#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 20, 2025; 9:14 GMT TreeBASE (cc) 1994-2008 Study reference: Marchant A., Rees B., & Zuccarello G. 2004. A tale of two species - possible origins of red to purple-coloured Gymnopilus species in Europe. Australasian Mycologist, 22(2): 57-72. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2159] [ The following blocks are input data for analysis step 4512 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4512; DIMENSIONS NTAX=26; TAXLABELS Gymnopilus_allochrous Gymnopilus_dilepis_BA5 Gymnopilus_dilepis_BRI_OLeary_5 Gymnopilus_dilepis_HL1283 Gymnopilus_dilepis_HL70329 Gymnopilus_dilepis_Leech_AR406 Gymnopilus_dilepis_Leech_AR982 Gymnopilus_dilepis_UNSW89.12 Gymnopilus_dilepis_UNSW89.311a Gymnopilus_dilepis_UNSW95.2 Gymnopilus_dilepis_UNSW99.3 Gymnopilus_junonius_AS25690 Gymnopilus_junonius_BRSA99.29 Gymnopilus_junonius_BRV99.1 Gymnopilus_junonius_IB70.320 Gymnopilus_junonius_UNSW98.24 Gymnopilus_luteofolius Gymnopilus_megasporus Gymnopilus_moabus Gymnopilus_picreus Gymnopilus_purpuratus_BRSA02.01 Gymnopilus_purpuratus_BRSA02.11 Gymnopilus_purpuratus_BRWA99.14 Gymnopilus_purpuratus_UNSW99.35 Gymnopilus_purpuratus_UNSW99.40 Gymnopilus_purpuratus_ZT02.01 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3832] TITLE Gymnopilus_ITS_rDNA; LINK TAXA = TaxaForAnalysisStep4512; DIMENSIONS NCHAR=594; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Gymnopilus_allochrous GGGAGTATGTGCTCATCGCGTCACCTTTATATTTCCACCTGTGCACTTTTTGTAGATTTGGATTGTAAC---TTTCCGAGGCAACTCGG--TTGGGAGGGAATGTCATTT---ATGGCTTTCCTTGTAACATGTTCAAATCTATGTTTTCATATACTCCAAAAATGTAACAGAATGTATCATT-GGGCCCTTGTGCCTATAAA-CTTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTTAATTCTCAGCCCTTATTAGCTTTT----GCT-TCTAATGGTCCTGGATGT-GGGGGTCCTTTGCTGGTTTCGCAAGAAATCTGCTCCCCTT-AAATGTATTAGCTGGTGCCCTTTGTGGACTTGTCTATTGGTGTGATAATTATCTACGCCATTGGATGTCTACTTTAAAACTGGGAT-GCATTGCTTCTAATCGTCCTTTC---AGGACATTTATTGACCATTT Gymnopilus_dilepis_BA5 GG?AGTATGTGCTC-GCTCGTCATCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TTTCTGAGGCAACTCAG--TTGGGAGG-AATGCTATTTC-GATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGCATCACT-GGGCC-TTGTGCCTATAAA-CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCGAAGTAATGGCT-TGGATGT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTTCTATTAAA-TGGGATTGCGCTGCTTCTAATCGTCCTCTT---AGGACAAT------------ Gymnopilus_dilepis_BRI_OLeary_5 GGGAGTATGTGCTC-GCTCGTCATCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TTTCTGAGGCAACTCAG--TTGGGAGG-AATGCTATTTC-GATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCACT-GGGCC-TTGTGCCTATAAA-CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCGAAGTAATGGCT-TGGATGT-GGGGGTCTTTTGCTGGTTTCG{AG}AAGAAATCTGCTCCCCTT-AAATG{CT}ATTAGCCGGTGCCCCGCGTGGAC{CT}-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTGCTATTAAA-TGGGATTGCGCTGCTTCTAATCGTCCTCTT---AGGACAATTATTGACCATTT Gymnopilus_dilepis_HL1283 