#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 21, 2025; 6:37 GMT TreeBASE (cc) 1994-2008 Study reference: Lohtander K., Pasonen H., Aalto M., Palva T., Pappinen A., & Rikkinen J. 2008. Phylogeny of chitinases and implications for estimating horizontal gene transfer from chitinase transgenic silver birch (Betula pendula). Environmental Biosafety Research, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2145] [ The following blocks are input data for analysis step 4475 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4475; DIMENSIONS NTAX=28; TAXLABELS Arabidodsis_thaliana_2 Arabidopsis_thaliana_1 Arabidopsis_thaliana_19 Arabidopsis_thaliana_21 Arabidopsis_thaliana_24 Arabidopsis_thaliana_3 Beta_vulgaris_22 Beta_vulgaris_23 Betula_pendula_27 Betula_pendula_28 Brassica_napus_20 Burkholderia_gladioli_5 Nocardiopsis_prasina_11 Oryza_sativa_14 Oryza_sativa_15 Phaseolus_vulgaris_25 Phytophthora_infestans_4 Picea_glauca_12 Saccharum_officinale_16 Streptomyces_coelicolor_7 Streptomyces_griseus_10 Streptomyces_lavendulae_6 Streptomyces_olivaceoviridis_9 Streptomyces_thermoviolaceus_8 Triticum_aestivum_13 Vigna_unguiculata_26 Zea_mays_17 Zea_mays_18 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3809] TITLE 'Chitinases, Fig. 2'; LINK TAXA = TaxaForAnalysisStep4475; DIMENSIONS NCHAR=719; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidodsis_thaliana_2 AGAACTCTCTACGACCAAATCTTCATCC-ACAAGGACAACAACGCATGCC-CTGCAAAAGGTTTCTACCCCTATGAAGCTTTCGTGGAGGCTACAAGATCCTTCCCG------AAGTTCGGGAGCGTAGGAAACTTTTGGACAAGGCGACGCGAAGTGGCTGCGTTTTTGGCGCAGATATCTCACGAGACAACAGGTGG---TTGGGCCACGGCACCAGACGGACCATATGCGTGGGGATTGTGTTTTAAAGAGGAAGTGAGTCCACAG--AGTAATTATTGTGATGCTTCTAATAAGGAT---TGGCCTTGTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTCCCATTCAACTATCTTGGAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGACGGTTTACAGAACCCAGAACTTGTAGCCAACAACTCCGTTTTAGCTTTCAAGACAGCTCTTTGGTTTTGGATGACCGAAC---AGACTCCTAAACCGTCCTGCCATAACGTTATGGTCAACC-GATACAGACCGACGAAAGCAGATAGAGCAGCAAACCGGACTGTCGGTTATGGTTTAGTCACCAACATCATAAACGGCGGTTTAGAATGTGG----GATTCCAGGAGAT--GGACGGGTCACTGACCGGGTCGGGTATTTCCAAAGATACGCTCAGTTGTTTAAAGTCACCACAGGACCTAATTTAGACTGCGAG Arabidopsis_thaliana_1 ???TATCAATTCGAGA--ATCTATTCTCTAAGCGTAACAGTCCAGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTCATTACTGCGGCTGCCGAGTACCAGCCTCTTGGTTTCGGTACTGCTGGTGAGAAACTTCAAGGGATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGGAGCAAAACCTCATGCGGGTACGGGGTTGCAACAGG---CGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGT--CCTGATCAGCTTTATTGCGATGATTACTACAAATTGACATATCCTTGTACTCCTGGTGTCTCGTACCACGGTCGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAGGCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTCGAGAACAATGCTACGTTAGCGTTTCAAGCGGCGATTTGGCGGTGGATGACGCCACCGAAGAAGCATTTACCGTCGGCGCACGATGTTTTCGTCGGAAAATGGAAGCCA-ACAAAGAATGACACTGCTGCAAAACGAACTCCGGGGTTTGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACA---GCGGATTCGATAACGATGAGATGAACAACATTGTTTCTCATTATTTGTATTATCTTGATCTGATAGGTGTTG-GACGAGAAGAAGCTGGTCCTCACGA