula_vernalis,Multiclavula_corynoides,(Rickenella_mellea,(Omphalina_brevibasidiata,(Omphalina_rosella,Rickenella_pseudogrisella,(Omphalina_ericetorum,(Gerronema_strombodes,Gerronema_subclavatum),(Clitocybe_lateritia,(Omphalina_rivulicola,Omphalina_pyxidata)),(Hygrocybe_citrinopallida,(Chrysomphalina_chrysophylla,(Omphalina_wynniae,Omphalina_grossula))),(Omphalina_velutipes,(Omphalina_epichysium,(Omphalina_philonotis,Omphalina_sphagnicola))),(((Omphalina_luteovitellina,Omphalina_hudsoniana),(Gerronema_marchantiae,(Omphalina_grisella,Omphalina_velutina))),(Omphalina_viridis,((Arrhenia_auriscalpium,Arrhenia_lobata),(Omphalina_obscurata,Phaeotellus_griseopallidus))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3317] END;