GGGAGTATGTGCTC-GCTCGTCATCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TTTCTGAGGCAACTCAG--TTGGGAGG-AATGCTATTTT-GATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCACT-GGGCC-TTGTGCCTATAAA-CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCGAAGTAATGGCT-TGGATCT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACATCTGCTATTAAA-TGGGATTGCGCTGCTTCTAATCGTCCTCTT---AGGACAATTATTGACCATTT Gymnopilus_dilepis_HL70329 --------------------------------------------------------TTTGGAT-GTAAC---TTTCT?AGGCAACTCAG--TTGGGAGG-AATGCTATTTC-GATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCACT-GGGCC-TTGTGCCTATAAA-CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCGAAGTAATGGCT-TGGATGT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCCGCGTGG---------------------------------------------------------------------------------------------------------- Gymnopilus_dilepis_Leech_AR406 GGGAGTATGTGCTC-GCTCGTCATCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TTTCTGAGGCAACTCAG--TTGGGAGG-AATGCTATTTC-GATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCACT-GGGCC-TTGTGCCTATAAA-CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCGAAGTAATGGCT-TGGATGT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGCATTAGCCGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTGCTATTAAA-TGGGATTGCGCTGCTTCTAATCGTCCTCTT---AGGACAATTATTGACCATTT Gymnopilus_dilepis_Leech_AR982 GGGAGTATGTGCTC-GCTCGTCATCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TTTCTGAGGCAACTCAG--TTGGGAGG-AATGCTATTTC-GATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCACT-GGGCC-TTGTGCCTATAAA-CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCGAAGTAATGGCT-TGGATGT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTGCTATTAAA-TGGGATTGCGCTGCTTCTAATCGTCCTCTT---AGGACAATTATTGACCATTT Gymnopilus_dilepis_UNSW89.12 GGGAGTATGTGCTC-GCTCGTCATCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TTTCTGAGGCAACTCAG--TTGGGAGG-AATGCTATTTC-GATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCACT-GGGCC-TTGTGCCTATAAA-CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCGAAGTAATGGCT-TGGATGT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGCATTAGCCGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTGCTATTAAA-TGGGATTGCGCTGCTTCTAATCGTCCTC?T---AGGACAATTATTGACCATTT Gymnopilus_dilepis_UNSW89.311a GGGAGTATGTGCTC-GCTCGTCATCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TTTCTGAGGCAACTCAG--TTGGGAGG-A{AT}TGCTATTTC-GATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCACT-GGGCC-TTGTGCCTATAAA-CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCGAAGTAATGGCT-TGGATGT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGCATTAGCCGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTGCTATTAAA-TGGGATTGCGCTGCTTCTAATCGTCCTCTT---AGGACAATTATTGACCATTT Gymnopilus_dilepis_UNSW95.2 GGGAGTATGTGCTC-GCTCGTCATCTTTATCTTTCCACCTGTGCACTTTT{CT}GT{AC}GATTTGGAT-GTAAC---TTTCTGAGGCAACTCAG--TTGGGAGG-AATGCTATTTC-GATGGCTTTCCTTG{CT}---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAAC{AG}GAATGTATCACT-GGGCC-TTGTGCCTATAAA-CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCC{CT}TTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTTT---GCGAAGTAATGGCT-TGGATGT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTGCTATTAAA-TGGGATTGCGCTGCTTCTAATCGTCCTCCT---AGGACAATTATTGACCATTT