Arabidopsis_thaliana_19 CCTGACTTCTTTAACTCTATACTAAACC-AAAGA------GGTGATTGTC-CTGGCAAAGGATTCTACACTCACGACACCTTCATGGCCGCAGCTAATTCTTACCCT------AGCTTCGG------T-G-----CTTCCATCTCCAAACGCGAAATCGCGGCGTTTTTCGCTCACGTAGCCCAAGAAACAGGGTTC-----ATGTGTTACATTGAG-----GAAATTGA--TGGACCAGCCAAGGCCGCATCCGGAGAG--T--ACTG--C----GACACAGAGAAACCAG---A----G---TTCCCATGTGCACAAGGAAAGGGCTACTATGGCCGTGGTGCAATCCAGCTCTCTTGGAACTACAACTACGGTCTCTGTGGCAAAGCCTTGGACGAGAACTTATTGGCTTCACCAGAGAAAGTTGCTCAAGACCAGGTTCTTGCCTTCAAGACCGCTTTCTGGTTCTGGACCACT---A---AT----------GTTC---GCACGAGT------T------------------TTAAATCG-----------------------GGCTT-TGGCGCAACAATCAGGGCAGTGAATAGTAG---GGAGTGTAGC---GGAGGAGATTCTACAGCCAAAGCCGCCAACAGGATTAAGTATTTCCAAGACTATTGTGGCAAGCTTGGAGTTGCACCTGGAGATAACCTCACTTGTTAA Arabidopsis_thaliana_21 CAAATTTTCTTTAACAACATTATCAACC-AAGCC--G-GTAATGGATGCG-CGGGAAAAAGTTTTTACACCCGGGACTCTTTCATTAACGCCACCAATACTTTCCCC------AGCTTTGC------------TAATACCGTTACTAGACGTGAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACAC-----TTCTGCTACATAGAA-----GAGATAAA-CGGGGCGTCACG-T----------GTC----A--TGTG--C----GACCAG-AA-CAACAG-GCA----A---TATCCATGTGCACCGGCCAAGAGCTACCATGGCCGTGGTCCGCTCCTACTATCATGGAACTTCAACTATGGAGCATGCGGCCAGAGTCTCGGCTTAGACCTCCTACGCCAGCCCGAGCTGGTGAGTAGTAACCCAGTCGTGGCTTTCAGGACGGCTCTGTGGTTTTGGATGA---------AG--A---------GCG--TGAGGCCT----------------GTA------TTGA-ACC-A--------------------GGGATT-TGGAGCCACCATAAGAGCCATCAGCGGTT---TCGACTGTG------ACGGTAGGAACTTAGGTGGGGTGAACGCAAGGATTGGCTACTATAGAGACTATTGTGGGCAGCTTGGTTTGGACCCTGGCGCCAACATAACTTGCTAA Arabidopsis_thaliana_24 CAAGAATTCTTCAATGGAATCATCAGTC-AAGCC--GCG-TCTAGTTGCG-CCGGCAATAGATTTTACAGTCGGGGAGCTTTTCTTGAGGCCTTAGACTCATATTCT------CGTTTCGGTAGAGTTGGATCGACCGACGACTCTAGGCGTGAGATTGCAGCGTTCTTTGCTCATGTCACACATGAAACAGGACGTAAT--TTCTGCTACATAGAA-----GAGATAGA-CGGAGCC--TCA-AA--------GGAT----T--ACTG--C----GACGAG-AA--TGCAACACA----A---TATCCATGCAATCCTAACAAAGGCTACTACGGCCGCGGACCGATCCAACTCTCTTGGAATTTCAACTACGGGCCAGCCGGGACAGCAATTGGTTTCGACGGCCTGAATGCACCGGAAACAGTAGCCACGGATCCAGTCATATCCTTCAAAACCGCCTTGTGGTACTGGACCAAT-------AG--G--G-----TTCA--GCCTGTT-------------------A------TCTC-TCA-A---------------------GGTTT-TGGTGCAACAATCCGTGCCATTAACGGTGCTTTGGAGTGTG------ACGGGGCCAACACAGCCACCGTTCAAGCTAGAGTTCGTTACTACACGGATTATTGTCGTCAACTTGGCGTTGATCCTGGAAACAACCTCACTTGCTAA Arabidopsis_thaliana_3 ???TCTCAGTTCGATGATATGCTTAAGC-ATAGGAATGATGCCGCTTGTC-CTGCTAGAGGTTTCTACACTTACAACGCCTTTATCACCGCTGCAAAGTCCTTCCCC------GGTTTTGGCACCACCGGAGACACCGCCACGAGGAAGAAGGAGGTCGCCGCCTTCTTCGGCCAGACTTCCCATGAAACTACAGGTGG---ATGGGCTACAGCACCAGACGGACCATATTCATGGGGCTACTGTTTCAAGCAAGAACAGAAT--CCTG--CTTCAGACTAC-TGTGAACCGAGCGCCACG---TGGCCATGCGCATCTGGCAAACGCTACTACGGAAGAGGACCAATGCAACTGTCGTGGAACTACAATTACGGTCTATGCGGTAGAGCAATAGGAGTTGACTTACTCAACAACCCTGACCTTGTTGCCAACGACGCAGTGATCGCTTTCAAAGCCGCGATTTGGTTCTGGATGACTGCTC---AGCCTCCCAAACCGTCTTGCCATGCCGTGATAGCCGGCCAGTGGCAGCCTTCAGAC-GCCGACCGTGCCGCCGGGAGATTACCGGGTTATGGAGTGATTACGAACATCATTAACGGTGGATTGGAGTGTGG-----ACGTGGCCAAGACGGGAGAG-TCGCCGATCGTATAGGGTTTTATCAGAGGTATTGTAACATATTTGGTGTTAATCCTGGTGGTAATCTTGATTGTTAC