Gymnopilus_dilepis_UNSW99.3 GGGAGTATGTGCTC-GCTCGTCATCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TTTCTGAGGCAACTCAG--TTGGGAGG-AATGCTATTTC-GATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCACT-GGGCC-TTGTGCCTATAAA-CCTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCGAAGTAATGGCT-TGGATGT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTGCTATTAAA-TGGGATTGCGCTGCTTCTAATCGTCCTC?T---AGGACAATTATTGACCATTT Gymnopilus_junonius_AS25690 GAGAGTATGTGCTC-GCCCGTCACCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGAATTGTAGC---TTTCCGAGGTAACTCGG--TTGGGAGG-AATGTCATT-C-G-TGGCTTTTCTTGTAATACGTTCAAGTCTATGTTTTCATATACTCCAAAAATGTAACAGAATGTATCATT-GGGCC-TTGTGCCTATAAA-CTTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTTAATTCTCAGCC-TTATTAGCTTTT----GCT-TCTAATGGTC-TGGATAT-GGGGGTCTTT-GCTGGTTTCGCAAGAAATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCTACGTGGACT-GTCTACTGGTGTGATAATTATCTACGCCGTTAGATGTCTGCT-TTAAA-TGGGAT-GCGCTGCTTCTAATCGTCCTTTC---AGGACAATTATTGACCATTT Gymnopilus_junonius_BRSA99.29 GAGAGTATGTGCTC-GCCC?TCACCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGAATTGTAGC---TTTCCGAGGTAACTCGG--TTGGGAGG-AATGTCATT-C-G-TGGCTTTTCTTGTAATACGTTCAAGTCTATGTTTTCATATACTCCAAAAATGTAACAGAATGTATCATT-GGGCC-TTGTGCCTATAAA-CTTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTTAATTCTCAGCC-TTATTAGCTTTT----GCT-TCTAATGGTC-TGGATGT-GGGGGTCTTT-GCTGGTTTCGCAAGAAATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCTACGTGGACT-GTCTACTGGTGTGATAATTATCTACGCCGTTAGATGTCTGCT-TTAAA-TGGGAT-GCGCTGCTTCTAATCGTCCTTTC---AGGACAATTATTGACCATTT Gymnopilus_junonius_BRV99.1 GAGAGTATGTGCTC-GCCCGTCACCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGAATTGTAGC---TTTCCGAGGTAACTCGG--TTGGGAGG-AATGTCATT-C-G-TGGCTTTTCTTGTAATACGTTCAAGTCTATGTTTTCATATACTCCAAAAATGTAACAGAATGTATCGTT-GGGCC-TTGTGCCTATAAA-CTTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTTAATTCTCAGCC-TTATTAGCTTTT----GCT-TCTAATGGTC-TGGATGT-GGGGGTCTTTTGCTGGTTTCGCAAGAAATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCTACGTGGACT-GTCTACTGGTGTGATAATTATCTACGCCGTTAGATGTCTGCT-TTAAA-TGGGAT-GCGCTGCTTCTAATCGTCCTTTC---AGGACAATTATTGACCATTT Gymnopilus_junonius_IB70.320 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTTAATTCTCAGCC-TTATTAGCTTTT----GCT-TCTAATGGTC-TGGATGT-GGGGGTCTTT-GCTGGTTTCGCAAGAAATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCTACGTGGACT-GTCTACTGGTGTGATAATTATCTACGCCGTTAGATGTCTGCT-TTAAA-TGGGAT-GCGCTGCTTCTAATCGTCCTTTC---AGGACAATTATTGACCATTT Gymnopilus_junonius_UNSW98.24 GAGAGTATGTGCTC-GCCCGTCACCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGAATTGTAGC---TTTCCGAGGTAACTCGG--TTGGGAGG-AATGTCATT-C-G-TGGCTTTTCTTGTAATACGTTCAAGTCTATGTTTTCATATACTCCAAAAATGTAACAGAATGTATCATT-GGGCC-TTGTGCCTATAAA-CTTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTTAATTCTCAGCC-TTATTAGCTTTT----GCT-TCTAATGGTC-TGGATGT-GGGGGTCTTT-GCTGGTTTCGCAAGAAATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCTACGTGGACT-GTCTACTGGTGTGATAATTATCTACGCCGTTAGATGTCTGCT-TTAAA-TGGGAT-GCGCTGCTTCTAATCGTCCTTTC---AGGACAATTATTGACCATTT Gymnopilus_luteofolius -------------------GTCATCTTTATCTTTCCACCTGTGCACTTTTTGTA?ATTTGGAT-GTAAC---TGTCCGAGGCAACTCGG--TTGGGAGG-AATGCTATCTTTGATGGCTTTCCTTGT---ATGTCCAAGTCTATGTCTTCATATACTCCAAGTATGTAACAGAATGTATCACT-GGGCC-TTGTGCCTATAAA-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATCAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCGAAGTAATGGCT-TGGACTT-GGGGGTCTTTTGCTGGTTTCGAAAGAGATCTGCTCCCCTT-AAATGTATTAGCCGGTGCCCCGCGTGGACT-GTCTATTGGTGTGATAATTAT?TACGCCGTTAGATGTCTGCTATTAAA-TGGGAT-G?GCTGCTT?TAATCGTCCTC-----AGGACAATTATTG------- Gymnopilus_megasporus GGGAGTATGTGCTC-GCTTGTCATCTTTATCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TGTCCGAGGTAACTCGG--TTGGGAGG-AATGCTGTCTCTGATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCAATCGGGCC-TTGTGCCTATAAA-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCGAAGTAATGGCT-TGGACTT-GGGGGTCTTTTGCTGGTTTCGAAAGAGATCTGCTCCCCTT-AAATGCATTAGCCGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGATGTCTGCTATTAAA-TGGGAT-GCGCTGCTTCTAATCGTCCTCT----AGGACAATTATTGACCATTT Gymnopilus_moabus GGGAGTATGTGCTC-GCCCGTCACCTTTATCTTTCCACCTGTGCACTTATTGTAGATTTGGAT-ATAAC---TGTCCGAGGCAACTCGG--TTGGGAGG-AATGTCATT-C-G-TGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAAAATGTAACAGAATGTATCCTA--GGCC-TTGTGCCTATAAA-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCTATGTAATGGCT-TGGATGT-GGGGGTCTTTTGCTGGTTTCGAAAGAGATCTGCTCCCCTT-AAATGCATTAGCCGGTGCCCCGCGTGGACG-GTCTATTGGTGTGATAATTATCTACGCCGTTAGATGTCTGCT-TTAAA-TGGGAT-GTGCTGCTTCTAATCGTCCTCTT---GGGACAATTATTGACCATTT Gymnopilus_picreus GAAGATATGTGCTC-GCCTGTCACCTTTATCTTTCCACCTGTGCACCTTTTGTAGACTTAGAT-GTAACCTTTTTCCGAGGCAACTCGGGGTTGGGAGG-AATGCTTTTAT--AAGGCTTTCCTTGT---GCATCCTAGTCTATGTTTT-ATATACTCCAAACATGTAACAGAATGTATCATT-GGGCT-TTGTGCCTATAAAACTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACCTTTATTAGCTTTCGCAAGCTTGGTAAAGGAT-TGGATGT-GAGGG-CTTATGCTGGCTTCGAAAGATGTCTGCTCCC-TTCAAATATATTAGCTGGTGCCC-GTGCGGAACCGTCTATTGGTGTGATAATTATCTACGCTATTAGACATCTGC-ATTAAA-TGGGTT-ATACTGCTTCTAACTGTCTATTTAATTAGACAATACATGACTATTT Gymnopilus_purpuratus_BRSA02.01 GGGAGTATGTGCTC-GCTCGTCAT?TTT?TCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TGTCCGAGGCAACTCGG--TT?GGAGG-AATGCTATCTCTGATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCAT?-GGGCC-TTGTGCCTATAAA-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCAAAGTAATGGCT-TGGACTTTGGGGGTCTTTTGCTGGTTTCGAAAGAAAT{CT}TGCTCCCCTT-AAATGTATTAGC?GGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGA{CT}GTCTGCTATTAAA-TGGGAT-GTGCTGCTTCTAATCGTCCTT-----TGGACAATTATTGACCATTT Gymnopilus_purpuratus_BRSA02.11 GGGAGTACGTGCTC-GCTCGTCAT{CT}TTTGTCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TGTCCGAGGCAACTCGG--TTGGGAGG-AATGCTATCTCTGATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCAT{CT}-GGGCC-TTG{CT}GCCTATAAA-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCAAAGTAATGGCT-TGGACTT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGTATTAGC{CT}GGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTGCTATTAAA-TGGGAT-GTGCTGCTTCTAATCGTC{AC}TT-----TGGACAATTATTGACCATTT