Beta_vulgaris_22 CAAGCATTCTTTGATGGGATTATAGGCC-AAGCT---GCTGCATCTTGTC-CTGGGAAAAACTTTTACACTCGCGCTGCTTTTCTTAGTGCGGTTGA-TCCTA-----------AGTTTGGAAACGAAGGTTCCAGTGATGATAACAAGAGAGAAATCGCTGCCTTCTTTGCTCATATCTCGCATGAGACTACCAAT-----TTGTGCCACATAGAA-GAGAGAGATGGAGATGTTGGTGAC------------GC-C----T--ACTG--C----GATCAAGACAAGGCAGCTCA----A---TACCCTTGCGCTGCAGGCAAGAAGTACTACGGGAGAGGACCTCTTCAACTGTCATGGAACTACAACTATGCTCTTGCAGGACAGGCGATTGGATTTGATGGTCTTGGAAACCCTGAAAAGGTGGCTACTGATGTTAATACATCTTTCAAGGCTGCAATGTGGTTTTGGATGACT-------AAT---------GTTCACTCCGTTAT---------------------------GAA--CCAA---------------------GGTTT-TGGAGCCACCACCAAAGCTATTAATGGCGCGCTTGAATGCA------ATGGCCAAAACCAGGATCAAGCCAATGACCGTATTCAGTTTTATAAGAAGTATTGTGCTGATTTTGGTGTTGCTCCTGGTGATAATCTTACATGTTAA Beta_vulgaris_23 GATGCGTTCTTTAATAGGATCATTAACC-AAGCTA--GC-GCTAGCTGTG-CTGGTAAGAGATTCTACACCAGGGCTGCCTTTTTGAGTGCTCTCAGATTTTATCCC------CAGTTTGGTAG---TGGATCCTCCGATGTCGTTAGGCGTGAAGTTGCTGCATTCTTTGCCCATGTCACCCATGAAACTGGACAT-----TTTTGCTACATAGAG-----GAGATTG--CAAAGTC-AAC-------------C------T--ATTG--T--CAGTCAAG-----TGCAG--CA--------TTTCCATGCAACCCAAGTAAGCAATACTACGGAAGGGGGCCTCTTCAGATCACATGGAATTATAACTACATACCAGCTGGTCGAAGCATTGGATTTGATGGTCTGAATGCACCAGAAACAGTTGCCAACAATGCCGTGACTGCATTCCGGACAGCCTTCTGGTTTTGGATGAAC---A---AT----------GTCCACTCTGTTATC-----GT------------------CAATGGCCAA---------------------GGGTT-CGGGGCCAGCATTCGAGCTATCAATGGAA---TCGAATGTA------ATGGTGGTAACTCTGCTGCTGTTACTGCTCGTGTTGGGTACTATACTCAGTATTGTCAACAGCTTGGCGTTTCGCCAGGGAATAACCTCCGTTGCTAG Betula_pendula_27 GCAGAATTCTTCAATGGGATACTCGATG-AGGCC---GATGCAAGTTGTG-CTGGAAAGAACTTTTTCACACGAGCAGCGTTTCTTGAAGCTCTCAATTCATTTAAT------GAATTTGGTAGGATTGGTTCGGTTGATGATTCTAAGCGCGAGATTGCAGCTTTCTTTGCCCATGTTACACATGAGACTGGACAC-----TTTTGCTATATAGAG-----GAGATAGA-TGGTGCC--TCCAA---------GGAC----T--ACTG--T----GACGAG---ACAAACACAGAA-------TATCCCTGCAACCCGGACAAAGGTTACTATGGCCGTGGACCAATTCAGCTATCATGGAATTTCAATTACGGACCAGCAGGAAAGAGTATTGGGTTCGACGGGTTAAACTCTCCTGAAACTGTCGCAAATGACCCT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Betula_pendula_28 CCGGATTTCTTTAATGGGATACTTAATC-AGGCCA---GTGGAGACTGTC-CAGGGAAGAGCTTCTACACCAGGGAAGCATTCCTTGATGCTCTTAAGTCGTATACT------CAGTTTGGCACTACTGATTCCGCTGATGATTCTAAGCGTGAGATTGCCGCTTTCTTCGCCCATGTCACGCATGAGACTGGATTT-----TTGTGCCATATAGAA-----GAGATAGA-TGGTGCT--TCCAA---------GGAC----T--ACTG--T---------AAA--CATACGGACACAGAG---TATCCATGCAACCCAAACAAAAATTACTATGGTCGTGGACCGCTTCAGCTATCCTGGAATTACAATTACGGAGCAGCCGGAAAGAGTATTGAATTCGACGGATTAAACTCTCCTGAAACT??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Brassica_napus_20 CAAGCTTTCTTTAACGGTATTATCAATC-AAGCC--G-GTGGTGGTTGCG-CCGGGAAGAATTTCTACACCCGTGATTCTTTCATTAACGCCGCAAATACTTTCCCA------AACTTTGC------------CAATTCGGTTACTAGACGTGAAATTGCAACCATGTTTGCTCATTTCACCCACGAGACTGGACAT-----TTCTGCTACATAGAA-----GAAATAAA-CG--G---AGCT-TCACG-----TGAC----T--ACTG--C----GACGAG-AA-CAACAG-GCA----G---TACCCATGTGCACCAGGCAAAGGCTACTTCGGTCGTGGTCCGATTCAACTATCATGGAACTACAACTACGGAGCTTGTGGCCAGAGTCTCAACCTTAACCTCTTAGGCCAGCCCGAGCTAGTGAGTAGCAACCCAACTGTCGCTTTCAGGACGGGTCTGTGGTTTTGGATGAAT-------A-------------GC---GTAAGAC-------CG--------GTA------CTAA-ACC-A------A--------------GGGTT-TGGAGCCACCATTAGAGCCATCAATGGAA---TGGAGTGTA------ACGGTGGGAACTCAGGTGCGGTCAATGCAAGGATTAGGTACTATAGAGACTATTGTGGACAGCTTGGTGTGGATCCTGGTCCTAACCTTAGCTGCTAA Burkholderia_gladioli_5 GGCACCGATTTCCCGCTGAGCCGCGCGA-CCTTCGAGCA-GATGTTCCCGACCCGCAACAGCTTCTACACCTACGACGGCCTGGTCGGCGCGCTGAAGAGCTACCCC------GATTTCGCCGGCGAGGCCAGCCAGGACGTGCGCAAGCAGGAAATCGCGGCTTTCCTGGCAAACGTTTCGCATGAAACGGGCGGC-----CTGGTGTACATCCGC-----GAATCGAA-CCAGGCG-AACT-----------GGA--------ACAG--C----TACTGC-AG-CAGCGG--CA----A---TTG--CGGC-GGCAAGCA-----GTATTACGGCCGTGGCCCGATGCAACTGAGCTGGGACTACAACTACAAGGCCGCCGGCGATGCGCTGGGCCTGAACCTGCTCGGCAACCCGGATTGGGTGGCCACCGACGCGACGATCTCCTGGGCCACCGCGATCTGGTTCTGGATGACG---C---AA--TCGGGCGCCGGCA--CCATGACA------CC--------GCA------CCAG-GCC-ATGGC-CAGCGGCC------GCGGCTT-CGGCGAGACGATCCGCTCGATCAACGGCTCGCTCGAGTGCA------ACGGGCGCAATCCGGCCCAGGTGCAGAGCCGGGTCGATGCCTACAAGCGCTTCGTCGGCCTGCTCGGCACGACCACCGGCAGCGGCCCGACCGGCTGC Nocardiopsis_prasina_11 CCGAACGACTTCGTCGTCAGCGAGGCCC-AGTTCAACCA-GATGTTCCCGAACCGGAACCCCTTCTACACCTACTCGGGCCTCACCACCGCCCTGAGCTCCTACCCG------GGCTTCACCAACACCGGCAGCGTCGAGGTGCAGCGACGCGAGGCCGCGGCCTTCCTGGCCAACGTCAGCCACGAGACCGGCGGG-----CTGGTGTACATCAAG-----GAGATCAA-CGAGGAC-AACT-ACCC------GCAC----T--ACTG--C----GACCTG-AGCCAGCCCTTCG----G---CTGTCCGGCCGGCCAGTCCG--CCTACTACGGCAAGGGCCCGATCCAGCTGGCGTGGAACTACAACTACAAGGCCGCCGGTGACGCCCTCGGCATCGACCTGCTGAACAACCCCTACCTGGTCGAGCAGGACGCCTCGATCGCCTGGCGGACCGGACTCTGGTTCTGGAACACC---C---AG--TCCGGTGCCGGGA--CGATGTCG------GG--------GCA------CACC-GCC-ATCGT-CGACGGTC------ACGGCTT-CGGCGAGTCGATCCGCTCCATCAACGGCTCGATCGAGTGCA------ACGGCGGCAACCCCGGACAGGTGCAGAGCCGCATCAACACGTTCACCCAGTTCACCCAGATCCTCGGCACCACCACGGGGTCGAACCTGAGCTGCTGA Oryza_sativa_14 GAGGCGTTCTTCAACGGGATCAAGAACC-AGGCC--CCG-AACGGCTGCG-CCGGTAAGAGCTTCTACACACGGCAATCGTTCCTGAACGCCGCCCGCTCCTACTCG------GGCTTCGCCAATGACCGCACCAACGACGACTCCAAGCGCGAGATCGCTGCCTTCTTCGCGCATGTCACACACGAGACTGGACAT-----ATGTGCTACATCAAT-----GAGATAAA-TGGGGCA-AACA-T---------GGAC----T--ATTG--T----GACAAG-AG-CAACAA-ACA----G---TGGCCGTGCCAGCCGGGCAAGAAGTACTACGGACGCGGGCCGCTGCAGATCTCATGGAACTTCAACTACGGGCCGGCGGGAAAGAACATCGGGTTCGACGGGCTAAGGGACCCAGACAAGGTGGCGCAGGACCCGACAATCTCTTTCAAGACGGCCCTCTGGTTCTGGATGAAC---A---A----------CGTGCA--CCAGGTG-------------------A------TGTC-GC------------A--G--------GGGTT-TGGCGCCACCATCCGGGCCATCAACGGTGCGCTCGAGTGCA------ACGGCAAGAACCCCGGTGCCGTCAACGCAAGGGTAAACTACTACAAGGACTACTGCCGCCAGTTCGGCGTCAGCCCGGGGGGCAACCTCTACTGTTGA