Gymnopilus_purpuratus_BRWA99.14 GGGAGTATGTGCTC-GCTCGTCATCTTTGTCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TGTCCGAGGCAACTCGG--TTGGGAGG-AATGCTATCTCTGATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCATT-GGGCC-TTGTGCCTATAAA-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCAAAGTAATGGCT-TGGACTT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGTATTAGCTGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTGCTATTAAA-TGGGAT-GTGCTGCTTCTAATCGTCCTT-----TGGACAATTATTGACCATTT Gymnopilus_purpuratus_UNSW99.35 GGGAGTATGTGCTC-GCTCGTCATCTTTGTCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TGTCCGAGGCAACTCGG--TTGGGAGG-AATGCTATCTCTGATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCATT-GGGCC-TTGTGCCTATAAA-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCAAAGTAATGGCT-TGGACTT-GGGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Gymnopilus_purpuratus_UNSW99.40 GGGAGTATGTGCTC-GCTCGTCATCTTTGCCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TGTCCGAGGCAACTCGG--TTGGGAGG-AATGCTATCTCTGATGGCTTTCCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTATCATT-GGGCC-TTGTGCCTATAAA-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCAAAGTAATGGCT-TGGACTT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGTATTAGCTGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTGCTATTAAA-TGGGAT-GTGCTGCTTCTAATCGTCCTT-----TGGACAATTATTGACCATTT Gymnopilus_purpuratus_ZT02.01 GGGAGTATGTGCTC-GCTCGTCATCTTTGTCTTTCCACCTGTGCACTTTTTGTAGATTTGGAT-GTAAC---TGTCCGAGGCAACTCGG--TTGGGAGG-AATGCTATCTCTGATGGCTTTTCTTGT---ATGTCCAAGTCTATGTTTTCATATACTCCAAGTATGTAACAGAATGTGTCATT-GGGCC-TTGTGCCTATAAA-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-TTACTAGCTTTT----GCAAAGTAATGGCT-TGGACTT-GGGGGTCTTTTGCTGGTTTCGAAAGAAATCTGCTCCCCTT-AAATGTATTAGCTGGTGCCCCGCGTGGACC-GTCTATTGGTGTGATAATTATCTACGCCGTTAGACGTCTGCTATTAAA-TGGGAT-GTGCTGCTTCTAATCGTCCTT-----TGGACAATTATTGACCATTT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Gymnopilus_ITS_rDNA) = N: 1-594; CODONPOSSET CodonPositions (CHARACTERS = Gymnopilus_ITS_rDNA) = N: 1-594; END; [ The following blocks are output data for analysis step 4512 ] BEGIN TREES; TITLE Tb9284; LINK TAXA = TaxaForAnalysisStep4512; TREE Fig._4 = [&R] (((((Gymnopilus_purpuratus_ZT02.01,Gymnopilus_purpuratus_BRWA99.14,Gymnopilus_purpuratus_UNSW99.40,Gymnopilus_purpuratus_BRSA02.11,Gymnopilus_purpuratus_UNSW99.35,Gymnopilus_purpuratus_BRSA02.01),(Gymnopilus_megasporus,Gymnopilus_luteofolius)),(Gymnopilus_dilepis_BA5,Gymnopilus_dilepis_UNSW99.3,Gymnopilus_dilepis_UNSW95.2,Gymnopilus_dilepis_Leech_AR406,Gymnopilus_dilepis_UNSW89.311a,Gymnopilus_dilepis_UNSW89.12,Gymnopilus_dilepis_BRI_OLeary_5,Gymnopilus_dilepis_Leech_AR982,Gymnopilus_dilepis_HL70329,Gymnopilus_dilepis_HL1283)),(((Gymnopilus_junonius_BRV99.1,Gymnopilus_junonius_BRSA99.29,Gymnopilus_junonius_UNSW98.24,Gymnopilus_junonius_AS25690,Gymnopilus_junonius_IB70.320),Gymnopilus_allochrous),Gymnopilus_moabus)),Gymnopilus_picreus); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5314] END;