Oryza_sativa_15 GAGGCGTTCTTCAATGGGATCAAGAACC-AGGCC--CCG-AACGGTTGCG-CCGGCAAGAACTTTTACACACGACAGTCGTTTCTTAACGCTGCCCACTCCTACTCG------GGCTTCGCCAGGGACCGCACCAACGATGACTCCAAGCGTGAGATCGCTGCCTTCTTTGCCCACGTCACTCATGAGACCGGACAT-----ATGTGCTACATCAAC-----GAGATAAA-CGGGGCG-AGCA-T---------GGAC----T--ACTG--C----GACAAG-AA-CAACAA-GCA----G---TGGCCGTGCCAGCCGGGGAAGAAGTACTACGGGCGCGGGCCGCTGCAGATCTCGTGGAACTACAACTACGGGCCTGCGGGGCAGAACATCGGGTTCGACGGGCTGAGGGACCCGGACAGGGTGGCGCAGGACCCGACGATCTCCTTCAAGACGGCGCTCTGGTTCTGGATGAAC---A---A----------CGTGCA--CCAGGTG-------------------A------TGTT-GC------------A--G--------GGGTT-CGGCGCCACCATCCGGGCCATCAACGGTGCGCTCGAGTGCA------ACGGCAAGAACCCCGGCGCCGTCAACGCAAGGGTAAACTACTACAAAGACTACTGCCGCCAATTCGGCGTTGACCCGGGTGGCAACCTTTACTGTTGA Phaseolus_vulgaris_25 GCAGATTTTTTCAACGGCATAATTGATC-AAGCT---GATTCTGGTTGTG-CTGGCAAGAACTTTTACACAAGAGACGCTTTCCTCAGTGCTCTCAATTCCTACACT------GACTTCGGTAGAGTTGGTTCCGAGGATGACTCCAAACGCGAGATTGCAGCTGCTTTTGCCCATTTCACACATGAAACTGGACAT-----TTTTGCTACATCGAA-----GAGATAGA-TGGTGCA-AGC--A--A------GGAT----T--ACTG--C----GACGAGGAATCGATAGCACA----G---TATCCATGTTCTTCGAGCAAAGGGTACCACGGTCGTGGTCCGATCCAATTGTCTTGGAACTTCAACTATGGACCAGCAGGAAGTGCGAACAATTTCGACGGATTGGGCGCTCCAGAGACAGTGTCGAACGATGTTGTGGTGTCTTTCAAGACAGCATTGTGGTACTGGATGCAG---C---A----------CGTGCG--GCCTGTC-------------------A------TAAA-CC--A--------------------GGGCTT-CGGTGCAACCATCAGAGCCATCAATGGTGCACTCGAGTGTG------ATGGTGCCAACCCCACCACTGTTCAGGCTCGCGTTAATTACTACACAGAATACTGCAGACAATTGGGTGTTGCCACCGGTGATAATCTCACTTGCTAA Phytophthora_infestans_4 ???GCTCGCTTCTTCG--ATC-AGGATC-GTTTCCAGGA-GGTTTTCCCGGACGCTGTGGAGCTCTACAACTTCAACGGTCTTGTGGATGCGGCCAGCAAGTACAGC------GAATTCGCTAATACGGGCAACGACGACAATGACAAGCGTGAGCTGGCAGCGTTCCTGGCTCAAACAGCTCACGAGTGCGACAGC-----TTCAAGGCCGCGGAA-----GAGTACGC-CCGTGAC-ACCT-ACTCGGTGTGGCAG----T--ACTG--C----GACAAC-GC-CACCTACACG----T---GTGCCC--CCGGTC--GCCG---TTACCACGGCCGTGGCCCCATTCAGCTCTCATGGAACTACAATTACTACAATGCTGGCGAAGCTCTGGGCATTGATCTCTTAAACAACCCGGACATCGTCGCGACAGACACGACGGTGACGTGGATGACTGCGCTTTGGTACTGGATGACT---C---CG--CATGG---CGGCC--GTGTGAT-------C----------CA------CGAC-ATC-GTCGC-CGGTGAGA------ACGGATT-CGCTCAATCCACCGATATCATCAACGGTGGTCTGGAGTGCGGTCCGGACGCTCCCAACACGTCGAACGAGCAACAACGTATCACGTACTTCACCAAGATGTGCGAGGCTCTGGGCGTGGAGCCTCTGGGCGCCACCTCGTGCAAC Picea_glauca_12 CAGAGTTTCTTCAATGGCCTTGCGGGTG-GAGCT---GGCAGCTCCTGCG-AGGGCAAGGGATTCTACACTTATAACGCTTTCATCGCAGCGGCCAATGCGTTTTCT------GGATTTGGCACCACCGGATCCAACGACGTCAAAAAGAGAGAACTGGCTGCCTTCTTCGCTAATGTAATGCACGAAACTGGAGGG-----TTGTGCTACATCAAC-----GAGAAGAACCC--TCC-AAT------------GAAG----T--ACTG--T--CAGAGTTC--A--AGCAC--------G---TGGCCGTGTACGAGCGGTAAGAGCTACCATGGACGTGGGCCTCTCCAGTTGAGCTGGAATTACAATTATGGAGCGGTTGGGAAGAGCATTGGGTTCGACGGGCTGAACAACCCAGAGAAGGTGGGGAAAGACCCCACCACCTCGTCCAAGACGGCCGTGTGGTTCTGGATGAAG---A---ATA----GAAACTGCCA--CTCCGCC-------------------A------TAACCTC--AGGG---A-------------AGGGTTTGGGTGGAACAATCAAAGCCATCAACAGCA---TGGAATGCA------ACGGCGGAAACAGTGGCGAAGTGAACAGCAGAGTGAACTACTACAAGAAAATATGTAGCCAGTTGGGTGTCGACCCTGGAGCCAATGTCTCCTGCTAA Saccharum_officinale_16 GACGCATTCTTCAACGGCATCAAGAACC-AGGCC--GGG-AACGGGTGCG-AGGGCAAGAACTTCTACACCCGGAGTGCGTTCCTAAGCGCCGCCGACTCGTACAAA------GGCTTCG------GTGGCGGGTCGGTGGAGGGCAAGCGCGAGATCGCCGCCTTCTTCGCGCACGTCACGCACGAGACCGGACAT-----TTCTGCTACATCAGC-----GAGATCAA-CAAGAAC-AAC------------GC-C----T--ACTG--C----GACTCG-AG-CAACAG-GCA----G---TGGCCGTGCGCCGCGGGACAGAAGTACTACGGGCGCGGCCCGCTGCAGATCTCGTGGAACTACAACTACGGGCCTGCCGGGAGGGACATCGGCTTCAACGGGCTCGGGGACCCCAACAGGGTGGCGCAGGACGCCGTGATCGCGTTCAAGACGGCGCTCTGGTTCTGGACGAAC---A---A----------CGTGCA--CCGGGTG-------------------A------TGTC-GC----------A--G----------GGGTT-CGGAGCCACCATCCGGGCTATCAACGGAGCCCTCGAGTGCA------ACGGAAACAACCCCGCCCAGATGAACGCGCGGGTGGGCTACTACAAGCAGTACTGTCAGCAGCTCGGCGTCGACCCGGGGCCCAACCTCACCTGCTAG Streptomyces_coelicolor_7 GCCGCCGAATTCGTGGTCAGCGAAGCCC-AGTTCGACCA-AATGTTCCCGAGCCGGAACTCCTTCTACACCTACAGCGGCCTCACCGCCGCGCTCAGCGCCTACCCG------GGGTTCTCGAACACCGGCAGCGACACCGTGAAGAAGCAGGAGGCCGCCGCCTTCCTCGCCAACGTCGGCCACGAGACCGGCGGG-----CTGGTGTACGTGGTG-----GAGCAGAA-CACCGCC-AACT-ACCC------GCAC----T--ACTG--C----GACGCG-TCCCAGCCGTACG----G---CTGCCCGGCCGGCAACGACA--AGTACTACGGGCGCGGGCCCGTCCAGCTGAGCTGGAACTTCAACTACAAGGCCGCCGGGGACGCCCTCGGCATCGATCTGCTCAACAACCCCGACCTGGTCCAGAACGACTCGGCCGTGGCCTGGAAGACGGGCCTGTGGTACTGGAACACC---C---AG--ACCGGACCCGGCA--CCATGACC------CC--------GCA------CGAC-GCC-ATGGT-CAACGGCG------CCGGGTT-CGGCGAGACCATCCGGTCCATCAACGGCAGCCTGGAGTGCG------ACGGGGGCAATCCCGGGCAGGTCCAGAGCCGGATCGACAACTACGAGCGCTTCACCCAGCTCCTCGGTGTCGAGCCCGGCGGCAACCTGAGCTGTTAG Streptomyces_griseus_10 AACAACGGCTTCGTCGTCAGCGAGGCCC-AGTTCAACCA-GATGTTCCCGAACCGGAACGCCTTCTACACCTACAAGGGCCTCACCGACGCCCTGAGCGCCTACCCG------GCTTTCGCCAAGACCGGCAGCGACGAGGTGAAGAAGCGCGAGGCCGCGGCCTTCCTCGCCAACGTCAGCCACGAGACCGGCGGA-----CTGTTCTACATCAAG-----GAAGTCAA-CGAGGCG-AACT-ACCC------GCAC----T--ACTG--C----GACACC-ACGCAGTCGTACG----G---CTGCCCGGCCGGCCAGGCCG--CCTACTACGGCCGCGGCCCGATCCAGCTGAGCTGGAACTTCAACTACAAGGCGGCCGGTGACGCCCTGGGCATCAACCTGCTCGCCAACCCCTACCTGGTGGAGCAGGACCCGGCCGTGGCGTGGAAGACCGGCCTCTGGTACTGGAACTCC---C---AG--AACGGCCCCGGCA--CCATGACC------CC--------GCA------CAAC-GCC-ATCGT-CAACAACG------CCGGCTT-CGGCGAGACGATCCGCTCGATCAACGGCGCTCTGGAGTGCA------ACGGCGGCAACCCGGCGCAGGTCCAGAGCCGCATCAACAAGTTCACGCAGTTCACCCAGATCCTCGGCACCACCACGGGTCCGAACCTGAGCTGCTGA Streptomyces_lavendulae_6 GCCGCCGCATTCCCCGTGAGCGAGGCCC-AGTTCAAGCA-GATGTTCCCGAAGCGGAACGCGTTCTATACGTACAAGGGCCTGGTCGCCGCGCTCAAGGCGTACCCG------GGCTTCGCGGGCACCGGCAGCGCCGAGGTCCGGAAGCAGGAGGCCGCCGCCTTCCTCGCCAACGTCGCCCACGAGACCGGCGGA-----CTGGTCTATGTCGTG-----GAGCAGAA-CACCGCC-AACT-ACCC------CCAC----T--ACTG--C----GACCGG-AGCCGGCCCTACG----G---CTGTCCGGCAGGCCAGGCCG--CCTACTACGGTCGCGGCCCGCTCCAGATCAGCTGGAACTTCAACTACAAGGCGGCGGGTGACGCCCTCGGCATCGACCTGCTCCACAACCCCTCGCTGGTGCAGAAGGACGCGGCCGTCTCCTGGAAGACCGGCCTGTGGTACTGGAACACC---C---AG--CGCGGCCCCGGCA--CCATGACC------CC--------GCA------CGAG-GCC-ATGGT-CAACCACC------GCGGCTT-CGGGCAGACCATCCGCAGCATCAACGGCGCCCTGGAGTGCG------ACGGCCACAACCCCGCCCAGGTCCAGAGCCGCGTCGCGAACTACCAGCGATTCACCAAGATCCTCGGCGTGGCGCCGGGCGGCAATCTCTCCTGCTGA Streptomyces_olivaceoviridis_9 GTCGGCACCTTCGTGGTGACCGAGGCCC-AGTTCAACCA-GATGTTCCCGAACCGGAACTCCTTCTACAGCTACAGCGGACTCACCGCCGCGCTCAGCGCCTACCCC------GGCTTCGCGAACACCGGCAGCGACACCACCAAGAAGCAGGAGGCCGCGGCCTTCCTCGCCAACGTCAGCCACGAGACCGGCGGC-----CTGGTGCACGTGGTC-----GAGCAGAA-CCAGGCC-AACT-ACCC------GCAC----T--ACTG--C----GACTGG-AGCCGGCCGTACG----G---CTGCCCGGCGGGCCAGGCGG--CCTACTACGGGCGCGGCCCGATCCAGCTCAGCTGGAACTTCAACTACAAGGCCGCGGGCGACGCGCTCGGCATCGACCTGCTGAACAGCCCCTGGCTGGTCGAGCGCGACTCGGCCGTCGCCTGGAAGACCGCGCTGTGGTACTGGAACACC---C---AG--ACCGGCCCCGGCA--CCATGACC------CC--------CCA------CAAC-GCC-ATGGT-CAACGGCG------CGGGCTT-CGGCCAGACCATCCGCTCCATCAACGGCTCCCTGGAGTGCG------ACGGCAAGAACCCGGCGCAGGTCCAGAGCCGCGTGAACAACTACCAGCGGTTCACCCAGATCCTCGGAGTCTCCCCGGGCGGCAACCTCTACTGCTGA Streptomyces_thermoviolaceus_8 CAGGCCAACTTCGTGGTCTCCGAAGCCC-AGTTCAACCA-AATGTTCCCGAACCGGAACCCGTTCTACACCTACCAGGGTCTGGTCGACGCGCTCAGCGCCTTCCCG------GGCTTCGCGAACACCGGTGACGACACGACGAAGAAGCAGGAGGCCGCCGCCTTCCTGGCCAACGTCAACCACGAGACCGGCGGC-----CTGCAGTACGTGGTC-----GAGCAGAA-CACCGCC-AACT-ACCC------GGCG----T--ACTG--C----GACTGG-AGCCAGCCGTACG----G---CTGCCCGGCCGGCCAGGACG--CCTACTACGGCCGCGGCCCCATCCAGCTGAGCTGGAACTTCAACTACAAGGCCGCGGGTGACGCGATCGGCGTGGACCTGCTGAACAACCCCTGGCTGGTCGAGAACGACCCGGCGATCGCCTGGAAGACCGGCCTGTGGTACTGGAACACC---C---AG--TCCGGCCCGGGCA--CCATGACG------CC--------CCA------CGAC-GCC-ATGGT-GAACCACG------CCGGTTT-CGGCCAGACCATCCGCTCCATCAACGGTTCCCTGGAGTGCG------ACGGCCGGAACCCGGCGCAGGTGCAGAGCCGCGTCGACGCCTACCAGCGCTTCACCTCCATCCTCGGGGTGGCCCCGGGCGACAACCTGTACTGCTGA Triticum_aestivum_13 GACGCGTTCTTCGACGGGATCAAGTCCC-AGGCCGCCGACGGCGGGTGCC-CCGGCAAGAGCTTTTACACGCGCCAGTTTTTCCTGGACGGCGCCCAGGCGAACCCC------GACTTCGGGAAAGGCGGCACCAGCGACGACGGCAAGAGGGAGATAGCCGCCTTCTTCGCCCACTTCACCCACGAGACTGGATAC-----ATGTGCTACATCGAG-----GAGAAGGA-CGGGGCG-AGCC-A---------GAAC----T--ACTG--C----GACACG-AATTACCCG--CT----G---TGGCCGTGTACCTCGGGGAAGGCGTACTACGGGCGCGGGCCGCTGCAGCTGACGTGGAACTACAACTACGGGGCGGCGGGGCAGAAGCTCGGCTTCAACGGGCTCGACAACCCGGAGAAGGTGGCGCAGGACCCGGCGTTGACGTTCCAGGCGGCGTTCTGGTTCTGGATGACC---A---A----------CGTGCA--TCAGGTCG-------------------------TGCC-GC-------------A-G--------GGGTT-CGGCGAGACGAGCAGGAAAATCAACAGTGGC---GAGTGCA------ACGGCGGGAACGCGCCGGCGATGAACGCGCGGGCGAACTACTACGTGGAGTACTGCAAGCAGTTCGGGGTCGACCCGGGGAACAACCTCACTTGCTAG Vigna_unguiculata_26 GACGCATTTTTCAACGGCATAATCGATC-AAGCT---GATTCTGGTTGTG-TTGGCAAGAGCTTTTACGCAAGAGATGCTTTCCTCAGTGCTCTCGATTCCTACACC------GACTTTGGCAGAGTTGGTTCCGAGGATGACTCCAAGCGCGAGATTGCAGCTGCTTTTGCCCATTTCACACACGAAACTGGACAT-----TTTTGTTACATCGAA-----GAGATTGA-TGGTGCG-AGCA-----A-----GGAC----T--ACTG--C----GACGAGGATTCGATTGCACA----G---TATCCATGTTCTTCGAGCAGAGGGTAC-ACGGTCGT--CCCGATCCAATTGTCGTGGAACTTCAACTATGGACCAGCAGGGGAGGCTAACAACTTCGATGGATTGGGCCCCCCGGAAACAGTGTCGAACGATGTTGTCGTGTCTTTCAAGACAGCGTTGTGGTACTGGATGCAA---C---A----------CGTGCG--GCCTGTC-------------------A------TAAA-CC--A--------------------GGGGTT-CGCTGCAACCATCAGAGCCATCAATGGTCAACTCGAGTGTG------ATGGTGCAAACCCCTCTACTGTTCAGGCTCGCGTTAATTACTACACAGAATACTGCAGACAATTGGGTGTGGACACTGGTGATAATCTTACTTGCTAA Zea_mays_17 GACGCGTTCTTCAACGGCATCAAGAACC-AGGCC--GGG-AGCGGGTGCG-AGGGCAAGAACTTCTACACCCGGAGCGCGTTCCTGAGCGCCGTCAACGCGTACCCG------GGCTTCGCCCATGGCGGGACGGAGGTGGAGGGCAAGCGCGAGATCGCCGCCTTCTTCGCGCACGTCACGCACGAGACCGGACAT-----TTCTGCTACATCAGC-----GAGATCAA-CAAGAGC-AAC------------GC-C----T--ACTG--C----GACGCG-AG-CAACAG-GCA----G---TGGCCGTGCGCGGCGGGGCAGAAATACTACGGGCGCGGCCCGCTGCAGATCTCGTGGAACTACAACTACGGGCCCGCCGGGAGGGACATCGGCTTCAACGGGCTCGCCGACCCCAACAGGGTGGCGCAGGACGCCGTGATCGCGTTCAAGACGGCGCTCTGGTTCTGGATGAAC---A---A----------CGTGCA--CGGTGTG-------------------A------TGCC-GC--A------------G--------GGCTT-CGGCGCCACCATCAGGGCCATCAACGGCGCCCTCGAGTGCA------ACGGGAACAACCCCGCCCAGATGAACGCGCGCGTCGGCTACTACAAGCAGTACTGCCAGCAGCTCCGCGTCGACCCAGGGCCCAACCTCATTTGCTAG Zea_mays_18 AGCTCCTTCTTCAACGGCATCAAGAACC-AGGCC--GGG-AGCGGGTGCG-AGGGCAAGAACTTCTACACCCGGAGCGCGTTCCTGAGCGCCGTCAAGGGCTACCCA------GGCTTCGCCCATGGCGGGTCGCAGGTGCAGGGCAAGCGCGAGATCGCCGCCTTCTTCGCGCACGCCACGCACGAGACCGGGCAT-----TTCTGCTACATCAGC-----GAGATCAA-CAAGAGC-AAC------------GC-C----T--ACTG--C----GACCCG-AC-CAAGAG-GCA----G---TGGCCGTGCGCCGCGGGGCAGAAGTACTACGGGCGCGGCCCGCTGCAGATCTCGTGGAACTACAACTACGGGCCCGCGGGGAGGGCCATCGGCTTCGACGGGCTCGGGGACCCCGGCAGGGTGGCGCGGGACGCCGTGGTGGCGTTCAAGGCGGCGCTCTGGTTCTGGATGAAC-------AG---------CGTGCA--CGGGGTGG-------------------------TGCC-GC-------------A-G--------GGGTT-CGGCGCCACCACCAGGGCCATGCAACGCGCCCTCGAGTGCG------GCGGGAACAACCCCGCCCAGATGAACGCGCGCGTCGGCTACTACAGGCAGTACTGCCGCCAGCTCGGCGTCGACCCGGGGCCCAACCTCACCTGCTAG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'Chitinases, Fig. 2') = N: 1-719; CODONPOSSET CodonPositions (CHARACTERS = 'Chitinases, Fig. 2') = N: 1-719; END; [ The following blocks are output data for analysis step 4475 ] BEGIN TREES; TITLE Tb9247; LINK TAXA = TaxaForAnalysisStep4475; TREE Fig._2 = [&R] ((Arabidopsis_thaliana_1,(Arabidodsis_thaliana_2,Arabidopsis_thaliana_3)),((((((Streptomyces_coelicolor_7,(Streptomyces_thermoviolaceus_8,Streptomyces_olivaceoviridis_9),(Streptomyces_griseus_10,Nocardiopsis_prasina_11)),Streptomyces_lavendulae_6),Burkholderia_gladioli_5),Phytophthora_infestans_4),(((Oryza_sativa_14,Oryza_sativa_15),((Zea_mays_17,Zea_mays_18),Saccharum_officinale_16)),Triticum_aestivum_13)),(((Brassica_napus_20,Arabidopsis_thaliana_21),((Arabidopsis_thaliana_24,((Phaseolus_vulgaris_25,Vigna_unguiculata_26),(Betula_pendula_27,Betula_pendula_28))),Beta_vulgaris_22,Beta_vulgaris_23)),Arabidopsis_thaliana_19),Picea_glauca_12)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3091] END;